Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 09:21:02 (65522): Detected: vboxwrapper 26206
2025-04-13 09:21:02 (65522): Detected: BOINC client v8.0.2
2025-04-13 09:21:02 (65522): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-13 09:21:02 (65522): Detected: Sandbox Configuration Enabled
2025-04-13 09:21:02 (65522): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 09:21:03 (65522): Create VM. (boinc_274131d014901ff3, slot#2)
2025-04-13 09:21:03 (65522): Setting Memory Size for VM. (4800MB)
2025-04-13 09:21:03 (65522): Setting CPU Count for VM. (8)
2025-04-13 09:21:03 (65522): Setting Chipset Options for VM.
2025-04-13 09:21:03 (65522): Setting Graphics Controller Options for VM.
2025-04-13 09:21:03 (65522): Setting Boot Options for VM.
2025-04-13 09:21:03 (65522): Setting Network Configuration for NAT.
2025-04-13 09:21:03 (65522): Enabling VM Network Access.
2025-04-13 09:21:03 (65522): Disabling USB Support for VM.
2025-04-13 09:21:03 (65522): Disabling COM Port Support for VM.
2025-04-13 09:21:03 (65522): Disabling Audio Support for VM.
2025-04-13 09:21:03 (65522): Disabling Clipboard Support for VM.
2025-04-13 09:21:03 (65522): Disabling Drag and Drop Support for VM.
2025-04-13 09:21:03 (65522): Adding storage controller(s) to VM.
2025-04-13 09:21:04 (65522): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 09:21:04 (65522): Adding VirtualBox Guest Additions to VM.
2025-04-13 09:21:04 (65522): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 09:21:04 (65522): forwarding host port 62440 to guest port 80
2025-04-13 09:21:04 (65522): Enabling remote desktop for VM.
2025-04-13 09:21:04 (65522): Required extension pack not installed, remote desktop not enabled.
2025-04-13 09:21:04 (65522): Enabling shared directory for VM.
2025-04-13 09:21:04 (65522): Starting VM using VBoxManage interface. (boinc_274131d014901ff3, slot#2)
2025-04-13 09:21:10 (65522): Successfully started VM. (PID = '65582')
2025-04-13 09:21:10 (65522): Reporting VM Process ID to BOINC.
2025-04-13 09:21:10 (65522): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-13 09:21:10 (65522): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 09:21:10 (65522): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 09:21:10 (65522): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 09:21:10 (65522): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 09:21:10 (65522): Detected: Web Application Enabled (http://localhost:62440)
2025-04-13 09:21:10 (65522): Preference change detected
2025-04-13 09:21:10 (65522): Setting CPU throttle for VM. (100%)
2025-04-13 09:21:10 (65522): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 09:21:13 (65522): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 09:21:13 (65522): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 09:21:15 (65522): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 09:21:15 (65522): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 09:21:15 (65522): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 09:21:25 (65522): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 09:21:25 (65522): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 09:21:43 (65522): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.000527 main     Log opened 2025-04-13T13:21:42.123691000Z
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.000766 main     OS Product: Linux
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.000975 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.001082 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.001203 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.001205 main     Process ID: 1375
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.001206 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 09:21:43 (65522): Guest Log: 00:00:00.009195 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 09:21:43 (65522): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 09:21:43 (65522): Guest Log: [INFO] Mounting shared directory
2025-04-13 09:21:44 (65522): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 09:21:50 (65522): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 09:21:50 (65522): Guest Log: [INFO] Detected branch: prod
2025-04-13 09:21:51 (65522): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 09:21:51 (65522): Guest Log: Copying input files
2025-04-13 09:21:57 (65522): Guest Log: Copied input files into RunAtlas.
2025-04-13 09:21:57 (65522): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 09:21:57 (65522): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 09:21:57 (65522): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 09:21:57 (65522): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 09:22:08 (65522): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 09:22:08 (65522): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 09:22:08 (65522): Guest Log: 2.6.3.0 1652 0 30156 144812 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 09:22:10 (65522): Guest Log: copied the webapp to /var/www
2025-04-13 09:22:10 (65522): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-13 09:22:10 (65522): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-13 09:22:11 (65522): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 09:22:11 (65522): Guest Log:  *** Starting ATLAS job. (PandaID=6600443099 taskID=44075164) ***
2025-04-13 11:01:10 (65522): Status Report: Elapsed Time: '6000.000000'
2025-04-13 11:01:10 (65522): Status Report: CPU Time: '39553.130000'
2025-04-13 12:41:10 (65522): Status Report: Elapsed Time: '12000.000000'
2025-04-13 12:41:10 (65522): Status Report: CPU Time: '89806.250000'
2025-04-13 14:21:10 (65522): Status Report: Elapsed Time: '18000.000000'
2025-04-13 14:21:10 (65522): Status Report: CPU Time: '139860.660000'
2025-04-13 16:01:10 (65522): Status Report: Elapsed Time: '24000.000000'
2025-04-13 16:01:10 (65522): Status Report: CPU Time: '189647.190000'
2025-04-13 16:39:57 (65522): Guest Log:  *** Job finished ***
2025-04-13 16:39:57 (65522): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:46,177 | INFO     | [job] queue monitor thread has finished
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:48,402 | INFO     | [data] queue_monitor thread has finished
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:49,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403252823872)>', '<ExcThread(monitor, started 140402640267008)>']
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:50,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:50,183 | INFO     | [monitor] control thread has ended
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:51,464 [wrapper] supervise_pilot (15 min periods counter: 30)
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,629 | INFO     | all workflow threads have been joined
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,630 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,631 | INFO     | traces error code: 0
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,909 [wrapper] ==== pilot stdout END ====
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,940 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,962 [wrapper] pilotpid: 6031
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:54,991 [wrapper] Pilot exit status: 0
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,165 [wrapper] pandaids: 6600443099
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,357 [wrapper] cleanup supervisor_pilot 32246 6032
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,387 [wrapper] Test setup, not cleaning
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,419 [wrapper] apfmon messages muted
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,449 [wrapper] ==== wrapper stdout END ====
2025-04-13 16:39:57 (65522): Guest Log: 2025-04-13 20:39:55,479 [wrapper] ==== wrapper stderr END ====
2025-04-13 16:39:57 (65522): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 16:39:57 (65522): Guest Log:     "exeErrorCode": 0,
2025-04-13 16:39:57 (65522): Guest Log:     "exeErrorDiag": "",
2025-04-13 16:39:57 (65522): Guest Log:     "pilotErrorCode": 0,
2025-04-13 16:39:57 (65522): Guest Log:     "pilotErrorDiag": "",
2025-04-13 16:39:57 (65522): Guest Log:  *** Listing of results directory ***
2025-04-13 16:39:57 (65522): Guest Log: total 198380
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 14:19 pilot3.tar.gz
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 14:20 queuedata.json
2025-04-13 16:39:57 (65522): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 14:22 runpilot2-wrapper.sh
2025-04-13 16:39:57 (65522): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 13 13:21 start_atlas.sh
2025-04-13 16:39:57 (65522): Guest Log: -rw-r-----. 1 atlas atlas    508883 Apr 13 13:21 input.tar.gz
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas      8530 Apr 13 13:21 init_data.xml
2025-04-13 16:39:57 (65522): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 13:21 EVNT.44075162._001765.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Apr 13 13:22 pandaJob.out
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas       424 Apr 13 13:22 setup.sh.local
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas    985772 Apr 13 13:23 agis_schedconf.cvmfs.json
2025-04-13 16:39:57 (65522): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 13:23 pilot3
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas 194778691 Apr 13 20:37 HITS.44075164._045423.pool.root.1
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas      1040 Apr 13 20:38 memory_monitor_summary.json
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 20:39 agis_ddmendpoints.agis.ALL.json
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas    478141 Apr 13 20:39 log.44075164._045423.job.log.tgz.1
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 20:39 pilot_heartbeat.json
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas      7716 Apr 13 20:39 heartbeat.json
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas      4852 Apr 13 20:39 pilotlog.txt
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas   1813007 Apr 13 20:39 log.44075164._045423.job.log.1
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 20:39 output.list
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 20:39 runtime_log
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas   2314240 Apr 13 20:39 result.tar.gz
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas       674 Apr 13 20:39 ScDODm6vqN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmleRLDmbFA1Eo.diag
2025-04-13 16:39:57 (65522): Guest Log: -rw-r--r--. 1 atlas atlas     10971 Apr 13 20:39 runtime_log.err
2025-04-13 16:39:57 (65522): Guest Log: Looking for outputfile HITS.44075164._045423.pool.root.1
2025-04-13 16:39:57 (65522): Guest Log: HITS file was successfully produced
2025-04-13 16:39:57 (65522): Guest Log: -rw-------. 1 atlas atlas 194778691 Apr 13 20:37 /home/atlas/RunAtlas/HITS.44075164._045423.pool.root.1
2025-04-13 16:39:57 (65522): Guest Log: Successfully finished the ATLAS job!
2025-04-13 16:39:57 (65522): Guest Log: Copying the results back to the shared directory!
2025-04-13 16:39:58 (65522): Guest Log:  *** Contents of shared directory: ***
2025-04-13 16:39:58 (65522): Guest Log: total 216104
2025-04-13 16:39:58 (65522): Guest Log: -rw-rw----. 1 root root 218428554 Apr 13 13:21 ATLAS.root_0
2025-04-13 16:39:58 (65522): Guest Log: -rw-rw-r--. 1 root root      8530 Apr 13 13:21 init_data.xml
2025-04-13 16:39:58 (65522): Guest Log: -rw-rw----. 1 root root    508883 Apr 13 13:21 input.tar.gz
2025-04-13 16:39:58 (65522): Guest Log: -rw-r--r--. 1 root root   2314240 Apr 13 20:39 result.tar.gz
2025-04-13 16:39:58 (65522): Guest Log: -rw-rw----. 1 root root     17569 Apr 13 13:21 start_atlas.sh
2025-04-13 16:39:58 (65522): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 16:39:58 (65522): VM Completion File Detected.
2025-04-13 16:39:58 (65522): Powering off VM.
2025-04-13 16:39:58 (65522): Successfully stopped VM.
2025-04-13 16:39:58 (65522): Deregistering VM. (boinc_274131d014901ff3, slot#2)
2025-04-13 16:39:58 (65522): Removing network bandwidth throttle group from VM.
2025-04-13 16:39:58 (65522): Removing VM from VirtualBox.
16:40:04 (65522): called boinc_finish(0)

</stderr_txt>
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