Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 17:24:27 (16040): Detected: vboxwrapper 26206
2025-04-12 17:24:27 (16040): Detected: BOINC client v7.16.20
2025-04-12 17:24:27 (16040): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-12 17:24:27 (16040): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 17:24:28 (16040): Create VM. (boinc_f6551f539026ac65, slot#2)
2025-04-12 17:24:29 (16040): Setting Memory Size for VM. (4800MB)
2025-04-12 17:24:29 (16040): Setting CPU Count for VM. (8)
2025-04-12 17:24:29 (16040): Setting Chipset Options for VM.
2025-04-12 17:24:29 (16040): Setting Graphics Controller Options for VM.
2025-04-12 17:24:30 (16040): Setting Boot Options for VM.
2025-04-12 17:24:30 (16040): Setting Network Configuration for NAT.
2025-04-12 17:24:30 (16040): Enabling VM Network Access.
2025-04-12 17:24:31 (16040): Disabling USB Support for VM.
2025-04-12 17:24:31 (16040): Disabling COM Port Support for VM.
2025-04-12 17:24:31 (16040): Disabling LPT Port Support for VM.
2025-04-12 17:24:31 (16040): Disabling Audio Support for VM.
2025-04-12 17:24:32 (16040): Disabling Clipboard Support for VM.
2025-04-12 17:24:32 (16040): Disabling Drag and Drop Support for VM.
2025-04-12 17:24:33 (16040): Adding storage controller(s) to VM.
2025-04-12 17:24:33 (16040): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 17:24:34 (16040): Adding VirtualBox Guest Additions to VM.
2025-04-12 17:24:34 (16040): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 17:24:35 (16040): forwarding host port 63789 to guest port 80
2025-04-12 17:24:35 (16040): Enabling remote desktop for VM.
2025-04-12 17:24:35 (16040): Required extension pack not installed, remote desktop not enabled.
2025-04-12 17:24:35 (16040): Enabling shared directory for VM.
2025-04-12 17:24:36 (16040): Starting VM using VBoxManage interface. (boinc_f6551f539026ac65, slot#2)
2025-04-12 17:24:39 (16040): Successfully started VM. (PID = '16868')
2025-04-12 17:24:39 (16040): Reporting VM Process ID to BOINC.
2025-04-12 17:24:39 (16040): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-12 17:24:39 (16040): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 17:24:39 (16040): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 17:24:39 (16040): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 17:24:39 (16040): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 17:24:39 (16040): Detected: Web Application Enabled (http://localhost:63789)
2025-04-12 17:24:39 (16040): Preference change detected
2025-04-12 17:24:39 (16040): Setting CPU throttle for VM. (100%)
2025-04-12 17:24:40 (16040): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 17:24:41 (16040): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 17:24:41 (16040): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 17:24:44 (16040): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 17:24:44 (16040): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 17:24:44 (16040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 17:24:48 (16040): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 17:24:48 (16040): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 17:24:53 (16040): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000144 main     Log opened 2025-04-12T17:24:50.787378000Z
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000227 main     OS Product: Linux
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000247 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000262 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000278 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000278 main     Process ID: 1366
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000278 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 17:24:53 (16040): Guest Log: 00:00:00.000787 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 17:24:53 (16040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 17:24:53 (16040): Guest Log: [INFO] Mounting shared directory
2025-04-12 17:24:53 (16040): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 17:24:54 (16040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 17:24:54 (16040): Guest Log: [INFO] Detected branch: prod
2025-04-12 17:24:55 (16040): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 17:24:55 (16040): Guest Log: Copying input files
2025-04-12 17:24:56 (16040): Guest Log: Copied input files into RunAtlas.
2025-04-12 17:24:56 (16040): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-12 17:24:56 (16040): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-12 17:24:56 (16040): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-12 17:24:56 (16040): Guest Log: Further information can be found at the LHC@home message board.
2025-04-12 17:25:03 (16040): Guest Log: 00:00:10.025327 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 797 282 000ns (GuestNow=1 744 471 502 991 611 000 ns GuestLast=1 744 478 690 788 893 000 ns fSetTimeLastLoop=true )
2025-04-12 17:25:04 (16040): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 17:25:04 (16040): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 17:25:04 (16040): Guest Log: 2.6.3.0 1643 0 30172 144776 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-12 17:25:05 (16040): Guest Log: copied the webapp to /var/www
2025-04-12 17:25:05 (16040): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-12 17:25:05 (16040): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-12 17:25:05 (16040): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 17:25:05 (16040): Guest Log:  *** Starting ATLAS job. (PandaID=6586322419 taskID=43634898) ***
2025-04-12 19:04:45 (16040): Status Report: Elapsed Time: '6000.000000'
2025-04-12 19:04:45 (16040): Status Report: CPU Time: '40855.265625'
2025-04-12 19:21:21 (16040): Guest Log:  *** Job finished ***
2025-04-12 19:21:21 (16040): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:07,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:08,558 | INFO     | [job] queue monitor thread has finished
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:11,343 | INFO     | [data] queue_monitor thread has finished
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:13,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101533071168)>', '<ExcThread(monitor, started 140100784596736)>']
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:13,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:13,640 | INFO     | [monitor] control thread has ended
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,269 | INFO     | all workflow threads have been joined
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,269 | INFO     | end of generic workflow (traces error code: 0)
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,269 | INFO     | traces error code: 0
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,335 [wrapper] ==== pilot stdout END ====
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,340 [wrapper] ==== wrapper stdout RESUME ====
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,344 [wrapper] pilotpid: 6007
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,349 [wrapper] Pilot exit status: 0
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,418 [wrapper] pandaids: 6586322419
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,451 [wrapper] cleanup supervisor_pilot  3500 6008
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,456 [wrapper] Test setup, not cleaning
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,462 [wrapper] apfmon messages muted
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,467 [wrapper] ==== wrapper stdout END ====
2025-04-12 19:21:21 (16040): Guest Log: 2025-04-12 17:21:18,472 [wrapper] ==== wrapper stderr END ====
2025-04-12 19:21:21 (16040): Guest Log:  *** Error codes and diagnostics ***
2025-04-12 19:21:21 (16040): Guest Log:     "exeErrorCode": 0,
2025-04-12 19:21:21 (16040): Guest Log:     "exeErrorDiag": "",
2025-04-12 19:21:21 (16040): Guest Log:     "pilotErrorCode": 0,
2025-04-12 19:21:21 (16040): Guest Log:     "pilotErrorDiag": "",
2025-04-12 19:21:21 (16040): Guest Log:  *** Listing of results directory ***
2025-04-12 19:21:21 (16040): Guest Log: total 313400
2025-04-12 19:21:21 (16040): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 19:53 pilot3.tar.gz
2025-04-12 19:21:21 (16040): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 19:55 runpilot2-wrapper.sh
2025-04-12 19:21:21 (16040): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 19:55 queuedata.json
2025-04-12 19:21:21 (16040): Guest Log: -rwxr-xr-x. 1 atlas atlas    508890 Apr 12 15:24 input.tar.gz
2025-04-12 19:21:21 (16040): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Apr 12 15:24 init_data.xml
2025-04-12 19:21:21 (16040): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 12 15:24 start_atlas.sh
2025-04-12 19:21:21 (16040): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 15:24 EVNT.43634896._000660.pool.root.1 -> /data/./ATLAS.root_0
2025-04-12 19:21:21 (16040): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr 12 15:25 pandaJob.out
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas       424 Apr 12 15:25 setup.sh.local
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas    986068 Apr 12 15:25 agis_schedconf.cvmfs.json
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 12 15:25 agis_ddmendpoints.agis.ALL.json
2025-04-12 19:21:21 (16040): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 15:25 pilot3
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas 315261685 Apr 12 17:20 HITS.43634898._017249.pool.root.1
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas        95 Apr 12 17:20 pilot_heartbeat.json
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 12 17:20 memory_monitor_summary.json
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas    329697 Apr 12 17:20 log.43634898._017249.job.log.tgz.1
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas      7708 Apr 12 17:21 heartbeat.json
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 12 17:21 pilotlog.txt
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas    612071 Apr 12 17:21 log.43634898._017249.job.log.1
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas       357 Apr 12 17:21 output.list
2025-04-12 19:21:21 (16040): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 12 17:21 runtime_log
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas    962560 Apr 12 17:21 result.tar.gz
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas       652 Apr 12 17:21 VC6NDmupfK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmpGtKDmAy5eZm.diag
2025-04-12 19:21:21 (16040): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 12 17:21 runtime_log.err
2025-04-12 19:21:21 (16040): Guest Log: Looking for outputfile HITS.43634898._017249.pool.root.1
2025-04-12 19:21:21 (16040): Guest Log: HITS file was successfully produced
2025-04-12 19:21:21 (16040): Guest Log: -rw-------. 1 atlas atlas 315261685 Apr 12 17:20 /home/atlas/RunAtlas/HITS.43634898._017249.pool.root.1
2025-04-12 19:21:23 (16040): Guest Log: Successfully finished the ATLAS job!
2025-04-12 19:21:23 (16040): Guest Log: Copying the results back to the shared directory!
2025-04-12 19:21:23 (16040): Guest Log:  *** Contents of shared directory: ***
2025-04-12 19:21:23 (16040): Guest Log: total 659716
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root 358776725 Apr 12 15:24 ATLAS.root_0
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root 315261685 Apr 12  2025 HITS.pool.root.1
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root      8774 Apr 12 15:24 init_data.xml
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root    508890 Apr 12 03:02 input.tar.gz
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root    962560 Apr 12  2025 result.tar.gz
2025-04-12 19:21:23 (16040): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 12 03:02 start_atlas.sh
2025-04-12 19:21:23 (16040): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-12 19:21:23 (16040): VM Completion File Detected.
2025-04-12 19:21:23 (16040): Powering off VM.
2025-04-12 19:21:24 (16040): Successfully stopped VM.
2025-04-12 19:21:24 (16040): Deregistering VM. (boinc_f6551f539026ac65, slot#2)
2025-04-12 19:21:24 (16040): Removing network bandwidth throttle group from VM.
2025-04-12 19:21:25 (16040): Removing VM from VirtualBox.
19:21:30 (16040): called boinc_finish(0)

</stderr_txt>
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