Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 07:19:16 (37680): Detected: vboxwrapper 26206
2025-04-12 07:19:16 (37680): Detected: BOINC client v8.0.4
2025-04-12 07:19:17 (37680): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-12 07:19:18 (37680): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 07:19:18 (37680): Create VM. (boinc_6a2bfb5dac90f6de, slot#16)
2025-04-12 07:19:19 (37680): Setting Memory Size for VM. (4096MB)
2025-04-12 07:19:19 (37680): Setting CPU Count for VM. (1)
2025-04-12 07:19:19 (37680): Setting Chipset Options for VM.
2025-04-12 07:19:19 (37680): Setting Graphics Controller Options for VM.
2025-04-12 07:19:20 (37680): Setting Boot Options for VM.
2025-04-12 07:19:20 (37680): Setting Network Configuration for NAT.
2025-04-12 07:19:20 (37680): Enabling VM Network Access.
2025-04-12 07:19:20 (37680): Disabling USB Support for VM.
2025-04-12 07:19:21 (37680): Disabling COM Port Support for VM.
2025-04-12 07:19:21 (37680): Disabling LPT Port Support for VM.
2025-04-12 07:19:21 (37680): Disabling Audio Support for VM.
2025-04-12 07:19:21 (37680): Disabling Clipboard Support for VM.
2025-04-12 07:19:22 (37680): Disabling Drag and Drop Support for VM.
2025-04-12 07:19:22 (37680): Adding storage controller(s) to VM.
2025-04-12 07:19:22 (37680): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 07:19:23 (37680): Adding VirtualBox Guest Additions to VM.
2025-04-12 07:19:23 (37680): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 07:19:23 (37680): forwarding host port 64064 to guest port 80
2025-04-12 07:19:23 (37680): Enabling remote desktop for VM.
2025-04-12 07:19:24 (37680): Required extension pack not installed, remote desktop not enabled.
2025-04-12 07:19:24 (37680): Enabling shared directory for VM.
2025-04-12 07:19:24 (37680): Starting VM using VBoxManage interface. (boinc_6a2bfb5dac90f6de, slot#16)
2025-04-12 07:19:29 (37680): Successfully started VM. (PID = '5304')
2025-04-12 07:19:29 (37680): Reporting VM Process ID to BOINC.
2025-04-12 07:19:29 (37680): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-12 07:19:29 (37680): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 07:19:29 (37680): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 07:19:29 (37680): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 07:19:29 (37680): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 07:19:29 (37680): Detected: Web Application Enabled (http://localhost:64064)
2025-04-12 07:19:29 (37680): Preference change detected
2025-04-12 07:19:29 (37680): Setting CPU throttle for VM. (100%)
2025-04-12 07:19:29 (37680): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 07:19:31 (37680): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 07:19:31 (37680): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 07:19:33 (37680): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 07:19:33 (37680): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 07:19:33 (37680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 07:19:36 (37680): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 07:19:36 (37680): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 07:19:41 (37680): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000105 main     Log opened 2025-04-12T07:19:39.746127000Z
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000196 main     OS Product: Linux
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000213 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000226 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000240 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000240 main     Process ID: 1246
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000241 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 07:19:41 (37680): Guest Log: 00:00:00.000872 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 07:19:41 (37680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 07:19:41 (37680): Guest Log: [INFO] Mounting shared directory
2025-04-12 07:19:41 (37680): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 07:19:44 (37680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 07:19:44 (37680): Guest Log: [INFO] Detected branch: prod
2025-04-12 07:19:44 (37680): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 07:19:44 (37680): Guest Log: Copying input files
2025-04-12 07:19:45 (37680): Guest Log: Copied input files into RunAtlas.
2025-04-12 07:19:45 (37680): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-12 07:19:51 (37680): Guest Log: 00:00:10.010512 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 834 945 000ns (GuestNow=1 744 435 190 921 272 000 ns GuestLast=1 744 442 379 756 217 000 ns fSetTimeLastLoop=true )
2025-04-12 07:19:53 (37680): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 07:19:53 (37680): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 07:19:53 (37680): Guest Log: 2.6.3.0 1515 0 29524 144776 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-12 07:19:53 (37680): Guest Log: copied the webapp to /var/www
2025-04-12 07:19:53 (37680): Guest Log: core_number=1
2025-04-12 07:19:53 (37680): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 07:19:53 (37680): Guest Log:  *** Starting ATLAS job. (PandaID=6586088447 taskID=43634898) ***
2025-04-12 08:59:31 (37680): Status Report: Elapsed Time: '6000.000000'
2025-04-12 08:59:31 (37680): Status Report: CPU Time: '5773.171875'
2025-04-12 10:39:34 (37680): Status Report: Elapsed Time: '12000.000000'
2025-04-12 10:39:34 (37680): Status Report: CPU Time: '11749.265625'
2025-04-12 12:19:36 (37680): Status Report: Elapsed Time: '18000.000000'
2025-04-12 12:19:36 (37680): Status Report: CPU Time: '17723.265625'
2025-04-12 13:59:39 (37680): Status Report: Elapsed Time: '24000.000000'
2025-04-12 13:59:39 (37680): Status Report: CPU Time: '23697.843750'
2025-04-12 15:39:42 (37680): Status Report: Elapsed Time: '30000.000000'
2025-04-12 15:39:42 (37680): Status Report: CPU Time: '29669.781250'
2025-04-12 17:19:44 (37680): Status Report: Elapsed Time: '36000.000000'
2025-04-12 17:19:44 (37680): Status Report: CPU Time: '35643.562500'
2025-04-12 18:59:47 (37680): Status Report: Elapsed Time: '42000.000000'
2025-04-12 18:59:47 (37680): Status Report: CPU Time: '41616.968750'
2025-04-12 20:06:32 (37680): Guest Log:  *** Job finished ***
2025-04-12 20:06:32 (37680): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:05,417 | INFO     | [job] control thread has finished
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:05,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:09,912 | INFO     | [data] queue_monitor thread has finished
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:10,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340175570752)>', '<ExcThread(monitor, started 140339591505664)>']
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:10,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:10,933 | INFO     | [monitor] control thread has ended
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,700 | INFO     | all workflow threads have been joined
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,700 | INFO     | end of generic workflow (traces error code: 0)
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,700 | INFO     | traces error code: 0
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,794 [wrapper] ==== pilot stdout END ====
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,796 [wrapper] ==== wrapper stdout RESUME ====
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,798 [wrapper] pilotpid: 5767
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,800 [wrapper] Pilot exit status: 0
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,811 [wrapper] pandaids: 6586088447
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,825 [wrapper] cleanup supervisor_pilot 31691 5768
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,827 [wrapper] Test setup, not cleaning
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,829 [wrapper] apfmon messages muted
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,831 [wrapper] ==== wrapper stdout END ====
2025-04-12 20:06:32 (37680): Guest Log: 2025-04-12 18:06:15,832 [wrapper] ==== wrapper stderr END ====
2025-04-12 20:06:32 (37680): Guest Log:  *** Error codes and diagnostics ***
2025-04-12 20:06:32 (37680): Guest Log:     "exeErrorCode": 0,
2025-04-12 20:06:32 (37680): Guest Log:     "exeErrorDiag": "",
2025-04-12 20:06:32 (37680): Guest Log:     "pilotErrorCode": 0,
2025-04-12 20:06:32 (37680): Guest Log:     "pilotErrorDiag": "",
2025-04-12 20:06:32 (37680): Guest Log:  *** Listing of results directory ***
2025-04-12 20:06:32 (37680): Guest Log: total 327768
2025-04-12 20:06:32 (37680): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 17:26 pilot3.tar.gz
2025-04-12 20:06:32 (37680): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 17:30 queuedata.json
2025-04-12 20:06:32 (37680): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 17:32 runpilot2-wrapper.sh
2025-04-12 20:06:32 (37680): Guest Log: -rwxr-xr-x. 1 atlas atlas      9321 Apr 12 05:19 init_data.xml
2025-04-12 20:06:32 (37680): Guest Log: -rwxr-xr-x. 1 atlas atlas    508892 Apr 12 05:19 input.tar.gz
2025-04-12 20:06:32 (37680): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 12 05:19 start_atlas.sh
2025-04-12 20:06:32 (37680): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 05:19 EVNT.43634896._000743.pool.root.1 -> /data/./ATLAS.root_0
2025-04-12 20:06:32 (37680): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr 12 05:19 pandaJob.out
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas       460 Apr 12 05:19 setup.sh.local
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas    986068 Apr 12 05:20 agis_schedconf.cvmfs.json
2025-04-12 20:06:32 (37680): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 05:20 pilot3
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas 322630423 Apr 12 18:05 HITS.43634898._016233.pool.root.1
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas        95 Apr 12 18:05 pilot_heartbeat.json
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas      1021 Apr 12 18:05 memory_monitor_summary.json
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 12 18:05 agis_ddmendpoints.agis.ALL.json
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas    574128 Apr 12 18:05 log.43634898._016233.job.log.tgz.1
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas      7669 Apr 12 18:06 heartbeat.json
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 12 18:06 pilotlog.txt
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas   4039279 Apr 12 18:06 log.43634898._016233.job.log.1
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas       357 Apr 12 18:06 output.list
2025-04-12 20:06:32 (37680): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 12 18:06 runtime_log
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas   4628480 Apr 12 18:06 result.tar.gz
2025-04-12 20:06:32 (37680): Guest Log: -rw-r--r--. 1 atlas atlas     11174 Apr 12 18:06 runtime_log.err
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas       658 Apr 12 18:06 pBzKDm2bdK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm9iHLDmkgHkGm.diag
2025-04-12 20:06:32 (37680): Guest Log: Looking for outputfile HITS.43634898._016233.pool.root.1
2025-04-12 20:06:32 (37680): Guest Log: HITS file was successfully produced
2025-04-12 20:06:32 (37680): Guest Log: -rw-------. 1 atlas atlas 322630423 Apr 12 18:05 /home/atlas/RunAtlas/HITS.43634898._016233.pool.root.1
2025-04-12 20:06:33 (37680): Guest Log: Successfully finished the ATLAS job!
2025-04-12 20:06:33 (37680): Guest Log: Copying the results back to the shared directory!
2025-04-12 20:06:33 (37680): Guest Log:  *** Contents of shared directory: ***
2025-04-12 20:06:33 (37680): Guest Log: total 669828
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root 358093428 Apr 12 05:19 ATLAS.root_0
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root 322630423 Apr 12  2025 HITS.pool.root.1
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root      9321 Apr 12 05:19 init_data.xml
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root    508892 Apr 12 05:18 input.tar.gz
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root   4628480 Apr 12  2025 result.tar.gz
2025-04-12 20:06:33 (37680): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 12 05:18 start_atlas.sh
2025-04-12 20:06:33 (37680): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-12 20:06:33 (37680): VM Completion File Detected.
2025-04-12 20:06:33 (37680): Powering off VM.
2025-04-12 20:06:34 (37680): Successfully stopped VM.
2025-04-12 20:06:34 (37680): Deregistering VM. (boinc_6a2bfb5dac90f6de, slot#16)
2025-04-12 20:06:34 (37680): Removing network bandwidth throttle group from VM.
2025-04-12 20:06:34 (37680): Removing VM from VirtualBox.
20:06:40 (37680): called boinc_finish(0)

</stderr_txt>
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