Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 16:17:38 (14192): Detected: vboxwrapper 26206
2025-04-12 16:17:38 (14192): Detected: BOINC client v8.0.2
2025-04-12 16:17:38 (14192): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-12 16:17:38 (14192): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 16:17:39 (14192): Create VM. (boinc_f8bd22fad3283b90, slot#1)
2025-04-12 16:17:40 (14192): Setting Memory Size for VM. (4400MB)
2025-04-12 16:17:40 (14192): Setting CPU Count for VM. (4)
2025-04-12 16:17:40 (14192): Setting Chipset Options for VM.
2025-04-12 16:17:40 (14192): Setting Graphics Controller Options for VM.
2025-04-12 16:17:41 (14192): Setting Boot Options for VM.
2025-04-12 16:17:41 (14192): Setting Network Configuration for NAT.
2025-04-12 16:17:41 (14192): Enabling VM Network Access.
2025-04-12 16:17:41 (14192): Disabling USB Support for VM.
2025-04-12 16:17:42 (14192): Disabling COM Port Support for VM.
2025-04-12 16:17:42 (14192): Disabling LPT Port Support for VM.
2025-04-12 16:17:42 (14192): Disabling Audio Support for VM.
2025-04-12 16:17:43 (14192): Disabling Clipboard Support for VM.
2025-04-12 16:17:43 (14192): Disabling Drag and Drop Support for VM.
2025-04-12 16:17:43 (14192): Adding storage controller(s) to VM.
2025-04-12 16:17:43 (14192): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 16:17:46 (14192): Adding VirtualBox Guest Additions to VM.
2025-04-12 16:17:46 (14192): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 16:17:47 (14192): forwarding host port 52021 to guest port 80
2025-04-12 16:17:47 (14192): Enabling remote desktop for VM.
2025-04-12 16:17:47 (14192): Required extension pack not installed, remote desktop not enabled.
2025-04-12 16:17:47 (14192): Enabling shared directory for VM.
2025-04-12 16:17:48 (14192): Starting VM using VBoxManage interface. (boinc_f8bd22fad3283b90, slot#1)
2025-04-12 16:17:55 (14192): Successfully started VM. (PID = '6124')
2025-04-12 16:17:55 (14192): Reporting VM Process ID to BOINC.
2025-04-12 16:17:55 (14192): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-12 16:17:55 (14192): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 16:17:55 (14192): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 16:17:55 (14192): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 16:17:55 (14192): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 16:17:55 (14192): Detected: Web Application Enabled (http://localhost:52021)
2025-04-12 16:17:55 (14192): Preference change detected
2025-04-12 16:17:55 (14192): Setting CPU throttle for VM. (50%)
2025-04-12 16:17:55 (14192): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 16:17:57 (14192): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 16:17:57 (14192): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 16:18:02 (14192): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 16:18:02 (14192): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 16:18:02 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 16:18:03 (14192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 16:18:12 (14192): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 16:18:12 (14192): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 16:18:24 (14192): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000254 main     Log opened 2025-04-12T16:18:21.857527000Z
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000399 main     OS Product: Linux
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000458 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000507 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000600 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000602 main     Process ID: 1298
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.000603 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 16:18:24 (14192): Guest Log: 00:00:00.002656 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 16:18:24 (14192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 16:18:24 (14192): Guest Log: [INFO] Mounting shared directory
2025-04-12 16:18:24 (14192): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 16:18:28 (14192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 16:18:28 (14192): Guest Log: [INFO] Detected branch: prod
2025-04-12 16:18:28 (14192): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 16:18:28 (14192): Guest Log: Copying input files
2025-04-12 16:18:34 (14192): Guest Log: Copied input files into RunAtlas.
2025-04-12 16:18:34 (14192): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-12 16:18:34 (14192): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-12 16:18:34 (14192): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-12 16:18:34 (14192): Guest Log: Further information can be found at the LHC@home message board.
2025-04-12 16:18:34 (14192): Guest Log: 00:00:10.006076 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 553 393 000ns (GuestNow=1 744 467 513 308 946 000 ns GuestLast=1 744 474 701 862 339 000 ns fSetTimeLastLoop=true )
2025-04-12 16:18:44 (14192): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 16:18:44 (14192): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 16:18:44 (14192): Guest Log: 2.6.3.0 1575 0 32172 144776 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-12 16:18:46 (14192): Guest Log: copied the webapp to /var/www
2025-04-12 16:18:46 (14192): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-12 16:18:46 (14192): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-12 16:18:46 (14192): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 16:18:46 (14192): Guest Log:  *** Starting ATLAS job. (PandaID=6586323668 taskID=43634898) ***
2025-04-12 17:58:00 (14192): Status Report: Elapsed Time: '6000.000000'
2025-04-12 17:58:00 (14192): Status Report: CPU Time: '10187.734375'
2025-04-12 19:38:10 (14192): Status Report: Elapsed Time: '12000.000000'
2025-04-12 19:38:10 (14192): Status Report: CPU Time: '24588.281250'
2025-04-12 21:18:17 (14192): Status Report: Elapsed Time: '18000.000000'
2025-04-12 21:18:17 (14192): Status Report: CPU Time: '38996.140625'
2025-04-12 22:58:23 (14192): Status Report: Elapsed Time: '24000.000000'
2025-04-12 22:58:23 (14192): Status Report: CPU Time: '53399.968750'
2025-04-13 00:38:30 (14192): Status Report: Elapsed Time: '30000.000000'
2025-04-13 00:38:30 (14192): Status Report: CPU Time: '67798.062500'
2025-04-13 02:18:42 (14192): Status Report: Elapsed Time: '36000.000000'
2025-04-13 02:18:42 (14192): Status Report: CPU Time: '82215.281250'
2025-04-13 03:33:57 (14192): Guest Log:  *** Job finished ***
2025-04-13 03:33:57 (14192): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:41,619 | INFO     | [data] queue_monitor thread has finished
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:48,422 | INFO     | job.realtimelogging is not enabled
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:49,424 | INFO     | [payload] run_realtimelog thread has finished
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:50,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686851970880)>', '<ExcThread(monitor, started 140686250718976)>']
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:51,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:51,557 | INFO     | [monitor] control thread has ended
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:55,907 | INFO     | all workflow threads have been joined
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:55,907 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:55,908 | INFO     | traces error code: 0
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:55,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,193 [wrapper] ==== pilot stdout END ====
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,197 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,201 [wrapper] pilotpid: 5903
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,205 [wrapper] Pilot exit status: 0
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,456 [wrapper] pandaids: 6586323668
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,549 [wrapper] cleanup supervisor_pilot 11896 5904
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,555 [wrapper] Test setup, not cleaning
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,559 [wrapper] apfmon messages muted
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,564 [wrapper] ==== wrapper stdout END ====
2025-04-13 03:33:57 (14192): Guest Log: 2025-04-13 01:33:56,568 [wrapper] ==== wrapper stderr END ====
2025-04-13 03:33:57 (14192): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 03:33:57 (14192): Guest Log:     "exeErrorCode": 0,
2025-04-13 03:33:57 (14192): Guest Log:     "exeErrorDiag": "",
2025-04-13 03:33:57 (14192): Guest Log:     "pilotErrorCode": 0,
2025-04-13 03:33:57 (14192): Guest Log:     "pilotErrorDiag": "",
2025-04-13 03:33:57 (14192): Guest Log:  *** Listing of results directory ***
2025-04-13 03:33:57 (14192): Guest Log: total 328468
2025-04-13 03:33:57 (14192): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 20:23 pilot3.tar.gz
2025-04-13 03:33:57 (14192): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 20:46 runpilot2-wrapper.sh
2025-04-13 03:33:57 (14192): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 20:46 queuedata.json
2025-04-13 03:33:57 (14192): Guest Log: -rwxr-xr-x. 1 atlas atlas      9148 Apr 12 14:18 init_data.xml
2025-04-13 03:33:57 (14192): Guest Log: -rwxr-xr-x. 1 atlas atlas    508894 Apr 12 14:18 input.tar.gz
2025-04-13 03:33:57 (14192): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 12 14:18 start_atlas.sh
2025-04-13 03:33:57 (14192): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 14:18 EVNT.43634896._000673.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 03:33:57 (14192): Guest Log: -rw-r--r--. 1 atlas atlas      2600 Apr 12 14:18 pandaJob.out
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas       424 Apr 12 14:18 setup.sh.local
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas    986068 Apr 12 14:19 agis_schedconf.cvmfs.json
2025-04-13 03:33:57 (14192): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 14:19 pilot3
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas 326016939 Apr 13 01:31 HITS.43634898._017568.pool.root.1
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 01:32 pilot_heartbeat.json
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas      1029 Apr 13 01:33 memory_monitor_summary.json
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 01:33 agis_ddmendpoints.agis.ALL.json
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas    510205 Apr 13 01:33 log.43634898._017568.job.log.tgz.1
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas      7726 Apr 13 01:33 heartbeat.json
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas      4794 Apr 13 01:33 pilotlog.txt
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas   2769502 Apr 13 01:33 log.43634898._017568.job.log.1
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 01:33 output.list
2025-04-13 03:33:57 (14192): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 01:33 runtime_log
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas   3297280 Apr 13 01:33 result.tar.gz
2025-04-13 03:33:57 (14192): Guest Log: -rw-r--r--. 1 atlas atlas     11224 Apr 13 01:33 runtime_log.err
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas       752 Apr 13 01:33 25yNDmNdgK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmVzHLDm7ZkAym.diag
2025-04-13 03:33:57 (14192): Guest Log: Looking for outputfile HITS.43634898._017568.pool.root.1
2025-04-13 03:33:57 (14192): Guest Log: HITS file was successfully produced
2025-04-13 03:33:57 (14192): Guest Log: -rw-------. 1 atlas atlas 326016939 Apr 13 01:31 /home/atlas/RunAtlas/HITS.43634898._017568.pool.root.1
2025-04-13 03:34:01 (14192): Guest Log: Successfully finished the ATLAS job!
2025-04-13 03:34:01 (14192): Guest Log: Copying the results back to the shared directory!
2025-04-13 03:34:01 (14192): Guest Log:  *** Contents of shared directory: ***
2025-04-13 03:34:01 (14192): Guest Log: total 672768
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root 359053368 Apr 12 14:17 ATLAS.root_0
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root 326016939 Apr 13 01:34 HITS.pool.root.1
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root      9148 Apr 12 14:17 init_data.xml
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root    508894 Apr 12 07:57 input.tar.gz
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root   3297280 Apr 13 01:34 result.tar.gz
2025-04-13 03:34:01 (14192): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 12 07:57 start_atlas.sh
2025-04-13 03:34:01 (14192): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 03:34:01 (14192): VM Completion File Detected.
2025-04-13 03:34:01 (14192): Powering off VM.
2025-04-13 03:34:02 (14192): Successfully stopped VM.
2025-04-13 03:34:02 (14192): Deregistering VM. (boinc_f8bd22fad3283b90, slot#1)
2025-04-13 03:34:02 (14192): Removing network bandwidth throttle group from VM.
2025-04-13 03:34:02 (14192): Removing VM from VirtualBox.
03:34:07 (14192): called boinc_finish(0)

</stderr_txt>
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