Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:43:48 (27158): wrapper (7.7.26015): starting
12:43:48 (27158): wrapper: running run_atlas (--nthreads 10)
[2025-04-12 12:43:48] Arguments: --nthreads 10
[2025-04-12 12:43:48] Threads: 10
[2025-04-12 12:43:48] Checking for CVMFS
[2025-04-12 12:43:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 12:43:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 12:43:51] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 12:43:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 12:43:55] 2.11.2.0 31676 32524 250312 144776 1 922 10968100 18432001 17394 130560 0 138835984 98.968 331056861 36056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-12 12:43:55] CVMFS is ok
[2025-04-12 12:43:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-12 12:43:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-12 12:43:55] Further information can be found at the LHC@home message board.
[2025-04-12 12:43:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 12:43:55] Checking for apptainer binary...
[2025-04-12 12:43:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-12 12:43:55] Running /usr/bin/apptainer --version
[2025-04-12 12:43:56] apptainer version 1.3.2-1.el7
[2025-04-12 12:43:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 12:44:36] c-210-5.aglt2.org
[2025-04-12 12:44:36] apptainer works
[2025-04-12 12:44:36] Set ATHENA_PROC_NUMBER=10
[2025-04-12 12:44:36] Set ATHENA_CORE_NUMBER=10
[2025-04-12 12:44:36] Starting ATLAS job with PandaID=6600441774
[2025-04-12 12:44:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:00:03 (27158): BOINC client no longer exists - exiting
13:00:03 (27158): timer handler: client dead, exiting
13:09:49 (37876): wrapper (7.7.26015): starting
13:09:49 (37876): wrapper: running run_atlas (--nthreads 10)
[2025-04-12 13:09:49] Arguments: --nthreads 10
[2025-04-12 13:09:49] Threads: 10
[2025-04-12 13:09:49] This job has been restarted, cleaning up previous attempt
[2025-04-12 13:09:50] Checking for CVMFS
[2025-04-12 13:09:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 13:09:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 13:09:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 13:09:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 13:09:54] 2.11.2.0 31676 32550 250184 144776 3 922 13220490 18432001 16021 130560 0 138941502 98.966 331282019 36054 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-12 13:09:54] CVMFS is ok
[2025-04-12 13:09:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-12 13:09:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-12 13:09:54] Further information can be found at the LHC@home message board.
[2025-04-12 13:09:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 13:09:54] Checking for apptainer binary...
[2025-04-12 13:09:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-12 13:09:54] Running /usr/bin/apptainer --version
[2025-04-12 13:09:54] apptainer version 1.3.2-1.el7
[2025-04-12 13:09:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 13:10:17] c-210-5.aglt2.org
[2025-04-12 13:10:17] apptainer works
[2025-04-12 13:10:17] Set ATHENA_PROC_NUMBER=10
[2025-04-12 13:10:17] Set ATHENA_CORE_NUMBER=10
[2025-04-12 13:10:17] Starting ATLAS job with PandaID=6600441774
[2025-04-12 13:10:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-13 11:18:43]  *** The last 200 lines of the pilot log: ***
[2025-04-13 11:18:43] 2025-04-13 15:18:15,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-13 11:18:43] 2025-04-13 15:18:15,311 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-13 11:18:43] 2025-04-13 15:18:15,311 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-13 11:18:43] 2025-04-13 15:18:15,612 | INFO     | fitting pss+swap vs Time
[2025-04-13 11:18:43] 2025-04-13 15:18:15,624 | INFO     | sum of square deviations: 676549943382.0792
[2025-04-13 11:18:43] 2025-04-13 15:18:15,824 | INFO     | sum of deviations: 1621574751453.5327
[2025-04-13 11:18:43] 2025-04-13 15:18:15,824 | INFO     | mean x: 1744517826.3284502
[2025-04-13 11:18:43] 2025-04-13 15:18:15,824 | INFO     | mean y: 2534667.5057825753
[2025-04-13 11:18:43] 2025-04-13 15:18:15,824 | INFO     | -- intersect: -4178776835.519829
[2025-04-13 11:18:43] 2025-04-13 15:18:15,825 | INFO     | intersect: -4178776835.519829
[2025-04-13 11:18:43] 2025-04-13 15:18:15,827 | INFO     | chi2: 15.081440334114685
[2025-04-13 11:18:43] 2025-04-13 15:18:15,829 | INFO     | sum of square deviations: 668756220423.2224
[2025-04-13 11:18:43] 2025-04-13 15:18:16,118 | INFO     | sum of deviations: 2078378630206.981
[2025-04-13 11:18:43] 2025-04-13 15:18:16,141 | INFO     | mean x: 1744517673.8335912
[2025-04-13 11:18:43] 2025-04-13 15:18:16,141 | INFO     | mean y: 2543605.5534055727
[2025-04-13 11:18:43] 2025-04-13 15:18:16,141 | INFO     | -- intersect: -5419115502.184778
[2025-04-13 11:18:43] 2025-04-13 15:18:16,141 | INFO     | intersect: -5419115502.184778
[2025-04-13 11:18:43] 2025-04-13 15:18:16,159 | INFO     | chi2: 10.96616691969025
[2025-04-13 11:18:43] 2025-04-13 15:18:16,159 | INFO     | current chi2=10.96616691969025 (change=27.287005241240507 %)
[2025-04-13 11:18:43] 2025-04-13 15:18:16,190 | INFO     | sum of square deviations: 661022355549.3214
[2025-04-13 11:18:43] 2025-04-13 15:18:16,596 | INFO     | sum of deviations: 2069017389367.4646
[2025-04-13 11:18:43] 2025-04-13 15:18:16,596 | INFO     | mean x: 1744517521.3364413
[2025-04-13 11:18:43] 2025-04-13 15:18:16,596 | INFO     | mean y: 2543420.9665889665
[2025-04-13 11:18:43] 2025-04-13 15:18:16,597 | INFO     | -- intersect: -5457842385.05024
[2025-04-13 11:18:43] 2025-04-13 15:18:16,597 | INFO     | intersect: -5457842385.05024
[2025-04-13 11:18:43] 2025-04-13 15:18:16,608 | INFO     | chi2: 10.966283932073837
[2025-04-13 11:18:43] 2025-04-13 15:18:16,608 | INFO     | current chi2=10.966283932073837 (change=-0.0010670308453618953 %)
[2025-04-13 11:18:43] 2025-04-13 15:18:16,608 | INFO     | right removable region: 1286
[2025-04-13 11:18:43] 2025-04-13 15:18:16,643 | INFO     | sum of square deviations: 668755169393.2231
[2025-04-13 11:18:43] 2025-04-13 15:18:16,803 | INFO     | sum of deviations: 1161957932120.6309
[2025-04-13 11:18:43] 2025-04-13 15:18:16,804 | INFO     | mean x: 1744517978.8335912
[2025-04-13 11:18:43] 2025-04-13 15:18:16,804 | INFO     | mean y: 2543658.607585139
[2025-04-13 11:18:43] 2025-04-13 15:18:16,804 | INFO     | -- intersect: -3028545439.472863
[2025-04-13 11:18:43] 2025-04-13 15:18:16,804 | INFO     | intersect: -3028545439.472863
[2025-04-13 11:18:43] 2025-04-13 15:18:16,806 | INFO     | chi2: 10.715568955712158
[2025-04-13 11:18:43] 2025-04-13 15:18:16,806 | INFO     | current chi2=10.715568955712158 (change=28.948636746099055 %)
[2025-04-13 11:18:43] 2025-04-13 15:18:16,808 | INFO     | sum of square deviations: 661020489554.2954
[2025-04-13 11:18:43] 2025-04-13 15:18:16,926 | INFO     | sum of deviations: 803806748826.6611
[2025-04-13 11:18:43] 2025-04-13 15:18:16,930 | INFO     | mean x: 1744518131.3387723
[2025-04-13 11:18:43] 2025-04-13 15:18:16,930 | INFO     | mean y: 2550719.0007770006
[2025-04-13 11:18:43] 2025-04-13 15:18:16,930 | INFO     | -- intersect: -2118798724.1398976
[2025-04-13 11:18:43] 2025-04-13 15:18:16,930 | INFO     | intersect: -2118798724.1398976
[2025-04-13 11:18:43] 2025-04-13 15:18:16,949 | INFO     | chi2: 8.12646459801138
[2025-04-13 11:18:43] 2025-04-13 15:18:16,950 | INFO     | current chi2=8.12646459801138 (change=24.16208013220429 %)
[2025-04-13 11:18:43] 2025-04-13 15:18:16,950 | INFO     | left removable region: 20
[2025-04-13 11:18:43] 2025-04-13 15:18:16,952 | INFO     | sum of square deviations: 629188048377.1227
[2025-04-13 11:18:43] 2025-04-13 15:18:17,022 | INFO     | monitor loop #3438: job 0:6600441774 is in state 'finished'
[2025-04-13 11:18:43] 2025-04-13 15:18:17,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 11:18:43] 2025-04-13 15:18:17,411 | INFO     | sum of deviations: 680675057600.5182
[2025-04-13 11:18:43] 2025-04-13 15:18:17,411 | INFO     | mean x: 1744518100.85703
[2025-04-13 11:18:43] 2025-04-13 15:18:17,412 | INFO     | mean y: 2571253.62164297
[2025-04-13 11:18:43] 2025-04-13 15:18:17,412 | INFO     | -- intersect: -1884702291.7815459
[2025-04-13 11:18:43] 2025-04-13 15:18:17,412 | INFO     | intersect: -1884702291.7815459
[2025-04-13 11:18:43] 2025-04-13 15:18:17,442 | INFO     | chi2: 0.6571568959465658
[2025-04-13 11:18:43] 2025-04-13 15:18:17,442 | INFO     | -- intersect: -1884702291.7815459
[2025-04-13 11:18:43] 2025-04-13 15:18:17,442 | INFO     | current memory leak: 1.08 B/s (using 1266 data points, chi2=0.66)
[2025-04-13 11:18:43] 2025-04-13 15:18:17,472 | INFO     | ..............................
[2025-04-13 11:18:43] 2025-04-13 15:18:17,473 | INFO     | . Timing measurements:
[2025-04-13 11:18:43] 2025-04-13 15:18:17,504 | INFO     | . get job = 1 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,504 | INFO     | . initial setup = 8 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,504 | INFO     | . payload setup = 99 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,504 | INFO     | . stage-in = 0 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,505 | INFO     | . payload execution = 79208 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,505 | INFO     | . stage-out = 11 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,505 | INFO     | . log creation = 3 s
[2025-04-13 11:18:43] 2025-04-13 15:18:17,505 | INFO     | ..............................
[2025-04-13 11:18:43] 2025-04-13 15:18:18,432 | INFO     | 
[2025-04-13 11:18:43] 2025-04-13 15:18:18,432 | INFO     | job summary report
[2025-04-13 11:18:43] 2025-04-13 15:18:18,432 | INFO     | --------------------------------------------------
[2025-04-13 11:18:43] 2025-04-13 15:18:18,432 | INFO     | PanDA job id: 6600441774
[2025-04-13 11:18:43] 2025-04-13 15:18:18,432 | INFO     | task id: 44075164
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | errors: (none)
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | pilot state: finished 
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | transexitcode: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | exeerrorcode: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | exeerrordiag: 
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | exitcode: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | exitmsg: OK
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | cpuconsumptiontime: 59374 s
[2025-04-13 11:18:43] 2025-04-13 15:18:18,433 | INFO     | nevents: 400
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | neventsw: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | pid: 8858
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | pgrp: 8858
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | corecount: 10
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | event service: False
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | sizes: {0: 2417103, 1: 2417131, 2: 2417302, 3: 2417330, 4: 2417358, 15: 2417386, 26: 2417542, 37: 2417570, 49: 2417598, 59: 2417626, 66: 2417860, 71: 2418168, 7931
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | --------------------------------------------------
[2025-04-13 11:18:43] 2025-04-13 15:18:18,434 | INFO     | 
[2025-04-13 11:18:43] 2025-04-13 15:18:18,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-13 11:18:43] 2025-04-13 15:18:18,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,775 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,775 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,775 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,775 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-13 11:18:43] 2025-04-13 15:18:18,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-13 11:18:43] 2025-04-13 15:18:18,781 | INFO     | job 6600441774 has completed (purged errors)
[2025-04-13 11:18:43] 2025-04-13 15:18:18,782 | INFO     | overall cleanup function is called
[2025-04-13 11:18:43] 2025-04-13 15:18:19,817 | INFO     | --- collectZombieJob: --- 10, [8858]
[2025-04-13 11:18:43] 2025-04-13 15:18:19,817 | INFO     | zombie collector waiting for pid 8858
[2025-04-13 11:18:43] 2025-04-13 15:18:19,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-13 11:18:43] 2025-04-13 15:18:19,817 | INFO     | collected zombie processes
[2025-04-13 11:18:43] 2025-04-13 15:18:19,817 | INFO     | will attempt to kill all subprocesses of pid=8858
[2025-04-13 11:18:43] 2025-04-13 15:18:22,912 | INFO     | process IDs to be killed: [8858] (in reverse order)
[2025-04-13 11:18:43] 2025-04-13 15:18:23,216 | WARNING  | found no corresponding commands to process id(s)
[2025-04-13 11:18:43] 2025-04-13 15:18:23,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-13 11:18:43] 2025-04-13 15:18:23,234 | INFO     | did not find any defunct processes belonging to 8858
[2025-04-13 11:18:43] 2025-04-13 15:18:23,271 | INFO     | did not find any defunct processes belonging to 8858
[2025-04-13 11:18:43] 2025-04-13 15:18:23,272 | INFO     | ready for new job
[2025-04-13 11:18:43] 2025-04-13 15:18:23,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-13 11:18:43] 2025-04-13 15:18:23,276 | INFO     | **************************************
[2025-04-13 11:18:43] 2025-04-13 15:18:23,276 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-13 11:18:43] 2025-04-13 15:18:23,276 | INFO     | **************************************
[2025-04-13 11:18:43] 2025-04-13 15:18:23,276 | INFO     | 
[2025-04-13 11:18:43] 2025-04-13 15:18:23,281 | INFO     | architecture information:
[2025-04-13 11:18:43] 2025-04-13 15:18:23,286 | INFO     | executing command: cat /etc/os-release
[2025-04-13 11:18:43] 2025-04-13 15:18:23,423 | INFO     | cat /etc/os-release:
[2025-04-13 11:18:43] NAME="CentOS Linux"
[2025-04-13 11:18:43] VERSION="7 (Core)"
[2025-04-13 11:18:43] ID="centos"
[2025-04-13 11:18:43] ID_LIKE="rhel fedora"
[2025-04-13 11:18:43] VERSION_ID="7"
[2025-04-13 11:18:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-13 11:18:43] ANSI_COLOR="0;31"
[2025-04-13 11:18:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-13 11:18:43] HOME_URL="https://www.centos.org/"
[2025-04-13 11:18:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-13 11:18:43] 
[2025-04-13 11:18:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-13 11:18:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-13 11:18:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-13 11:18:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-13 11:18:43] 
[2025-04-13 11:18:43] 2025-04-13 15:18:23,424 | INFO     | **************************************
[2025-04-13 11:18:43] 2025-04-13 15:18:23,926 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-13 11:18:43] 2025-04-13 15:18:24,168 | INFO     | sufficient remaining disk space (56953405440 B)
[2025-04-13 11:18:43] 2025-04-13 15:18:24,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-13 11:18:43] 2025-04-13 15:18:24,175 | INFO     | current server update state: UPDATING_FINAL
[2025-04-13 11:18:43] 2025-04-13 15:18:24,176 | INFO     | update_server=False
[2025-04-13 11:18:43] 2025-04-13 15:18:24,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-13 11:18:43] 2025-04-13 15:18:24,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-13 11:18:43] 2025-04-13 15:18:24,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-13 11:18:43] 2025-04-13 15:18:24,571 | INFO     | found 0 job(s) in 20 queues
[2025-04-13 11:18:43] 2025-04-13 15:18:24,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-13 11:18:43] 2025-04-13 15:18:24,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-13 11:18:43] 2025-04-13 15:18:24,611 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-13 11:18:43] 2025-04-13 15:18:24,611 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-13 11:18:43] 2025-04-13 15:18:24,611 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-13 11:18:43] 2025-04-13 15:18:24,611 | INFO     | will abort loop
[2025-04-13 11:18:43] 2025-04-13 15:18:24,736 | INFO     | all job control threads have been joined
[2025-04-13 11:18:43] 2025-04-13 15:18:25,038 | INFO     | all data control threads have been joined
[2025-04-13 11:18:43] 2025-04-13 15:18:25,182 | INFO     | [job] retrieve thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,191 | INFO     | [job] queue monitor thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,345 | INFO     | all payload control threads have been joined
[2025-04-13 11:18:43] 2025-04-13 15:18:25,617 | INFO     | [job] job monitor thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,741 | INFO     | [job] control thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,817 | INFO     | [data] copytool_in thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,824 | INFO     | [job] validate thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,834 | INFO     | [job] create_data_payload thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:25,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,044 | INFO     | [data] control thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,249 | INFO     | [payload] validate_pre thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-13 11:18:43] 2025-04-13 15:18:26,357 | INFO     | [payload] control thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,508 | INFO     | [payload] validate_post thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,516 | INFO     | [payload] failed_post thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,538 | INFO     | [data] copytool_out thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:26,545 | INFO     | [payload] execute_payloads thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:30,271 | INFO     | [data] queue_monitor thread has finished
[2025-04-13 11:18:43] 2025-04-13 15:18:32,305 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693888407360)>', '<ExcThread(monitor, started 140693288756992)>']
[2025-04-13 11:18:43] 2025-04-13 15:18:32,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-13 11:18:43] 2025-04-13 15:18:32,619 | INFO     | [monitor] control thread has ended
[2025-04-13 11:18:43] 2025-04-13 15:18:37,331 | INFO     | all workflow threads have been joined
[2025-04-13 11:18:43] 2025-04-13 15:18:37,331 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-13 11:18:43] 2025-04-13 15:18:37,331 | INFO     | traces error code: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:37,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-13 11:18:43] 2025-04-13 15:18:39,608 [wrapper] ==== pilot stdout END ====
[2025-04-13 11:18:43] 2025-04-13 15:18:39,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-13 11:18:43] 2025-04-13 15:18:39,660 [wrapper] pilotpid: 7509
[2025-04-13 11:18:43] 2025-04-13 15:18:39,700 [wrapper] Pilot exit status: 0
[2025-04-13 11:18:43] 2025-04-13 15:18:40,037 [wrapper] pandaids: 6600441774 6600441774
[2025-04-13 11:18:43] 2025-04-13 15:18:41,169 [wrapper] cleanup supervisor_pilot 33227 7510
[2025-04-13 11:18:43] 2025-04-13 15:18:41,216 [wrapper] Test setup, not cleaning
[2025-04-13 11:18:43] 2025-04-13 15:18:41,258 [wrapper] apfmon messages muted
[2025-04-13 11:18:43] 2025-04-13 15:18:41,381 [wrapper] ==== wrapper stdout END ====
[2025-04-13 11:18:43] 2025-04-13 15:18:41,419 [wrapper] ==== wrapper stderr END ====
[2025-04-13 11:18:43]  *** Error codes and diagnostics ***
[2025-04-13 11:18:43]     "exeErrorCode": 0,
[2025-04-13 11:18:43]     "exeErrorDiag": "",
[2025-04-13 11:18:43]     "pilotErrorCode": 0,
[2025-04-13 11:18:43]     "pilotErrorDiag": "",
[2025-04-13 11:18:43]  *** Listing of results directory ***
[2025-04-13 11:18:43] total 638604
[2025-04-13 11:18:43] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas    495897 Apr 12 08:54 pilot3.tar.gz
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas      5111 Apr 12 09:09 queuedata.json
[2025-04-13 11:18:43] -rwx------ 1 boincer umatlas     37140 Apr 12 09:10 runpilot2-wrapper.sh
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas       100 Apr 12 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-13 11:18:43] -rwxr-xr-x 1 boincer umatlas      7986 Apr 12 12:43 run_atlas
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas       105 Apr 12 12:43 job.xml
[2025-04-13 11:18:43] -rw-r--r-- 3 boincer umatlas 220031267 Apr 12 12:43 EVNT.44075162._001738.pool.root.1
[2025-04-13 11:18:43] -rw-r--r-- 3 boincer umatlas 220031267 Apr 12 12:43 ATLAS.root_0
[2025-04-13 11:18:43] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 12:43 start_atlas.sh
[2025-04-13 11:18:43] drwxrwx--x 2 boincer umatlas      4096 Apr 12 12:43 shared
[2025-04-13 11:18:43] -rw-r--r-- 2 boincer umatlas    508879 Apr 12 12:43 input.tar.gz
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas         0 Apr 12 12:43 boinc_lockfile
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas      2548 Apr 12 13:10 pandaJob.out
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas       467 Apr 12 13:10 setup.sh.local
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas    986068 Apr 12 13:12 agis_schedconf.cvmfs.json
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas      6229 Apr 13 11:10 init_data.xml
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas 198181207 Apr 13 11:11 HITS.44075164._044739.pool.root.1
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas       531 Apr 13 11:12 boinc_task_state.xml
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas      1060 Apr 13 11:16 memory_monitor_summary.json
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas   1603529 Apr 13 11:16 agis_ddmendpoints.agis.ALL.json
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas    883071 Apr 13 11:16 log.44075164._044739.job.log.tgz.1
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas        96 Apr 13 11:17 pilot_heartbeat.json
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas      7752 Apr 13 11:18 heartbeat.json
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas      4539 Apr 13 11:18 pilotlog.txt
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas      8192 Apr 13 11:18 boinc_mmap_file
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas        28 Apr 13 11:18 wrapper_checkpoint.txt
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas   5039528 Apr 13 11:18 log.44075164._044739.job.log.1
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas       357 Apr 13 11:18 output.list
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas       620 Apr 13 11:18 runtime_log
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas   5939200 Apr 13 11:18 result.tar.gz
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas     11501 Apr 13 11:18 runtime_log.err
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas       788 Apr 13 11:18 3TfMDmOopN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmsWRLDmg7kHXn.diag
[2025-04-13 11:18:43] -rw-r--r-- 1 boincer umatlas     23215 Apr 13 11:18 stderr.txt
[2025-04-13 11:18:43] HITS file was successfully produced:
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas 198181207 Apr 13 11:11 shared/HITS.pool.root.1
[2025-04-13 11:18:43]  *** Contents of shared directory: ***
[2025-04-13 11:18:43] total 414740
[2025-04-13 11:18:43] -rw-r--r-- 3 boincer umatlas 220031267 Apr 12 12:43 ATLAS.root_0
[2025-04-13 11:18:43] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 12:43 start_atlas.sh
[2025-04-13 11:18:43] -rw-r--r-- 2 boincer umatlas    508879 Apr 12 12:43 input.tar.gz
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas 198181207 Apr 13 11:11 HITS.pool.root.1
[2025-04-13 11:18:43] -rw------- 1 boincer umatlas   5939200 Apr 13 11:18 result.tar.gz
11:18:45 (37876): run_atlas exited; CPU time 62210.799349
11:18:45 (37876): called boinc_finish(0)

</stderr_txt>
]]>

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