Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:38:11 (34006): wrapper (7.7.26015): starting
12:38:11 (34006): wrapper: running run_atlas (--nthreads 10)
[2025-04-12 12:38:11] Arguments: --nthreads 10
[2025-04-12 12:38:11] Threads: 10
[2025-04-12 12:38:11] Checking for CVMFS
[2025-04-12 12:38:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 12:38:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 12:38:13] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 12:38:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 12:38:15] 2.11.2.0 5745 14900 294748 144776 0 908 15337713 18432001 20267 130560 0 63021386 98.786 174873117 36271 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-12 12:38:15] CVMFS is ok
[2025-04-12 12:38:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-12 12:38:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-12 12:38:15] Further information can be found at the LHC@home message board.
[2025-04-12 12:38:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 12:38:15] Checking for apptainer binary...
[2025-04-12 12:38:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-12 12:38:15] Running /usr/bin/apptainer --version
[2025-04-12 12:38:15] apptainer version 1.3.2-1.el7
[2025-04-12 12:38:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 12:39:11] c-210-20.aglt2.org
[2025-04-12 12:39:11] apptainer works
[2025-04-12 12:39:11] Set ATHENA_PROC_NUMBER=10
[2025-04-12 12:39:11] Set ATHENA_CORE_NUMBER=10
[2025-04-12 12:39:11] Starting ATLAS job with PandaID=6600415665
[2025-04-12 12:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:03 (34006): BOINC client no longer exists - exiting
04:40:03 (34006): timer handler: client dead, exiting
04:47:17 (4546): wrapper (7.7.26015): starting
04:47:17 (4546): wrapper: running run_atlas (--nthreads 10)
[2025-04-13 04:47:17] Arguments: --nthreads 10
[2025-04-13 04:47:17] Threads: 10
[2025-04-13 04:47:17] This job has been restarted, cleaning up previous attempt
[2025-04-13 04:47:18] Checking for CVMFS
[2025-04-13 04:47:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-13 04:47:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-13 04:47:21] Running cvmfs_config stat atlas.cern.ch
[2025-04-13 04:47:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-13 04:47:23] 2.11.2.0 5745 15869 269104 144804 0 113 14087533 18432001 13497 130560 0 65735370 98.803 179928638 36260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-13 04:47:23] CVMFS is ok
[2025-04-13 04:47:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-13 04:47:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-13 04:47:23] Further information can be found at the LHC@home message board.
[2025-04-13 04:47:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-13 04:47:23] Checking for apptainer binary...
[2025-04-13 04:47:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-13 04:47:23] Running /usr/bin/apptainer --version
[2025-04-13 04:47:24] apptainer version 1.3.2-1.el7
[2025-04-13 04:47:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-13 04:47:52] c-210-20.aglt2.org
[2025-04-13 04:47:52] apptainer works
[2025-04-13 04:47:52] Set ATHENA_PROC_NUMBER=10
[2025-04-13 04:47:52] Set ATHENA_CORE_NUMBER=10
[2025-04-13 04:47:53] Starting ATLAS job with PandaID=6600415665
[2025-04-13 04:47:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-13 22:43:28]  *** The last 200 lines of the pilot log: ***
[2025-04-13 22:43:28] 2025-04-14 02:43:06,764 | INFO     | extracted standard info from prmon json
[2025-04-13 22:43:28] 2025-04-14 02:43:06,764 | INFO     | extracted standard memory fields from prmon json
[2025-04-13 22:43:28] 2025-04-14 02:43:06,764 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-13 22:43:28] 2025-04-14 02:43:06,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-13 22:43:28] 2025-04-14 02:43:06,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-13 22:43:28] 2025-04-14 02:43:06,784 | INFO     | fitting pss+swap vs Time
[2025-04-13 22:43:28] 2025-04-14 02:43:06,786 | INFO     | sum of square deviations: 355889003136.8267
[2025-04-13 22:43:28] 2025-04-14 02:43:06,812 | INFO     | sum of deviations: 2368740348272.9736
[2025-04-13 22:43:28] 2025-04-14 02:43:06,813 | INFO     | mean x: 1744566589.2397325
[2025-04-13 22:43:28] 2025-04-14 02:43:06,813 | INFO     | mean y: 2494374.4861509074
[2025-04-13 22:43:28] 2025-04-14 02:43:06,813 | INFO     | -- intersect: -11609062132.620495
[2025-04-13 22:43:28] 2025-04-14 02:43:06,813 | INFO     | intersect: -11609062132.620495
[2025-04-13 22:43:28] 2025-04-14 02:43:06,815 | INFO     | chi2: 18.394319887760712
[2025-04-13 22:43:28] 2025-04-14 02:43:06,816 | INFO     | sum of square deviations: 350814968991.60516
[2025-04-13 22:43:28] 2025-04-14 02:43:07,109 | INFO     | sum of deviations: 2505063529077.2827
[2025-04-13 22:43:28] 2025-04-14 02:43:07,134 | INFO     | mean x: 1744566436.7456813
[2025-04-13 22:43:28] 2025-04-14 02:43:07,134 | INFO     | mean y: 2498458.563339731
[2025-04-13 22:43:28] 2025-04-14 02:43:07,134 | INFO     | -- intersect: -12454922521.236683
[2025-04-13 22:43:28] 2025-04-14 02:43:07,135 | INFO     | intersect: -12454922521.236683
[2025-04-13 22:43:28] 2025-04-14 02:43:07,156 | INFO     | chi2: 16.77828331843542
[2025-04-13 22:43:28] 2025-04-14 02:43:07,157 | INFO     | current chi2=16.77828331843542 (change=8.78551954726294 %)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,169 | INFO     | right removable region: 1041
[2025-04-13 22:43:28] 2025-04-14 02:43:07,195 | INFO     | sum of square deviations: 350814177211.6056
[2025-04-13 22:43:28] 2025-04-14 02:43:07,373 | INFO     | sum of deviations: 1986115844343.7893
[2025-04-13 22:43:28] 2025-04-14 02:43:07,374 | INFO     | mean x: 1744566741.7456813
[2025-04-13 22:43:28] 2025-04-14 02:43:07,374 | INFO     | mean y: 2505871.7312859884
[2025-04-13 22:43:28] 2025-04-14 02:43:07,374 | INFO     | -- intersect: -9874266141.408699
[2025-04-13 22:43:28] 2025-04-14 02:43:07,374 | INFO     | intersect: -9874266141.408699
[2025-04-13 22:43:28] 2025-04-14 02:43:07,376 | INFO     | chi2: 13.418787393223685
[2025-04-13 22:43:28] 2025-04-14 02:43:07,376 | INFO     | current chi2=13.418787393223685 (change=27.049287632796187 %)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,377 | INFO     | sum of square deviations: 345787880874.81213
[2025-04-13 22:43:28] 2025-04-14 02:43:07,405 | INFO     | sum of deviations: 1651301964095.3005
[2025-04-13 22:43:28] 2025-04-14 02:43:07,405 | INFO     | mean x: 1744566894.2507231
[2025-04-13 22:43:28] 2025-04-14 02:43:07,405 | INFO     | mean y: 2516029.6027000966
[2025-04-13 22:43:28] 2025-04-14 02:43:07,406 | INFO     | -- intersect: -8328622504.471068
[2025-04-13 22:43:28] 2025-04-14 02:43:07,406 | INFO     | intersect: -8328622504.471068
[2025-04-13 22:43:28] 2025-04-14 02:43:07,435 | INFO     | chi2: 9.745424479526669
[2025-04-13 22:43:28] 2025-04-14 02:43:07,435 | INFO     | current chi2=9.745424479526669 (change=27.374775425326558 %)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,462 | INFO     | sum of square deviations: 340809881014.9757
[2025-04-13 22:43:28] 2025-04-14 02:43:07,508 | INFO     | sum of deviations: 1376690488681.1335
[2025-04-13 22:43:28] 2025-04-14 02:43:07,509 | INFO     | mean x: 1744567046.754845
[2025-04-13 22:43:28] 2025-04-14 02:43:07,509 | INFO     | mean y: 2524441.273255814
[2025-04-13 22:43:28] 2025-04-14 02:43:07,509 | INFO     | -- intersect: -7044597704.895957
[2025-04-13 22:43:28] 2025-04-14 02:43:07,509 | INFO     | intersect: -7044597704.895957
[2025-04-13 22:43:28] 2025-04-14 02:43:07,511 | INFO     | chi2: 7.353817764977153
[2025-04-13 22:43:28] 2025-04-14 02:43:07,511 | INFO     | current chi2=7.353817764977153 (change=24.54081625252793 %)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,511 | INFO     | left removable region: 30
[2025-04-13 22:43:28] 2025-04-14 02:43:07,527 | INFO     | sum of square deviations: 320424723910.1989
[2025-04-13 22:43:28] 2025-04-14 02:43:07,598 | INFO     | sum of deviations: 861457749910.4963
[2025-04-13 22:43:28] 2025-04-14 02:43:07,598 | INFO     | mean x: 1744567321.272008
[2025-04-13 22:43:28] 2025-04-14 02:43:07,598 | INFO     | mean y: 2549262.9327398613
[2025-04-13 22:43:28] 2025-04-14 02:43:07,598 | INFO     | -- intersect: -4687697547.021772
[2025-04-13 22:43:28] 2025-04-14 02:43:07,598 | INFO     | intersect: -4687697547.021772
[2025-04-13 22:43:28] 2025-04-14 02:43:07,600 | INFO     | chi2: 1.0997497830387344
[2025-04-13 22:43:28] 2025-04-14 02:43:07,600 | INFO     | -- intersect: -4687697547.021772
[2025-04-13 22:43:28] 2025-04-14 02:43:07,601 | INFO     | current memory leak: 2.69 B/s (using 1011 data points, chi2=1.10)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,602 | INFO     | ..............................
[2025-04-13 22:43:28] 2025-04-14 02:43:07,602 | INFO     | . Timing measurements:
[2025-04-13 22:43:28] 2025-04-14 02:43:07,603 | INFO     | . get job = 1 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,603 | INFO     | . initial setup = 14 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,603 | INFO     | . payload setup = 135 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,603 | INFO     | . stage-in = 2 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,603 | INFO     | . payload execution = 63978 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,604 | INFO     | . stage-out = 7 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,604 | INFO     | . log creation = 1 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,604 | INFO     | ..............................
[2025-04-13 22:43:28] 2025-04-14 02:43:07,771 | INFO     | 
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | job summary report
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | --------------------------------------------------
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | PanDA job id: 6600415665
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | task id: 44075164
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | errors: (none)
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-13 22:43:28] 2025-04-14 02:43:07,772 | INFO     | pilot state: finished 
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | transexitcode: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | exeerrorcode: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | exeerrordiag: 
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | exitcode: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | exitmsg: OK
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | cpuconsumptiontime: 58871 s
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | nevents: 400
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | neventsw: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | pid: 22709
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | pgrp: 22709
[2025-04-13 22:43:28] 2025-04-14 02:43:07,773 | INFO     | corecount: 10
[2025-04-13 22:43:28] 2025-04-14 02:43:07,774 | INFO     | event service: False
[2025-04-13 22:43:28] 2025-04-14 02:43:07,774 | INFO     | sizes: {0: 2416448, 1: 2417049, 3: 2417133, 4: 2417161, 5: 2417360, 6: 2417572, 18: 2417572, 29: 2417600, 39: 2417628, 50: 2417656, 62: 2417684, 74: 2417992, 77: 2
[2025-04-13 22:43:28] 2025-04-14 02:43:07,774 | INFO     | --------------------------------------------------
[2025-04-13 22:43:28] 2025-04-14 02:43:07,774 | INFO     | 
[2025-04-13 22:43:28] 2025-04-14 02:43:07,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-13 22:43:28] 2025-04-14 02:43:08,135 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,147 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-13 22:43:28] 2025-04-14 02:43:08,148 | INFO     | job 6600415665 has completed (purged errors)
[2025-04-13 22:43:28] 2025-04-14 02:43:08,148 | INFO     | overall cleanup function is called
[2025-04-13 22:43:28] 2025-04-14 02:43:09,198 | INFO     | --- collectZombieJob: --- 10, [22709]
[2025-04-13 22:43:28] 2025-04-14 02:43:09,198 | INFO     | zombie collector waiting for pid 22709
[2025-04-13 22:43:28] 2025-04-14 02:43:09,198 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-13 22:43:28] 2025-04-14 02:43:09,198 | INFO     | collected zombie processes
[2025-04-13 22:43:28] 2025-04-14 02:43:09,199 | INFO     | will attempt to kill all subprocesses of pid=22709
[2025-04-13 22:43:28] 2025-04-14 02:43:10,978 | INFO     | process IDs to be killed: [22709] (in reverse order)
[2025-04-13 22:43:28] 2025-04-14 02:43:11,709 | WARNING  | found no corresponding commands to process id(s)
[2025-04-13 22:43:28] 2025-04-14 02:43:11,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-13 22:43:28] 2025-04-14 02:43:11,743 | INFO     | did not find any defunct processes belonging to 22709
[2025-04-13 22:43:28] 2025-04-14 02:43:11,942 | INFO     | did not find any defunct processes belonging to 22709
[2025-04-13 22:43:28] 2025-04-14 02:43:11,942 | INFO     | ready for new job
[2025-04-13 22:43:28] 2025-04-14 02:43:11,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-13 22:43:28] 2025-04-14 02:43:11,969 | INFO     | **************************************
[2025-04-13 22:43:28] 2025-04-14 02:43:11,970 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-13 22:43:28] 2025-04-14 02:43:11,970 | INFO     | **************************************
[2025-04-13 22:43:28] 2025-04-14 02:43:11,991 | INFO     | 
[2025-04-13 22:43:28] 2025-04-14 02:43:12,009 | INFO     | architecture information:
[2025-04-13 22:43:28] 2025-04-14 02:43:12,017 | INFO     | executing command: cat /etc/os-release
[2025-04-13 22:43:28] 2025-04-14 02:43:12,165 | INFO     | cat /etc/os-release:
[2025-04-13 22:43:28] NAME="CentOS Linux"
[2025-04-13 22:43:28] VERSION="7 (Core)"
[2025-04-13 22:43:28] ID="centos"
[2025-04-13 22:43:28] ID_LIKE="rhel fedora"
[2025-04-13 22:43:28] VERSION_ID="7"
[2025-04-13 22:43:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-13 22:43:28] ANSI_COLOR="0;31"
[2025-04-13 22:43:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-13 22:43:28] HOME_URL="https://www.centos.org/"
[2025-04-13 22:43:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-13 22:43:28] 
[2025-04-13 22:43:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-13 22:43:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-13 22:43:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-13 22:43:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-13 22:43:28] 
[2025-04-13 22:43:28] 2025-04-14 02:43:12,170 | INFO     | **************************************
[2025-04-13 22:43:28] 2025-04-14 02:43:12,675 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-13 22:43:28] 2025-04-14 02:43:12,703 | INFO     | sufficient remaining disk space (56957599744 B)
[2025-04-13 22:43:28] 2025-04-14 02:43:12,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-13 22:43:28] 2025-04-14 02:43:12,704 | INFO     | current server update state: UPDATING_FINAL
[2025-04-13 22:43:28] 2025-04-14 02:43:12,704 | INFO     | update_server=False
[2025-04-13 22:43:28] 2025-04-14 02:43:12,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-13 22:43:28] 2025-04-14 02:43:12,715 | INFO     | all payload control threads have been joined
[2025-04-13 22:43:28] 2025-04-14 02:43:12,767 | INFO     | all data control threads have been joined
[2025-04-13 22:43:28] 2025-04-14 02:43:12,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-13 22:43:28] 2025-04-14 02:43:12,794 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-13 22:43:28] 2025-04-14 02:43:12,794 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-13 22:43:28] 2025-04-14 02:43:12,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-13 22:43:28] 2025-04-14 02:43:12,795 | INFO     | will abort loop
[2025-04-13 22:43:28] 2025-04-14 02:43:13,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-13 22:43:28] 2025-04-14 02:43:13,443 | INFO     | found 0 job(s) in 20 queues
[2025-04-13 22:43:28] 2025-04-14 02:43:13,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-13 22:43:28] 2025-04-14 02:43:13,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-13 22:43:28] 2025-04-14 02:43:13,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-13 22:43:28] 2025-04-14 02:43:13,710 | INFO     | [job] retrieve thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,721 | INFO     | [payload] control thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,753 | INFO     | [payload] failed_post thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,772 | INFO     | [data] control thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,797 | INFO     | all job control threads have been joined
[2025-04-13 22:43:28] 2025-04-14 02:43:13,799 | INFO     | [job] queue monitor thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,800 | INFO     | [job] job monitor thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,948 | INFO     | [payload] validate_pre thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,959 | INFO     | [job] validate thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:13,968 | INFO     | [job] create_data_payload thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:14,023 | INFO     | [data] copytool_in thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:14,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:14,779 | INFO     | [payload] execute_payloads thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:14,803 | INFO     | [job] control thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:15,201 | INFO     | [payload] validate_post thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:15,690 | INFO     | [data] copytool_out thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:17,048 | INFO     | [data] queue_monitor thread has finished
[2025-04-13 22:43:28] 2025-04-14 02:43:19,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140435223029568)>', '<ExcThread(monitor, started 140434399545088)>']
[2025-04-13 22:43:28] 2025-04-14 02:43:19,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-13 22:43:28] 2025-04-14 02:43:19,480 | INFO     | [monitor] control thread has ended
[2025-04-13 22:43:28] 2025-04-14 02:43:24,151 | INFO     | all workflow threads have been joined
[2025-04-13 22:43:28] 2025-04-14 02:43:24,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-13 22:43:28] 2025-04-14 02:43:24,151 | INFO     | traces error code: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:24,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-13 22:43:28] 2025-04-14 02:43:25,430 [wrapper] ==== pilot stdout END ====
[2025-04-13 22:43:28] 2025-04-14 02:43:25,475 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-13 22:43:28] 2025-04-14 02:43:25,521 [wrapper] pilotpid: 27187
[2025-04-13 22:43:28] 2025-04-14 02:43:25,590 [wrapper] Pilot exit status: 0
[2025-04-13 22:43:28] 2025-04-14 02:43:25,822 [wrapper] pandaids: 6600415665 6600415665
[2025-04-13 22:43:28] 2025-04-14 02:43:26,378 [wrapper] cleanup supervisor_pilot 26389 27188
[2025-04-13 22:43:28] 2025-04-14 02:43:26,428 [wrapper] Test setup, not cleaning
[2025-04-13 22:43:28] 2025-04-14 02:43:26,475 [wrapper] apfmon messages muted
[2025-04-13 22:43:28] 2025-04-14 02:43:26,521 [wrapper] ==== wrapper stdout END ====
[2025-04-13 22:43:28] 2025-04-14 02:43:26,559 [wrapper] ==== wrapper stderr END ====
[2025-04-13 22:43:28]  *** Error codes and diagnostics ***
[2025-04-13 22:43:28]     "exeErrorCode": 0,
[2025-04-13 22:43:28]     "exeErrorDiag": "",
[2025-04-13 22:43:28]     "pilotErrorCode": 0,
[2025-04-13 22:43:28]     "pilotErrorDiag": "",
[2025-04-13 22:43:28]  *** Listing of results directory ***
[2025-04-13 22:43:28] total 638044
[2025-04-13 22:43:28] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas      5111 Apr 12 05:26 queuedata.json
[2025-04-13 22:43:28] -rwx------ 1 boincer umatlas     37140 Apr 12 05:27 runpilot2-wrapper.sh
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas    495897 Apr 12 05:27 pilot3.tar.gz
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas       100 Apr 12 12:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-13 22:43:28] -rwxr-xr-x 1 boincer umatlas      7986 Apr 12 12:38 run_atlas
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas       105 Apr 12 12:38 job.xml
[2025-04-13 22:43:28] -rw-r--r-- 3 boincer umatlas 220497755 Apr 12 12:38 EVNT.44075162._001651.pool.root.1
[2025-04-13 22:43:28] -rw-r--r-- 3 boincer umatlas 220497755 Apr 12 12:38 ATLAS.root_0
[2025-04-13 22:43:28] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 12:38 start_atlas.sh
[2025-04-13 22:43:28] drwxrwx--x 2 boincer umatlas      4096 Apr 12 12:38 shared
[2025-04-13 22:43:28] -rw-r--r-- 2 boincer umatlas    508882 Apr 12 12:38 input.tar.gz
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas         0 Apr 12 12:38 boinc_lockfile
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas      2549 Apr 13 04:47 pandaJob.out
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas       467 Apr 13 04:48 setup.sh.local
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas    985800 Apr 13 04:50 agis_schedconf.cvmfs.json
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas      6230 Apr 13 22:37 init_data.xml
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas 198508779 Apr 13 22:39 HITS.44075164._042575.pool.root.1
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas       533 Apr 13 22:40 boinc_task_state.xml
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas      1058 Apr 13 22:41 memory_monitor_summary.json
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas   1603529 Apr 13 22:42 agis_ddmendpoints.agis.ALL.json
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas    802208 Apr 13 22:42 log.44075164._042575.job.log.tgz.1
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas        96 Apr 13 22:42 pilot_heartbeat.json
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas      7753 Apr 13 22:43 heartbeat.json
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas        30 Apr 13 22:43 wrapper_checkpoint.txt
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas      8192 Apr 13 22:43 boinc_mmap_file
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas      4539 Apr 13 22:43 pilotlog.txt
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas   4201444 Apr 13 22:43 log.44075164._042575.job.log.1
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas       357 Apr 13 22:43 output.list
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas       620 Apr 13 22:43 runtime_log
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas   5017600 Apr 13 22:43 result.tar.gz
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas     11506 Apr 13 22:43 runtime_log.err
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas       789 Apr 13 22:43 MY6NDmtJmN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmKARLDmvHGW1m.diag
[2025-04-13 22:43:28] -rw-r--r-- 1 boincer umatlas     23171 Apr 13 22:43 stderr.txt
[2025-04-13 22:43:28] HITS file was successfully produced:
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas 198508779 Apr 13 22:39 shared/HITS.pool.root.1
[2025-04-13 22:43:28]  *** Contents of shared directory: ***
[2025-04-13 22:43:28] total 414620
[2025-04-13 22:43:28] -rw-r--r-- 3 boincer umatlas 220497755 Apr 12 12:38 ATLAS.root_0
[2025-04-13 22:43:28] -rw-r--r-- 2 boincer umatlas     17569 Apr 12 12:38 start_atlas.sh
[2025-04-13 22:43:28] -rw-r--r-- 2 boincer umatlas    508882 Apr 12 12:38 input.tar.gz
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas 198508779 Apr 13 22:39 HITS.pool.root.1
[2025-04-13 22:43:28] -rw------- 1 boincer umatlas   5017600 Apr 13 22:43 result.tar.gz
22:43:29 (4546): run_atlas exited; CPU time 61201.361356
22:43:29 (4546): called boinc_finish(0)

</stderr_txt>
]]>

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