Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 22:39:05 (605344): Detected: vboxwrapper 26206
2025-04-12 22:39:05 (605344): Detected: BOINC client v7.20.2
2025-04-12 22:39:05 (605344): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-12 22:39:05 (605344): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 22:39:05 (605344): Create VM. (boinc_5081d649dfb56df5, slot#2)
2025-04-12 22:39:06 (605344): Setting Memory Size for VM. (4700MB)
2025-04-12 22:39:06 (605344): Setting CPU Count for VM. (7)
2025-04-12 22:39:06 (605344): Setting Chipset Options for VM.
2025-04-12 22:39:06 (605344): Setting Graphics Controller Options for VM.
2025-04-12 22:39:06 (605344): Setting Boot Options for VM.
2025-04-12 22:39:06 (605344): Setting Network Configuration for NAT.
2025-04-12 22:39:06 (605344): Enabling VM Network Access.
2025-04-12 22:39:06 (605344): Disabling USB Support for VM.
2025-04-12 22:39:06 (605344): Disabling COM Port Support for VM.
2025-04-12 22:39:06 (605344): Disabling LPT Port Support for VM.
2025-04-12 22:39:06 (605344): Disabling Audio Support for VM.
2025-04-12 22:39:06 (605344): Disabling Clipboard Support for VM.
2025-04-12 22:39:06 (605344): Disabling Drag and Drop Support for VM.
2025-04-12 22:39:06 (605344): Adding storage controller(s) to VM.
2025-04-12 22:39:07 (605344): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 22:39:08 (605344): Adding VirtualBox Guest Additions to VM.
2025-04-12 22:39:08 (605344): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 22:39:08 (605344): forwarding host port 54209 to guest port 80
2025-04-12 22:39:08 (605344): Enabling remote desktop for VM.
2025-04-12 22:39:08 (605344): Required extension pack not installed, remote desktop not enabled.
2025-04-12 22:39:08 (605344): Enabling shared directory for VM.
2025-04-12 22:39:09 (605344): Starting VM using VBoxManage interface. (boinc_5081d649dfb56df5, slot#2)
2025-04-12 22:39:10 (605344): Successfully started VM. (PID = '605961')
2025-04-12 22:39:10 (605344): Reporting VM Process ID to BOINC.
2025-04-12 22:39:10 (605344): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-12 22:39:10 (605344): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 22:39:10 (605344): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 22:39:10 (605344): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 22:39:10 (605344): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 22:39:10 (605344): Detected: Web Application Enabled (http://localhost:54209)
2025-04-12 22:39:10 (605344): Preference change detected
2025-04-12 22:39:10 (605344): Setting CPU throttle for VM. (90%)
2025-04-12 22:39:10 (605344): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 22:39:12 (605344): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 22:39:12 (605344): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 22:39:15 (605344): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 22:39:15 (605344): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 22:39:15 (605344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 22:39:26 (605344): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 22:39:26 (605344): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 22:39:44 (605344): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000406 main     Log opened 2025-04-12T20:39:43.762559000Z
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000600 main     OS Product: Linux
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000762 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000857 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000948 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000950 main     Process ID: 989
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.000952 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 22:39:44 (605344): Guest Log: 00:00:00.002752 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 22:39:47 (605344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 22:39:47 (605344): Guest Log: [INFO] Mounting shared directory
2025-04-12 22:39:47 (605344): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 22:39:53 (605344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 22:39:53 (605344): Guest Log: [INFO] Detected branch: prod
2025-04-12 22:39:54 (605344): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 22:39:54 (605344): Guest Log: Copying input files
2025-04-12 22:39:58 (605344): Guest Log: Copied input files into RunAtlas.
2025-04-12 22:39:58 (605344): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-12 22:39:58 (605344): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-12 22:39:58 (605344): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-12 22:39:58 (605344): Guest Log: Further information can be found at the LHC@home message board.
2025-04-12 22:40:09 (605344): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 22:40:10 (605344): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 22:40:10 (605344): Guest Log: 2.6.3.0 1638 0 32188 144786 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-12 22:40:13 (605344): Guest Log: copied the webapp to /var/www
2025-04-12 22:40:14 (605344): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-12 22:40:14 (605344): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-12 22:40:14 (605344): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 22:40:14 (605344): Guest Log:  *** Starting ATLAS job. (PandaID=6600398749 taskID=44075164) ***
2025-04-13 00:18:14 (605344): Status Report: Elapsed Time: '6000.000000'
2025-04-13 00:18:14 (605344): Status Report: CPU Time: '39676.450000'
2025-04-13 01:57:20 (605344): Status Report: Elapsed Time: '12000.000000'
2025-04-13 01:57:20 (605344): Status Report: CPU Time: '84905.330000'
2025-04-13 03:36:26 (605344): Status Report: Elapsed Time: '18000.000000'
2025-04-13 03:36:26 (605344): Status Report: CPU Time: '130115.300000'
2025-04-13 05:15:32 (605344): Status Report: Elapsed Time: '24000.000000'
2025-04-13 05:15:32 (605344): Status Report: CPU Time: '175319.730000'
2025-04-13 06:54:37 (605344): Status Report: Elapsed Time: '30000.000000'
2025-04-13 06:54:37 (605344): Status Report: CPU Time: '220567.600000'
2025-04-13 08:33:43 (605344): Status Report: Elapsed Time: '36000.000000'
2025-04-13 08:33:43 (605344): Status Report: CPU Time: '265775.840000'
2025-04-13 09:10:29 (605344): Guest Log:  *** Job finished ***
2025-04-13 09:10:29 (605344): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:20,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:21,615 | INFO     | [job] queue monitor thread has finished
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:21,764 | INFO     | [data] queue_monitor thread has finished
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:21,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049752467264)>', '<ExcThread(monitor, started 140048976553728)>']
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:22,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:22,274 | INFO     | [monitor] control thread has ended
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:26,892 | INFO     | all workflow threads have been joined
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:26,892 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:26,893 | INFO     | traces error code: 0
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:26,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,129 [wrapper] ==== pilot stdout END ====
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,159 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,170 [wrapper] pilotpid: 6000
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,180 [wrapper] Pilot exit status: 0
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,335 [wrapper] pandaids: 6600398749
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,524 [wrapper] cleanup supervisor_pilot 15490 6001
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,570 [wrapper] Test setup, not cleaning
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,596 [wrapper] apfmon messages muted
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,623 [wrapper] ==== wrapper stdout END ====
2025-04-13 09:10:29 (605344): Guest Log: 2025-04-13 07:10:27,655 [wrapper] ==== wrapper stderr END ====
2025-04-13 09:10:29 (605344): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 09:10:29 (605344): Guest Log:     "exeErrorCode": 0,
2025-04-13 09:10:29 (605344): Guest Log:     "exeErrorDiag": "",
2025-04-13 09:10:29 (605344): Guest Log:     "pilotErrorCode": 0,
2025-04-13 09:10:29 (605344): Guest Log:     "pilotErrorDiag": "",
2025-04-13 09:10:29 (605344): Guest Log:  *** Listing of results directory ***
2025-04-13 09:10:29 (605344): Guest Log: total 200252
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 12 07:02 pilot3.tar.gz
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 12 07:06 queuedata.json
2025-04-13 09:10:29 (605344): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 12 07:09 runpilot2-wrapper.sh
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 12 20:39 start_atlas.sh
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas      6439 Apr 12 20:39 init_data.xml
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas    508883 Apr 12 20:39 input.tar.gz
2025-04-13 09:10:29 (605344): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 20:39 EVNT.44075162._001596.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 12 20:40 pandaJob.out
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas       424 Apr 12 20:40 setup.sh.local
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas    985800 Apr 12 20:41 agis_schedconf.cvmfs.json
2025-04-13 09:10:29 (605344): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 20:41 pilot3
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas 194480467 Apr 13 07:08 HITS.44075164._041192.pool.root.1
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 07:09 pilot_heartbeat.json
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas      1037 Apr 13 07:09 memory_monitor_summary.json
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 07:09 agis_ddmendpoints.agis.ALL.json
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas    570210 Apr 13 07:09 log.44075164._041192.job.log.tgz.1
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas      7682 Apr 13 07:10 heartbeat.json
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas      4599 Apr 13 07:10 pilotlog.txt
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas   2833716 Apr 13 07:10 log.44075164._041192.job.log.1
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 07:10 output.list
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 07:10 runtime_log
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas   3420160 Apr 13 07:10 result.tar.gz
2025-04-13 09:10:29 (605344): Guest Log: -rw-r--r--. 1 atlas atlas     10929 Apr 13 07:10 runtime_log.err
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas       661 Apr 13 07:10 RR3NDmyAkN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmxuQLDm4lUrOo.diag
2025-04-13 09:10:29 (605344): Guest Log: Looking for outputfile HITS.44075164._041192.pool.root.1
2025-04-13 09:10:29 (605344): Guest Log: HITS file was successfully produced
2025-04-13 09:10:29 (605344): Guest Log: -rw-------. 1 atlas atlas 194480467 Apr 13 07:08 /home/atlas/RunAtlas/HITS.44075164._041192.pool.root.1
2025-04-13 09:10:30 (605344): Guest Log: Successfully finished the ATLAS job!
2025-04-13 09:10:30 (605344): Guest Log: Copying the results back to the shared directory!
2025-04-13 09:10:30 (605344): Guest Log:  *** Contents of shared directory: ***
2025-04-13 09:10:30 (605344): Guest Log: total 219048
2025-04-13 09:10:30 (605344): Guest Log: -rw-r--r--. 1 root root 220340255 Apr 12 20:39 ATLAS.root_0
2025-04-13 09:10:30 (605344): Guest Log: -rw-r--r--. 1 root root      6439 Apr 12 20:39 init_data.xml
2025-04-13 09:10:30 (605344): Guest Log: -rw-r--r--. 1 root root    508883 Apr 12 20:39 input.tar.gz
2025-04-13 09:10:30 (605344): Guest Log: -rw-r--r--. 1 root root   3420160 Apr 13 07:10 result.tar.gz
2025-04-13 09:10:30 (605344): Guest Log: -rw-r--r--. 1 root root     17569 Apr 12 20:39 start_atlas.sh
2025-04-13 09:10:30 (605344): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 09:10:30 (605344): VM Completion File Detected.
2025-04-13 09:10:30 (605344): Powering off VM.
2025-04-13 09:10:30 (605344): Successfully stopped VM.
2025-04-13 09:10:30 (605344): Deregistering VM. (boinc_5081d649dfb56df5, slot#2)
2025-04-13 09:10:30 (605344): Removing network bandwidth throttle group from VM.
2025-04-13 09:10:30 (605344): Removing VM from VirtualBox.
09:10:35 (605344): called boinc_finish(0)

</stderr_txt>
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