Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
21:21:48 (337303): wrapper (7.7.26015): starting
21:21:48 (337303): wrapper: running run_atlas (--nthreads 4)
[2025-04-12 21:21:48] Arguments: --nthreads 4
[2025-04-12 21:21:48] Threads: 4
[2025-04-12 21:21:48] Checking for CVMFS
[2025-04-12 21:21:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 21:21:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 21:21:48] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 21:21:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 21:21:48] 2.12.7.0 302542 6 43808 144786 1 12 3989194 4096001 1714 130560 0 87534 99.990 2423 328 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-12 21:21:48] CVMFS is ok
[2025-04-12 21:21:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-12 21:21:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-12 21:21:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-12 21:21:48] Further information can be found at the LHC@home message board.
[2025-04-12 21:21:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 21:21:48] Checking for apptainer binary...
[2025-04-12 21:21:48] apptainer is not installed, using version from CVMFS
[2025-04-12 21:21:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 21:21:48] minis
[2025-04-12 21:21:48] apptainer works
[2025-04-12 21:21:48] Set ATHENA_PROC_NUMBER=4
[2025-04-12 21:21:48] Set ATHENA_CORE_NUMBER=4
[2025-04-12 21:21:48] Starting ATLAS job with PandaID=6600461776
[2025-04-12 21:21:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-12 22:29:41]  *** The last 200 lines of the pilot log: ***
[2025-04-12 22:29:41]  is_altstaged=None
[2025-04-12 22:29:41]  is_tar=False
[2025-04-12 22:29:41]  lfn=log.44075164._046619.job.log.tgz.1
[2025-04-12 22:29:41]  mtime=0
[2025-04-12 22:29:41]  protocol_id=None
[2025-04-12 22:29:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-12 22:29:41]  replicas=None
[2025-04-12 22:29:41]  scope=mc23_13p6TeV
[2025-04-12 22:29:41]  status=None
[2025-04-12 22:29:41]  status_code=0
[2025-04-12 22:29:41]  storage_token=
[2025-04-12 22:29:41]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6600461776/log.44075164._046619.job.log.tgz.1
[2025-04-12 22:29:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/4f/log.44075164._046619.job.log.tgz.1
[2025-04-12 22:29:41]  workdir=None
[2025-04-12 22:29:41] ]
[2025-04-12 22:29:41] 2025-04-12 21:29:20,235 | INFO     | transferring file log.44075164._046619.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6600461776/log.44075164._046619.job.log.tgz.1 to /var/lib/boinc
[2025-04-12 22:29:41] 2025-04-12 21:29:20,235 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6600461776/log.44075164._046619.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.440751
[2025-04-12 22:29:41] 2025-04-12 21:29:20,242 | INFO     | adding to output.list: log.44075164._046619.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/4f/log.44075164._046619.job.log.tg
[2025-04-12 22:29:41] 2025-04-12 21:29:20,242 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-12 22:29:41] 2025-04-12 21:29:20,242 | INFO     | summary of transferred files:
[2025-04-12 22:29:41] 2025-04-12 21:29:20,242 | INFO     |  -- lfn=log.44075164._046619.job.log.tgz.1, status_code=0, status=transferred
[2025-04-12 22:29:41] 2025-04-12 21:29:20,242 | INFO     | stage-out finished correctly
[2025-04-12 22:29:41] 2025-04-12 21:29:20,267 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | job 6600461776 has state=finished
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | preparing for final server update for job 6600461776 in state='finished'
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | this job has now completed (state=finished)
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | log transfer has been attempted: DONE
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | job 6600461776 has finished - writing final server update
[2025-04-12 22:29:41] 2025-04-12 21:29:21,221 | INFO     | total number of processed events: 400 (read)
[2025-04-12 22:29:41] 2025-04-12 21:29:21,222 | INFO     | executing command: lscpu
[2025-04-12 22:29:41] 2025-04-12 21:29:21,232 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-12 22:29:41] 2025-04-12 21:29:21,338 | INFO     | PID=341071 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-12 22:29:41] 2025-04-12 21:29:21,338 | INFO     | .. there are 4 such processes running
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6600461776/memory_monitor_summary.json (trf name=prmon)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | INFO     | extracted standard info from prmon json
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | INFO     | extracted standard memory fields from prmon json
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-12 22:29:41] 2025-04-12 21:29:22,315 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | fitting pss+swap vs Time
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | sum of square deviations: 66959395.0
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | sum of deviations: 12325116276.5
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | mean x: 1744491433.5
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | mean y: 2282349.9166666665
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | -- intersect: -321103661950.29193
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | intersect: -321103661950.29193
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | chi2: 1.8905765175190752
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | -- intersect: -321103661950.29193
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | current memory leak: 184.07 B/s (using 60 data points, chi2=1.89)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,316 | INFO     | ..............................
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . Timing measurements:
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . get job = 0 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . initial setup = 3 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . payload setup = 1 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . stage-in = 0 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . payload execution = 4029 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . stage-out = 0 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | . log creation = 0 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,317 | INFO     | ..............................
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | 
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | job summary report
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | --------------------------------------------------
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | PanDA job id: 6600461776
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | task id: 44075164
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | errors: (none)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | pilot state: finished 
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | transexitcode: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | exeerrorcode: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | exeerrordiag: 
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | exitcode: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | exitmsg: OK
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | cpuconsumptiontime: 13063 s
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | nevents: 400
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | neventsw: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | pid: 347726
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | pgrp: 347726
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | corecount: 4
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | event service: False
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | sizes: {0: 2417283, 1: 2417489, 11: 2417517, 4034: 2443403, 4035: 2452413, 4037: 2452527}
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | --------------------------------------------------
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | 
[2025-04-12 22:29:41] 2025-04-12 21:29:22,344 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | job 6600461776 has completed (purged errors)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,352 | INFO     | overall cleanup function is called
[2025-04-12 22:29:41] 2025-04-12 21:29:22,835 | WARNING  | process 347726 can no longer be monitored (due to stat problems) - aborting
[2025-04-12 22:29:41] 2025-04-12 21:29:22,857 | INFO     | using path: /var/lib/boinc-client/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-04-12 22:29:41] 2025-04-12 21:29:22,887 | INFO     | number of running child processes to parent process 347726: 1
[2025-04-12 22:29:41] 2025-04-12 21:29:22,887 | INFO     | maximum number of monitored processes: 6
[2025-04-12 22:29:41] 2025-04-12 21:29:22,887 | INFO     | aborting job monitoring since job object (job id=6600461776) has expired
[2025-04-12 22:29:41] 2025-04-12 21:29:23,357 | INFO     | --- collectZombieJob: --- 10, [347726]
[2025-04-12 22:29:41] 2025-04-12 21:29:23,357 | INFO     | zombie collector waiting for pid 347726
[2025-04-12 22:29:41] 2025-04-12 21:29:23,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-12 22:29:41] 2025-04-12 21:29:23,357 | INFO     | collected zombie processes
[2025-04-12 22:29:41] 2025-04-12 21:29:23,357 | INFO     | will attempt to kill all subprocesses of pid=347726
[2025-04-12 22:29:41] 2025-04-12 21:29:23,388 | INFO     | process IDs to be killed: [347726] (in reverse order)
[2025-04-12 22:29:41] 2025-04-12 21:29:23,405 | WARNING  | found no corresponding commands to process id(s)
[2025-04-12 22:29:41] 2025-04-12 21:29:23,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-12 22:29:41] 2025-04-12 21:29:23,406 | INFO     | did not find any defunct processes belonging to 347726
[2025-04-12 22:29:41] 2025-04-12 21:29:23,407 | INFO     | did not find any defunct processes belonging to 347726
[2025-04-12 22:29:41] 2025-04-12 21:29:23,407 | INFO     | ready for new job
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | **************************************
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | **************************************
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | 
[2025-04-12 22:29:41] 2025-04-12 21:29:23,408 | INFO     | architecture information:
[2025-04-12 22:29:41] 2025-04-12 21:29:23,409 | INFO     | executing command: cat /etc/os-release
[2025-04-12 22:29:41] 2025-04-12 21:29:23,413 | INFO     | cat /etc/os-release:
[2025-04-12 22:29:41] NAME="CentOS Linux"
[2025-04-12 22:29:41] VERSION="7 (Core)"
[2025-04-12 22:29:41] ID="centos"
[2025-04-12 22:29:41] ID_LIKE="rhel fedora"
[2025-04-12 22:29:41] VERSION_ID="7"
[2025-04-12 22:29:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-12 22:29:41] ANSI_COLOR="0;31"
[2025-04-12 22:29:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-12 22:29:41] HOME_URL="https://www.centos.org/"
[2025-04-12 22:29:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-12 22:29:41] 
[2025-04-12 22:29:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-12 22:29:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-12 22:29:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-12 22:29:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-12 22:29:41] 
[2025-04-12 22:29:41] 2025-04-12 21:29:23,413 | INFO     | **************************************
[2025-04-12 22:29:41] 2025-04-12 21:29:23,916 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | INFO     | sufficient remaining disk space (61759029248 B)
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | INFO     | current server update state: UPDATING_FINAL
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | INFO     | update_server=False
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | INFO     | aborting loop
[2025-04-12 22:29:41] 2025-04-12 21:29:23,922 | INFO     | found 0 job(s) in 20 queues
[2025-04-12 22:29:41] 2025-04-12 21:29:23,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-12 22:29:41] 2025-04-12 21:29:23,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-12 22:29:41] 2025-04-12 21:29:24,235 | INFO     | all payload control threads have been joined
[2025-04-12 22:29:41] 2025-04-12 21:29:24,318 | INFO     | all job control threads have been joined
[2025-04-12 22:29:41] 2025-04-12 21:29:24,319 | INFO     | all data control threads have been joined
[2025-04-12 22:29:41] 2025-04-12 21:29:24,927 | INFO     | [job] retrieve thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:24,928 | INFO     | [job] queue monitor thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:24,928 | INFO     | [job] job monitor thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,149 | INFO     | [payload] failed_post thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,155 | INFO     | [payload] execute_payloads thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,240 | INFO     | [payload] control thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,323 | INFO     | [job] control thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,324 | INFO     | [data] control thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,440 | INFO     | [data] copytool_in thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,633 | INFO     | [job] create_data_payload thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,654 | INFO     | [job] validate thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,822 | INFO     | [payload] validate_post thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,873 | INFO     | [payload] validate_pre thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:25,927 | INFO     | [data] copytool_out thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:26,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-12 22:29:41] 2025-04-12 21:29:30,301 | INFO     | [data] queue_monitor thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:34,505 | INFO     | job.realtimelogging is not enabled
[2025-04-12 22:29:41] 2025-04-12 21:29:35,510 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-12 22:29:41] 2025-04-12 21:29:36,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128477015394112)>', '<ExcThread(monitor, started 128476665329408)>']
[2025-04-12 22:29:41] 2025-04-12 21:29:36,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-12 22:29:41] 2025-04-12 21:29:36,986 | INFO     | [monitor] control thread has ended
[2025-04-12 22:29:41] 2025-04-12 21:29:41,017 | INFO     | all workflow threads have been joined
[2025-04-12 22:29:41] 2025-04-12 21:29:41,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-12 22:29:41] 2025-04-12 21:29:41,017 | INFO     | traces error code: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:41,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-12 22:29:41] 2025-04-12 21:29:41,051 [wrapper] ==== pilot stdout END ====
[2025-04-12 22:29:41] 2025-04-12 21:29:41,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-12 22:29:41] 2025-04-12 21:29:41,053 [wrapper] pilotpid: 341071
[2025-04-12 22:29:41] 2025-04-12 21:29:41,053 [wrapper] Pilot exit status: 0
[2025-04-12 22:29:41] 2025-04-12 21:29:41,057 [wrapper] pandaids: 6600461776
[2025-04-12 22:29:41] 2025-04-12 21:29:41,066 [wrapper] cleanup supervisor_pilot  387606 341072
[2025-04-12 22:29:41] 2025-04-12 21:29:41,066 [wrapper] Test setup, not cleaning
[2025-04-12 22:29:41] 2025-04-12 21:29:41,067 [wrapper] apfmon messages muted
[2025-04-12 22:29:41] 2025-04-12 21:29:41,068 [wrapper] ==== wrapper stdout END ====
[2025-04-12 22:29:41] 2025-04-12 21:29:41,069 [wrapper] ==== wrapper stderr END ====
[2025-04-12 22:29:41]  *** Error codes and diagnostics ***
[2025-04-12 22:29:41]     "exeErrorCode": 0,
[2025-04-12 22:29:41]     "exeErrorDiag": "",
[2025-04-12 22:29:41]     "pilotErrorCode": 0,
[2025-04-12 22:29:41]     "pilotErrorDiag": "",
[2025-04-12 22:29:41]  *** Listing of results directory ***
[2025-04-12 22:29:41] total 409116
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc    495897 Apr 12 17:10 pilot3.tar.gz
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc      5111 Apr 12 17:37 queuedata.json
[2025-04-12 22:29:41] -rwx------ 1 boinc boinc     37140 Apr 12 17:37 runpilot2-wrapper.sh
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc       100 Apr 12 21:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-12 22:29:41] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 21:21 run_atlas
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc       105 Apr 12 21:21 job.xml
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc     17569 Apr 12 21:21 start_atlas.sh
[2025-04-12 22:29:41] drwxrwx--x 1 boinc boinc        76 Apr 12 21:21 shared
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc    508881 Apr 12 21:21 input.tar.gz
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc      6792 Apr 12 21:21 init_data.xml
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc 222920281 Apr 12 21:21 EVNT.44075162._001813.pool.root.1
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc         0 Apr 12 21:21 boinc_lockfile
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc      2549 Apr 12 21:21 pandaJob.out
[2025-04-12 22:29:41] -rw------- 1 boinc boinc       424 Apr 12 21:21 setup.sh.local
[2025-04-12 22:29:41] -rw------- 1 boinc boinc    985800 Apr 12 21:21 agis_schedconf.cvmfs.json
[2025-04-12 22:29:41] -rw------- 1 boinc boinc   1603529 Apr 12 21:21 agis_ddmendpoints.agis.ALL.json
[2025-04-12 22:29:41] drwx------ 1 boinc boinc       368 Apr 12 21:21 pilot3
[2025-04-12 22:29:41] -rw------- 1 boinc boinc 190898899 Apr 12 22:29 HITS.44075164._046619.pool.root.1
[2025-04-12 22:29:41] -rw------- 1 boinc boinc        95 Apr 12 22:29 pilot_heartbeat.json
[2025-04-12 22:29:41] -rw------- 1 boinc boinc      1027 Apr 12 22:29 memory_monitor_summary.json
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc       529 Apr 12 22:29 boinc_task_state.xml
[2025-04-12 22:29:41] -rw------- 1 boinc boinc    224283 Apr 12 22:29 log.44075164._046619.job.log.tgz.1
[2025-04-12 22:29:41] -rw------- 1 boinc boinc      7664 Apr 12 22:29 heartbeat.json
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc        27 Apr 12 22:29 wrapper_checkpoint.txt
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc      8192 Apr 12 22:29 boinc_mmap_file
[2025-04-12 22:29:41] -rw------- 1 boinc boinc      4555 Apr 12 22:29 pilotlog.txt
[2025-04-12 22:29:41] -rw------- 1 boinc boinc    419974 Apr 12 22:29 log.44075164._046619.job.log.1
[2025-04-12 22:29:41] -rw------- 1 boinc boinc       357 Apr 12 22:29 output.list
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc       620 Apr 12 22:29 runtime_log
[2025-04-12 22:29:41] -rw------- 1 boinc boinc    665600 Apr 12 22:29 result.tar.gz
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc     11107 Apr 12 22:29 runtime_log.err
[2025-04-12 22:29:41] -rw------- 1 boinc boinc       644 Apr 12 22:29 5dbNDm21sN7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmeayKDmUDHKKn.diag
[2025-04-12 22:29:41] -rw-r--r-- 1 boinc boinc     21532 Apr 12 22:29 stderr.txt
[2025-04-12 22:29:41] HITS file was successfully produced:
[2025-04-12 22:29:41] -rw------- 1 boinc boinc 190898899 Apr 12 22:29 shared/HITS.pool.root.1
[2025-04-12 22:29:41]  *** Contents of shared directory: ***
[2025-04-12 22:29:41] total 405296
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc     17569 Apr 12 21:21 start_atlas.sh
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc    508881 Apr 12 21:21 input.tar.gz
[2025-04-12 22:29:41] -rw-r--r-- 2 boinc boinc 222920281 Apr 12 21:21 ATLAS.root_0
[2025-04-12 22:29:41] -rw------- 1 boinc boinc 190898899 Apr 12 22:29 HITS.pool.root.1
[2025-04-12 22:29:41] -rw------- 1 boinc boinc    665600 Apr 12 22:29 result.tar.gz
22:29:43 (337303): run_atlas exited; CPU time 13091.701409
22:29:43 (337303): called boinc_finish(0)

</stderr_txt>
]]>

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