Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-13 08:07:52 (10216): Detected: vboxwrapper 26206
2025-04-13 08:07:52 (10216): Detected: BOINC client v8.0.2
2025-04-13 08:07:53 (10216): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-13 08:07:53 (10216): Successfully copied 'init_data.xml' to the shared directory.
2025-04-13 08:07:54 (10216): Create VM. (boinc_c4332945c3a4b5ee, slot#1)
2025-04-13 08:07:54 (10216): Setting Memory Size for VM. (4800MB)
2025-04-13 08:07:54 (10216): Setting CPU Count for VM. (8)
2025-04-13 08:07:55 (10216): Setting Chipset Options for VM.
2025-04-13 08:07:55 (10216): Setting Graphics Controller Options for VM.
2025-04-13 08:07:55 (10216): Setting Boot Options for VM.
2025-04-13 08:07:55 (10216): Setting Network Configuration for NAT.
2025-04-13 08:07:56 (10216): Enabling VM Network Access.
2025-04-13 08:07:56 (10216): Disabling USB Support for VM.
2025-04-13 08:07:56 (10216): Disabling COM Port Support for VM.
2025-04-13 08:07:57 (10216): Disabling LPT Port Support for VM.
2025-04-13 08:07:57 (10216): Disabling Audio Support for VM.
2025-04-13 08:07:57 (10216): Disabling Clipboard Support for VM.
2025-04-13 08:07:57 (10216): Disabling Drag and Drop Support for VM.
2025-04-13 08:07:58 (10216): Adding storage controller(s) to VM.
2025-04-13 08:07:58 (10216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-13 08:08:01 (10216): Adding VirtualBox Guest Additions to VM.
2025-04-13 08:08:01 (10216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-13 08:08:01 (10216): forwarding host port 50039 to guest port 80
2025-04-13 08:08:02 (10216): Enabling remote desktop for VM.
2025-04-13 08:08:02 (10216): Required extension pack not installed, remote desktop not enabled.
2025-04-13 08:08:02 (10216): Enabling shared directory for VM.
2025-04-13 08:08:02 (10216): Starting VM using VBoxManage interface. (boinc_c4332945c3a4b5ee, slot#1)
2025-04-13 08:08:08 (10216): Successfully started VM. (PID = '3528')
2025-04-13 08:08:08 (10216): Reporting VM Process ID to BOINC.
2025-04-13 08:08:08 (10216): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-13 08:08:08 (10216): Guest Log: CPUID EDX: 0x178bfbff
2025-04-13 08:08:08 (10216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-13 08:08:08 (10216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-13 08:08:08 (10216): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-13 08:08:08 (10216): Detected: Web Application Enabled (http://localhost:50039)
2025-04-13 08:08:08 (10216): Preference change detected
2025-04-13 08:08:08 (10216): Setting CPU throttle for VM. (75%)
2025-04-13 08:08:08 (10216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-13 08:08:10 (10216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-13 08:08:10 (10216): Guest Log: BIOS: Booting from Hard Disk...
2025-04-13 08:08:14 (10216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-13 08:08:14 (10216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-13 08:08:14 (10216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-13 08:08:22 (10216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-13 08:08:22 (10216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-13 08:08:31 (10216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000151 main     Log opened 2025-04-13T08:08:28.912832000Z
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000239 main     OS Product: Linux
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000270 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000298 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000326 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000327 main     Process ID: 1370
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.000328 main     Package type: LINUX_64BITS_GENERIC
2025-04-13 08:08:31 (10216): Guest Log: 00:00:00.001507 main     5.2.32 r132073 started. Verbose level = 0
2025-04-13 08:08:31 (10216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-13 08:08:31 (10216): Guest Log: [INFO] Mounting shared directory
2025-04-13 08:08:31 (10216): Guest Log: [INFO] Checking for init_data.xml
2025-04-13 08:08:37 (10216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-13 08:08:37 (10216): Guest Log: [INFO] Detected branch: prod
2025-04-13 08:08:37 (10216): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-13 08:08:37 (10216): Guest Log: Copying input files
2025-04-13 08:08:39 (10216): Guest Log: Copied input files into RunAtlas.
2025-04-13 08:08:39 (10216): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-13 08:08:39 (10216): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-13 08:08:39 (10216): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-13 08:08:39 (10216): Guest Log: Further information can be found at the LHC@home message board.
2025-04-13 08:08:41 (10216): Guest Log: 00:00:10.008643 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 066 589 000ns (GuestNow=1 744 520 920 849 276 000 ns GuestLast=1 744 531 708 915 865 000 ns fSetTimeLastLoop=true )
2025-04-13 08:08:49 (10216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-13 08:08:50 (10216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-13 08:08:50 (10216): Guest Log: 2.6.3.0 1648 0 32052 144799 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-13 08:08:54 (10216): Guest Log: copied the webapp to /var/www
2025-04-13 08:08:54 (10216): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-13 08:08:54 (10216): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-13 08:08:54 (10216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-13 08:08:55 (10216): Guest Log:  *** Starting ATLAS job. (PandaID=6600378792 taskID=44075164) ***
2025-04-13 09:48:18 (10216): Status Report: Elapsed Time: '6000.000000'
2025-04-13 09:48:18 (10216): Status Report: CPU Time: '6453.140625'
2025-04-13 10:42:43 (10216): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 10:43:03 (10216): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 10:43:33 (10216): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 10:43:53 (10216): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 10:57:44 (10216): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 10:58:04 (10216): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 10:58:14 (10216): VM state change detected. (old = 'running', new = 'paused')
2025-04-13 10:58:34 (10216): VM state change detected. (old = 'paused', new = 'running')
2025-04-13 11:00:54 (10216): Guest Log:  *** Job finished ***
2025-04-13 11:00:54 (10216): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:23,085 | INFO     | [data] queue_monitor thread has finished
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:25,931 | INFO     | job.realtimelogging is not enabled
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:26,963 | INFO     | [payload] run_realtimelog thread has finished
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:27,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641978115904)>', '<ExcThread(monitor, started 139641223096064)>']
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:28,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:28,040 | INFO     | [monitor] control thread has ended
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,071 | INFO     | all workflow threads have been joined
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,072 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,073 | INFO     | traces error code: 0
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,212 [wrapper] ==== pilot stdout END ====
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,217 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,220 [wrapper] pilotpid: 6007
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,224 [wrapper] Pilot exit status: 0
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,399 [wrapper] pandaids: 6600378792
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,507 [wrapper] cleanup supervisor_pilot  6472 6008
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,522 [wrapper] Test setup, not cleaning
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,527 [wrapper] apfmon messages muted
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,532 [wrapper] ==== wrapper stdout END ====
2025-04-13 11:00:54 (10216): Guest Log: 2025-04-13 07:59:32,536 [wrapper] ==== wrapper stderr END ====
2025-04-13 11:00:54 (10216): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 11:00:54 (10216): Guest Log:     "exeErrorCode": 0,
2025-04-13 11:00:54 (10216): Guest Log:     "exeErrorDiag": "",
2025-04-13 11:00:54 (10216): Guest Log:     "pilotErrorCode": 0,
2025-04-13 11:00:54 (10216): Guest Log:     "pilotErrorDiag": "",
2025-04-13 11:00:54 (10216): Guest Log:  *** Listing of results directory ***
2025-04-13 11:00:54 (10216): Guest Log: total 198188
2025-04-13 11:00:54 (10216): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 11 21:44 pilot3.tar.gz
2025-04-13 11:00:54 (10216): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 11 21:48 runpilot2-wrapper.sh
2025-04-13 11:00:54 (10216): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 11 21:48 queuedata.json
2025-04-13 11:00:54 (10216): Guest Log: -rwxr-xr-x. 1 atlas atlas      8108 Apr 13 05:08 init_data.xml
2025-04-13 11:00:54 (10216): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr 13 05:08 input.tar.gz
2025-04-13 11:00:54 (10216): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 13 05:08 start_atlas.sh
2025-04-13 11:00:54 (10216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 13 05:08 EVNT.44075162._001211.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 11:00:54 (10216): Guest Log: -rw-r--r--. 1 atlas atlas      2551 Apr 13 05:08 pandaJob.out
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas       424 Apr 13 05:08 setup.sh.local
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas    985800 Apr 13 05:09 agis_schedconf.cvmfs.json
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 05:09 agis_ddmendpoints.agis.ALL.json
2025-04-13 11:00:54 (10216): Guest Log: drwx------. 4 atlas atlas      4096 Apr 13 05:10 pilot3
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas 196775548 Apr 13 07:58 HITS.44075164._031561.pool.root.1
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 07:58 pilot_heartbeat.json
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 13 07:59 memory_monitor_summary.json
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas    344240 Apr 13 07:59 log.44075164._031561.job.log.tgz.1
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas      7726 Apr 13 07:59 heartbeat.json
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 13 07:59 pilotlog.txt
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas    853635 Apr 13 07:59 log.44075164._031561.job.log.1
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 07:59 output.list
2025-04-13 11:00:54 (10216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 07:59 runtime_log
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas   1218560 Apr 13 07:59 result.tar.gz
2025-04-13 11:00:54 (10216): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr 13 07:59 runtime_log.err
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas       658 Apr 13 07:59 Bv1MDmYPbN7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm9HxKDmWHO9wn.diag
2025-04-13 11:00:54 (10216): Guest Log: Looking for outputfile HITS.44075164._031561.pool.root.1
2025-04-13 11:00:54 (10216): Guest Log: HITS file was successfully produced
2025-04-13 11:00:54 (10216): Guest Log: -rw-------. 1 atlas atlas 196775548 Apr 13 07:58 /home/atlas/RunAtlas/HITS.44075164._031561.pool.root.1
2025-04-13 11:00:55 (10216): Guest Log: Successfully finished the ATLAS job!
2025-04-13 11:00:55 (10216): Guest Log: Copying the results back to the shared directory!
2025-04-13 11:00:55 (10216): Guest Log:  *** Contents of shared directory: ***
2025-04-13 11:00:56 (10216): Guest Log: total 411592
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root 222932249 Apr 13 05:07 ATLAS.root_0
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root 196775548 Apr 13  2025 HITS.pool.root.1
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root      8108 Apr 13 05:07 init_data.xml
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr 12 17:01 input.tar.gz
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root   1218560 Apr 13  2025 result.tar.gz
2025-04-13 11:00:56 (10216): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 12 17:01 start_atlas.sh
2025-04-13 11:00:56 (10216): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 11:00:56 (10216): VM Completion File Detected.
2025-04-13 11:00:56 (10216): Powering off VM.
2025-04-13 11:00:57 (10216): Successfully stopped VM.
2025-04-13 11:00:57 (10216): Deregistering VM. (boinc_c4332945c3a4b5ee, slot#1)
2025-04-13 11:00:57 (10216): Removing network bandwidth throttle group from VM.
2025-04-13 11:00:57 (10216): Removing VM from VirtualBox.
11:01:03 (10216): called boinc_finish(0)

</stderr_txt>
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