Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:47:15 (3003): wrapper (7.7.26015): starting
06:47:15 (3003): wrapper: running run_atlas (--nthreads 12)
[2025-04-12 06:47:15] Arguments: --nthreads 12
[2025-04-12 06:47:15] Threads: 12
[2025-04-12 06:47:15] Checking for CVMFS
[2025-04-12 06:47:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-12 06:47:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-12 06:47:20] Running cvmfs_config stat atlas.cern.ch
[2025-04-12 06:47:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-12 06:47:20] 2.12.7.0 3212 0 25060 144776 3 1 2494676 4096001 0 130560 0 0 100.000 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-04-12 06:47:20] CVMFS is ok
[2025-04-12 06:47:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-12 06:47:20] Checking for apptainer binary...
[2025-04-12 06:47:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-12 06:47:20] Running /usr/bin/apptainer --version
[2025-04-12 06:47:20] apptainer version 1.3.4
[2025-04-12 06:47:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-12 06:47:21] t610hp
[2025-04-12 06:47:21] apptainer works
[2025-04-12 06:47:21] Set ATHENA_PROC_NUMBER=12
[2025-04-12 06:47:21] Set ATHENA_CORE_NUMBER=12
[2025-04-12 06:47:21] Starting ATLAS job with PandaID=6595038592
[2025-04-12 06:47:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-12 08:27:53]  *** The last 200 lines of the pilot log: ***
[2025-04-12 08:27:53] 2025-04-12 08:27:20,601 | INFO     | adding to output.list: log.44075164._012980.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/d2/log.44075164._012980.job.log.tg
[2025-04-12 08:27:53] 2025-04-12 08:27:20,605 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-12 08:27:53] 2025-04-12 08:27:20,606 | INFO     | summary of transferred files:
[2025-04-12 08:27:53] 2025-04-12 08:27:20,606 | INFO     |  -- lfn=log.44075164._012980.job.log.tgz.1, status_code=0, status=transferred
[2025-04-12 08:27:53] 2025-04-12 08:27:20,606 | INFO     | stage-out finished correctly
[2025-04-12 08:27:53] 2025-04-12 08:27:21,176 | WARNING  | process 14005 can no longer be monitored (due to stat problems) - aborting
[2025-04-12 08:27:53] 2025-04-12 08:27:21,176 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592/memory_monitor_summary.json (trf name=prmon)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,177 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592/memory_monitor_summary.json (trf name=prmon)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,179 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3877398 B
[2025-04-12 08:27:53] 2025-04-12 08:27:21,183 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15345 B
[2025-04-12 08:27:53] 2025-04-12 08:27:21,183 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-04-12 08:27:53] 2025-04-12 08:27:21,214 | INFO     | sufficient remaining disk space (5467275264 B)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,215 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,216 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592: 4182811 B (within 2537553920 B limit)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,216 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592/HITS.44075164._012980.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,216 | INFO     | total size of present files: 0 B (workdir size: 4182811 B)
[2025-04-12 08:27:53] 2025-04-12 08:27:21,216 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592/HITS.44075164._012980.pool.root.1 since it does n
[2025-04-12 08:27:53] 2025-04-12 08:27:21,644 | INFO     | number of running child processes to parent process 14005: 1
[2025-04-12 08:27:53] 2025-04-12 08:27:21,644 | INFO     | maximum number of monitored processes: 6
[2025-04-12 08:27:53] 2025-04-12 08:27:21,917 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-12 08:27:53] 2025-04-12 08:27:22,849 | INFO     | job 6595038592 has state=finished
[2025-04-12 08:27:53] 2025-04-12 08:27:22,849 | INFO     | preparing for final server update for job 6595038592 in state='finished'
[2025-04-12 08:27:53] 2025-04-12 08:27:22,850 | INFO     | this job has now completed (state=finished)
[2025-04-12 08:27:53] 2025-04-12 08:27:22,850 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-12 08:27:53] 2025-04-12 08:27:22,850 | INFO     | log transfer has been attempted: DONE
[2025-04-12 08:27:53] 2025-04-12 08:27:22,850 | INFO     | job 6595038592 has finished - writing final server update
[2025-04-12 08:27:53] 2025-04-12 08:27:22,851 | INFO     | total number of processed events: 400 (read)
[2025-04-12 08:27:53] 2025-04-12 08:27:22,871 | INFO     | executing command: lscpu
[2025-04-12 08:27:53] 2025-04-12 08:27:22,932 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-12 08:27:53] 2025-04-12 08:27:24,151 | INFO     | monitor loop #440: job 0:6595038592 is in state 'finished'
[2025-04-12 08:27:53] 2025-04-12 08:27:24,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-12 08:27:53] 2025-04-12 08:27:24,249 | INFO     | PID=7353 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-12 08:27:53] 2025-04-12 08:27:24,249 | INFO     | .. there are 4 such processes running
[2025-04-12 08:27:53] 2025-04-12 08:27:26,654 | INFO     | monitor loop #441: job 0:6595038592 is in state 'finished'
[2025-04-12 08:27:53] 2025-04-12 08:27:26,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-12 08:27:53] 2025-04-12 08:27:29,164 | INFO     | monitor loop #442: job 0:6595038592 is in state 'finished'
[2025-04-12 08:27:53] 2025-04-12 08:27:29,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,667 | INFO     | monitor loop #443: job 0:6595038592 is in state 'finished'
[2025-04-12 08:27:53] 2025-04-12 08:27:31,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,703 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-12 08:27:53] 2025-04-12 08:27:31,704 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6595038592/memory_monitor_summary.json (trf name=prmon)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,705 | INFO     | extracted standard info from prmon json
[2025-04-12 08:27:53] 2025-04-12 08:27:31,708 | INFO     | extracted standard memory fields from prmon json
[2025-04-12 08:27:53] 2025-04-12 08:27:31,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-12 08:27:53] 2025-04-12 08:27:31,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-12 08:27:53] 2025-04-12 08:27:31,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-12 08:27:53] 2025-04-12 08:27:31,715 | INFO     | fitting pss+swap vs Time
[2025-04-12 08:27:53] 2025-04-12 08:27:31,715 | INFO     | sum of square deviations: 233641590.0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | sum of deviations: 34574434183.0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | mean x: 1744443538.0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | mean y: 2623957.021978022
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | -- intersect: -258141263398.5668
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | intersect: -258141263398.5668
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | chi2: 2.20868582383223
[2025-04-12 08:27:53] 2025-04-12 08:27:31,716 | INFO     | -- intersect: -258141263398.5668
[2025-04-12 08:27:53] 2025-04-12 08:27:31,717 | INFO     | current memory leak: 147.98 B/s (using 91 data points, chi2=2.21)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,717 | INFO     | ..............................
[2025-04-12 08:27:53] 2025-04-12 08:27:31,717 | INFO     | . Timing measurements:
[2025-04-12 08:27:53] 2025-04-12 08:27:31,717 | INFO     | . get job = 0 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,717 | INFO     | . initial setup = 3 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,718 | INFO     | . payload setup = 8 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,718 | INFO     | . stage-in = 0 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,718 | INFO     | . payload execution = 5950 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,721 | INFO     | . stage-out = 1 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,721 | INFO     | . log creation = 0 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,721 | INFO     | ..............................
[2025-04-12 08:27:53] 2025-04-12 08:27:31,947 | INFO     | 
[2025-04-12 08:27:53] 2025-04-12 08:27:31,947 | INFO     | job summary report
[2025-04-12 08:27:53] 2025-04-12 08:27:31,947 | INFO     | --------------------------------------------------
[2025-04-12 08:27:53] 2025-04-12 08:27:31,947 | INFO     | PanDA job id: 6595038592
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | task id: 44075164
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | errors: (none)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | pilot state: finished 
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | transexitcode: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | exeerrorcode: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | exeerrordiag: 
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | exitcode: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | exitmsg: OK
[2025-04-12 08:27:53] 2025-04-12 08:27:31,948 | INFO     | cpuconsumptiontime: 50326 s
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | nevents: 400
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | neventsw: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | pid: 14005
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | pgrp: 14005
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | corecount: 12
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | event service: False
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | sizes: {0: 2417297, 1: 2417297, 4: 2417531, 11: 2417559, 5962: 2444045, 5964: 2453032, 5965: 2453244, 5975: 2453414}
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | --------------------------------------------------
[2025-04-12 08:27:53] 2025-04-12 08:27:31,949 | INFO     | 
[2025-04-12 08:27:53] 2025-04-12 08:27:31,950 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-04-12 08:27:53] 2025-04-12 08:27:31,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,983 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,983 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,983 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,983 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,983 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,984 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | job 6595038592 has completed (purged errors)
[2025-04-12 08:27:53] 2025-04-12 08:27:31,985 | INFO     | overall cleanup function is called
[2025-04-12 08:27:53] 2025-04-12 08:27:32,998 | INFO     | --- collectZombieJob: --- 10, [14005]
[2025-04-12 08:27:53] 2025-04-12 08:27:32,998 | INFO     | zombie collector waiting for pid 14005
[2025-04-12 08:27:53] 2025-04-12 08:27:32,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-12 08:27:53] 2025-04-12 08:27:32,998 | INFO     | collected zombie processes
[2025-04-12 08:27:53] 2025-04-12 08:27:32,999 | INFO     | will attempt to kill all subprocesses of pid=14005
[2025-04-12 08:27:53] 2025-04-12 08:27:33,278 | INFO     | 5995s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-12 08:27:53] 2025-04-12 08:27:33,459 | INFO     | process IDs to be killed: [14005] (in reverse order)
[2025-04-12 08:27:53] 2025-04-12 08:27:33,588 | WARNING  | found no corresponding commands to process id(s)
[2025-04-12 08:27:53] 2025-04-12 08:27:33,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-12 08:27:53] 2025-04-12 08:27:33,604 | INFO     | did not find any defunct processes belonging to 14005
[2025-04-12 08:27:53] 2025-04-12 08:27:33,626 | INFO     | did not find any defunct processes belonging to 14005
[2025-04-12 08:27:53] 2025-04-12 08:27:33,626 | INFO     | ready for new job
[2025-04-12 08:27:53] 2025-04-12 08:27:33,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-12 08:27:53] 2025-04-12 08:27:33,628 | INFO     | **************************************
[2025-04-12 08:27:53] 2025-04-12 08:27:33,628 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-12 08:27:53] 2025-04-12 08:27:33,628 | INFO     | **************************************
[2025-04-12 08:27:53] 2025-04-12 08:27:33,628 | INFO     | 
[2025-04-12 08:27:53] 2025-04-12 08:27:33,631 | INFO     | architecture information:
[2025-04-12 08:27:53] 2025-04-12 08:27:33,631 | INFO     | executing command: cat /etc/os-release
[2025-04-12 08:27:53] 2025-04-12 08:27:33,659 | INFO     | cat /etc/os-release:
[2025-04-12 08:27:53] NAME="CentOS Linux"
[2025-04-12 08:27:53] VERSION="7 (Core)"
[2025-04-12 08:27:53] ID="centos"
[2025-04-12 08:27:53] ID_LIKE="rhel fedora"
[2025-04-12 08:27:53] VERSION_ID="7"
[2025-04-12 08:27:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-12 08:27:53] ANSI_COLOR="0;31"
[2025-04-12 08:27:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-12 08:27:53] HOME_URL="https://www.centos.org/"
[2025-04-12 08:27:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-12 08:27:53] 
[2025-04-12 08:27:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-12 08:27:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-12 08:27:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-12 08:27:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-12 08:27:53] 
[2025-04-12 08:27:53] 2025-04-12 08:27:33,659 | INFO     | **************************************
[2025-04-12 08:27:53] 2025-04-12 08:27:34,165 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-04-12 08:27:53] 2025-04-12 08:27:34,187 | INFO     | sufficient remaining disk space (5469372416 B)
[2025-04-12 08:27:53] 2025-04-12 08:27:34,187 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-12 08:27:53] 2025-04-12 08:27:34,187 | INFO     | current server update state: UPDATING_FINAL
[2025-04-12 08:27:53] 2025-04-12 08:27:34,187 | INFO     | update_server=False
[2025-04-12 08:27:53] 2025-04-12 08:27:34,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-12 08:27:53] 2025-04-12 08:27:34,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-12 08:27:53] 2025-04-12 08:27:34,285 | INFO     | found 0 job(s) in 20 queues
[2025-04-12 08:27:53] 2025-04-12 08:27:34,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-12 08:27:53] 2025-04-12 08:27:34,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-12 08:27:53] 2025-04-12 08:27:34,850 | INFO     | all data control threads have been joined
[2025-04-12 08:27:53] 2025-04-12 08:27:34,965 | INFO     | all job control threads have been joined
[2025-04-12 08:27:53] 2025-04-12 08:27:35,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-12 08:27:53] 2025-04-12 08:27:35,175 | INFO     | aborting loop
[2025-04-12 08:27:53] 2025-04-12 08:27:35,196 | INFO     | [job] retrieve thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,341 | INFO     | [payload] failed_post thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,619 | INFO     | all payload control threads have been joined
[2025-04-12 08:27:53] 2025-04-12 08:27:35,646 | INFO     | [job] validate thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,663 | INFO     | [payload] validate_pre thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,664 | INFO     | [job] create_data_payload thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,855 | INFO     | [data] control thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,960 | INFO     | [payload] validate_post thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:35,970 | INFO     | [job] control thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,135 | INFO     | [payload] execute_payloads thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,180 | INFO     | [job] job monitor thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,196 | INFO     | [data] copytool_out thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,545 | INFO     | [data] copytool_in thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,624 | INFO     | [payload] control thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:36,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-12 08:27:53] 2025-04-12 08:27:37,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-12 08:27:53] 2025-04-12 08:27:37,966 | INFO     | [job] queue monitor thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:41,117 | INFO     | [data] queue_monitor thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:45,171 | INFO     | job.realtimelogging is not enabled
[2025-04-12 08:27:53] 2025-04-12 08:27:46,176 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-12 08:27:53] 2025-04-12 08:27:48,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131971146581824)>', '<ExcThread(monitor, started 131970776434432)>']
[2025-04-12 08:27:53] 2025-04-12 08:27:48,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-12 08:27:53] 2025-04-12 08:27:48,362 | INFO     | [monitor] control thread has ended
[2025-04-12 08:27:53] 2025-04-12 08:27:53,304 | INFO     | all workflow threads have been joined
[2025-04-12 08:27:53] 2025-04-12 08:27:53,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-12 08:27:53] 2025-04-12 08:27:53,304 | INFO     | traces error code: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:53,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-12 08:27:53] 2025-04-12 08:27:53,540 [wrapper] ==== pilot stdout END ====
[2025-04-12 08:27:53] 2025-04-12 08:27:53,546 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-12 08:27:53] 2025-04-12 08:27:53,554 [wrapper] pilotpid: 7353
[2025-04-12 08:27:53] 2025-04-12 08:27:53,565 [wrapper] Pilot exit status: 0
[2025-04-12 08:27:53] 2025-04-12 08:27:53,588 [wrapper] pandaids: 6595038592
[2025-04-12 08:27:53] 2025-04-12 08:27:53,650 [wrapper] cleanup supervisor_pilot   91392 7354
[2025-04-12 08:27:53] 2025-04-12 08:27:53,664 [wrapper] Test setup, not cleaning
[2025-04-12 08:27:53] 2025-04-12 08:27:53,671 [wrapper] apfmon messages muted
[2025-04-12 08:27:53] 2025-04-12 08:27:53,673 [wrapper] ==== wrapper stdout END ====
[2025-04-12 08:27:53] 2025-04-12 08:27:53,677 [wrapper] ==== wrapper stderr END ====
[2025-04-12 08:27:53]  *** Error codes and diagnostics ***
[2025-04-12 08:27:53]     "exeErrorCode": 0,
[2025-04-12 08:27:53]     "exeErrorDiag": "",
[2025-04-12 08:27:53]     "pilotErrorCode": 0,
[2025-04-12 08:27:53]     "pilotErrorDiag": "",
[2025-04-12 08:27:53]  *** Listing of results directory ***
[2025-04-12 08:27:53] total 404816
[2025-04-12 08:27:53] -rw-r--r-- 1 boinc boinc    495897 Apr  9 05:42 pilot3.tar.gz
[2025-04-12 08:27:53] -rw-r--r-- 1 boinc boinc      5111 Apr  9 06:29 queuedata.json
[2025-04-12 08:27:53] -rwx------ 1 boinc boinc     37140 Apr  9 06:29 runpilot2-wrapper.sh
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc       100 Apr 12 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-12 08:27:53] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 06:47 run_atlas
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc       105 Apr 12 06:47 job.xml
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc 221032994 Apr 12 06:47 EVNT.44075162._000520.pool.root.1
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc      9361 Apr 12 06:47 init_data.xml
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc     17569 Apr 12 06:47 start_atlas.sh
[2025-04-12 08:27:53] drwxrwx--x 2 boinc boinc      4096 Apr 12 06:47 shared
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc    508883 Apr 12 06:47 input.tar.gz
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc         0 Apr 12 06:47 boinc_lockfile
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc      2548 Apr 12 06:47 pandaJob.out
[2025-04-12 08:27:53] -rw------- 1 boinc boinc       424 Apr 12 06:47 setup.sh.local
[2025-04-12 08:27:53] -rw------- 1 boinc boinc    986068 Apr 12 06:47 agis_schedconf.cvmfs.json
[2025-04-12 08:27:53] -rw------- 1 boinc boinc   1603529 Apr 12 06:47 agis_ddmendpoints.agis.ALL.json
[2025-04-12 08:27:53] drwx------ 4 boinc boinc      4096 Apr 12 06:47 pilot3
[2025-04-12 08:27:53] -rw------- 1 boinc boinc 187734845 Apr 12 08:26 HITS.44075164._012980.pool.root.1
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc       529 Apr 12 08:26 boinc_task_state.xml
[2025-04-12 08:27:53] -rw------- 1 boinc boinc      1031 Apr 12 08:27 memory_monitor_summary.json
[2025-04-12 08:27:53] -rw------- 1 boinc boinc    365973 Apr 12 08:27 log.44075164._012980.job.log.tgz.1
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc      8192 Apr 12 08:27 boinc_mmap_file
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc        27 Apr 12 08:27 wrapper_checkpoint.txt
[2025-04-12 08:27:53] -rw------- 1 boinc boinc        95 Apr 12 08:27 pilot_heartbeat.json
[2025-04-12 08:27:53] -rw------- 1 boinc boinc      7676 Apr 12 08:27 heartbeat.json
[2025-04-12 08:27:53] -rw------- 1 boinc boinc      4447 Apr 12 08:27 pilotlog.txt
[2025-04-12 08:27:53] -rw------- 1 boinc boinc    591224 Apr 12 08:27 log.44075164._012980.job.log.1
[2025-04-12 08:27:53] -rw------- 1 boinc boinc       357 Apr 12 08:27 output.list
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc       620 Apr 12 08:27 runtime_log
[2025-04-12 08:27:53] -rw------- 1 boinc boinc    972800 Apr 12 08:27 result.tar.gz
[2025-04-12 08:27:53] -rw------- 1 boinc boinc       648 Apr 12 08:27 Xn3KDmm7dM7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUVLLDmsRi3Dn.diag
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc     11393 Apr 12 08:27 runtime_log.err
[2025-04-12 08:27:53] -rw-rw-r-- 1 boinc boinc     22414 Apr 12 08:27 stderr.txt
[2025-04-12 08:27:53] HITS file was successfully produced:
[2025-04-12 08:27:53] -rw------- 1 boinc boinc 187734845 Apr 12 08:26 shared/HITS.pool.root.1
[2025-04-12 08:27:53]  *** Contents of shared directory: ***
[2025-04-12 08:27:53] total 400672
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc 221032994 Apr 12 06:47 ATLAS.root_0
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc     17569 Apr 12 06:47 start_atlas.sh
[2025-04-12 08:27:53] -rw-r--r-- 2 boinc boinc    508883 Apr 12 06:47 input.tar.gz
[2025-04-12 08:27:53] -rw------- 1 boinc boinc 187734845 Apr 12 08:26 HITS.pool.root.1
[2025-04-12 08:27:53] -rw------- 1 boinc boinc    972800 Apr 12 08:27 result.tar.gz
08:27:55 (3003): run_atlas exited; CPU time 50415.017181
08:27:55 (3003): called boinc_finish(0)

</stderr_txt>
]]>

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