Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 04:12:07 (11716): Detected: vboxwrapper 26206
2025-04-12 04:12:07 (11716): Detected: BOINC client v8.0.4
2025-04-12 04:12:07 (11716): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-12 04:12:08 (11716): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 04:12:08 (11716): Create VM. (boinc_c68b46e76417c82b, slot#0)
2025-04-12 04:12:09 (11716): Setting Memory Size for VM. (4096MB)
2025-04-12 04:12:09 (11716): Setting CPU Count for VM. (1)
2025-04-12 04:12:09 (11716): Setting Chipset Options for VM.
2025-04-12 04:12:10 (11716): Setting Graphics Controller Options for VM.
2025-04-12 04:12:10 (11716): Setting Boot Options for VM.
2025-04-12 04:12:10 (11716): Setting Network Configuration for NAT.
2025-04-12 04:12:10 (11716): Enabling VM Network Access.
2025-04-12 04:12:11 (11716): Disabling USB Support for VM.
2025-04-12 04:12:11 (11716): Disabling COM Port Support for VM.
2025-04-12 04:12:11 (11716): Disabling LPT Port Support for VM.
2025-04-12 04:12:11 (11716): Disabling Audio Support for VM.
2025-04-12 04:12:12 (11716): Disabling Clipboard Support for VM.
2025-04-12 04:12:12 (11716): Disabling Drag and Drop Support for VM.
2025-04-12 04:12:12 (11716): Adding storage controller(s) to VM.
2025-04-12 04:12:12 (11716): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 04:12:13 (11716): Adding VirtualBox Guest Additions to VM.
2025-04-12 04:12:13 (11716): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 04:12:13 (11716): forwarding host port 60141 to guest port 80
2025-04-12 04:12:14 (11716): Enabling remote desktop for VM.
2025-04-12 04:12:14 (11716): Required extension pack not installed, remote desktop not enabled.
2025-04-12 04:12:14 (11716): Enabling shared directory for VM.
2025-04-12 04:12:14 (11716): Starting VM using VBoxManage interface. (boinc_c68b46e76417c82b, slot#0)
2025-04-12 04:12:20 (11716): Successfully started VM. (PID = '15036')
2025-04-12 04:12:20 (11716): Reporting VM Process ID to BOINC.
2025-04-12 04:12:20 (11716): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-12 04:12:20 (11716): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 04:12:20 (11716): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 04:12:20 (11716): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 04:12:20 (11716): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 04:12:20 (11716): Detected: Web Application Enabled (http://localhost:60141)
2025-04-12 04:12:20 (11716): Preference change detected
2025-04-12 04:12:20 (11716): Setting CPU throttle for VM. (100%)
2025-04-12 04:12:21 (11716): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 04:12:22 (11716): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 04:12:22 (11716): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 04:12:25 (11716): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 04:12:25 (11716): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 04:12:25 (11716): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 04:12:32 (11716): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 04:12:32 (11716): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 04:12:48 (11716): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000366 main     Log opened 2025-04-12T04:12:46.697931000Z
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000575 main     OS Product: Linux
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000632 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000681 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000752 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000753 main     Process ID: 1254
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.000754 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 04:12:48 (11716): Guest Log: 00:00:00.004514 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 04:12:48 (11716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 04:12:48 (11716): Guest Log: [INFO] Mounting shared directory
2025-04-12 04:12:48 (11716): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 04:12:51 (11716): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 04:12:51 (11716): Guest Log: [INFO] Detected branch: prod
2025-04-12 04:12:51 (11716): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 04:12:51 (11716): Guest Log: Copying input files
2025-04-12 04:12:54 (11716): Guest Log: Copied input files into RunAtlas.
2025-04-12 04:12:54 (11716): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-12 04:12:58 (11716): Guest Log: 00:00:10.035422 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 362 812 000ns (GuestNow=1 744 423 978 370 078 000 ns GuestLast=1 744 431 166 732 890 000 ns fSetTimeLastLoop=true )
2025-04-12 04:13:01 (11716): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 04:13:01 (11716): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 04:13:01 (11716): Guest Log: 2.6.3.0 1523 0 31548 144776 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-12 04:13:03 (11716): Guest Log: copied the webapp to /var/www
2025-04-12 04:13:03 (11716): Guest Log: core_number=1
2025-04-12 04:13:03 (11716): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 04:13:03 (11716): Guest Log:  *** Starting ATLAS job. (PandaID=6581219805 taskID=43634882) ***
2025-04-12 05:52:26 (11716): Status Report: Elapsed Time: '6000.000000'
2025-04-12 05:52:26 (11716): Status Report: CPU Time: '5061.906250'
2025-04-12 07:32:31 (11716): Status Report: Elapsed Time: '12000.000000'
2025-04-12 07:32:31 (11716): Status Report: CPU Time: '11048.296875'
2025-04-12 09:12:37 (11716): Status Report: Elapsed Time: '18000.000000'
2025-04-12 09:12:37 (11716): Status Report: CPU Time: '17032.640625'
2025-04-12 10:52:42 (11716): Status Report: Elapsed Time: '24000.000000'
2025-04-12 10:52:42 (11716): Status Report: CPU Time: '23016.359375'
2025-04-12 12:32:48 (11716): Status Report: Elapsed Time: '30000.000000'
2025-04-12 12:32:48 (11716): Status Report: CPU Time: '28999.734375'
2025-04-12 14:12:53 (11716): Status Report: Elapsed Time: '36000.000000'
2025-04-12 14:12:53 (11716): Status Report: CPU Time: '34984.359375'
2025-04-12 15:52:58 (11716): Status Report: Elapsed Time: '42000.000000'
2025-04-12 15:52:58 (11716): Status Report: CPU Time: '40968.390625'
2025-04-12 17:33:04 (11716): Status Report: Elapsed Time: '48000.000000'
2025-04-12 17:33:04 (11716): Status Report: CPU Time: '46951.750000'
2025-04-12 19:13:09 (11716): Status Report: Elapsed Time: '54000.000000'
2025-04-12 19:13:09 (11716): Status Report: CPU Time: '52934.890625'
2025-04-12 20:53:15 (11716): Status Report: Elapsed Time: '60000.000000'
2025-04-12 20:53:15 (11716): Status Report: CPU Time: '58920.031250'
2025-04-12 22:33:20 (11716): Status Report: Elapsed Time: '66000.000000'
2025-04-12 22:33:20 (11716): Status Report: CPU Time: '64903.750000'
2025-04-13 00:13:26 (11716): Status Report: Elapsed Time: '72000.000000'
2025-04-13 00:13:26 (11716): Status Report: CPU Time: '70887.546875'
2025-04-13 01:53:31 (11716): Status Report: Elapsed Time: '78000.000000'
2025-04-13 01:53:31 (11716): Status Report: CPU Time: '76871.375000'
2025-04-13 03:33:37 (11716): Status Report: Elapsed Time: '84000.000000'
2025-04-13 03:33:37 (11716): Status Report: CPU Time: '82854.546875'
2025-04-13 03:38:46 (11716): Guest Log:  *** Job finished ***
2025-04-13 03:38:46 (11716): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:32,304 | INFO     | [data] queue_monitor thread has finished
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:37,693 | INFO     | job.realtimelogging is not enabled
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:38,695 | INFO     | [payload] run_realtimelog thread has finished
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:40,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639080167232)>', '<ExcThread(monitor, started 139638496810752)>']
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:41,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:41,161 | INFO     | [monitor] control thread has ended
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,330 | INFO     | all workflow threads have been joined
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,330 | INFO     | end of generic workflow (traces error code: 0)
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,330 | INFO     | traces error code: 0
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,429 [wrapper] ==== pilot stdout END ====
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,433 [wrapper] ==== wrapper stdout RESUME ====
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,437 [wrapper] pilotpid: 5793
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,441 [wrapper] Pilot exit status: 0
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,472 [wrapper] pandaids: 6581219805
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,503 [wrapper] cleanup supervisor_pilot  5090 5794
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,509 [wrapper] Test setup, not cleaning
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,514 [wrapper] apfmon messages muted
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,521 [wrapper] ==== wrapper stdout END ====
2025-04-13 03:38:46 (11716): Guest Log: 2025-04-13 01:38:45,527 [wrapper] ==== wrapper stderr END ====
2025-04-13 03:38:46 (11716): Guest Log:  *** Error codes and diagnostics ***
2025-04-13 03:38:46 (11716): Guest Log:     "exeErrorCode": 0,
2025-04-13 03:38:46 (11716): Guest Log:     "exeErrorDiag": "",
2025-04-13 03:38:46 (11716): Guest Log:     "pilotErrorCode": 0,
2025-04-13 03:38:46 (11716): Guest Log:     "pilotErrorDiag": "",
2025-04-13 03:38:46 (11716): Guest Log:  *** Listing of results directory ***
2025-04-13 03:38:46 (11716): Guest Log: total 321512
2025-04-13 03:38:46 (11716): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 31 11:45 pilot3.tar.gz
2025-04-13 03:38:46 (11716): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 31 11:53 runpilot2-wrapper.sh
2025-04-13 03:38:46 (11716): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 31 11:53 queuedata.json
2025-04-13 03:38:46 (11716): Guest Log: -rwxr-xr-x. 1 atlas atlas      9361 Apr 12 02:12 init_data.xml
2025-04-13 03:38:46 (11716): Guest Log: -rwxr-xr-x. 1 atlas atlas    507261 Apr 12 02:12 input.tar.gz
2025-04-13 03:38:46 (11716): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr 12 02:12 start_atlas.sh
2025-04-13 03:38:46 (11716): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 12 02:12 EVNT.43634880._000628.pool.root.1 -> /data/./ATLAS.root_0
2025-04-13 03:38:46 (11716): Guest Log: -rw-r--r--. 1 atlas atlas      2618 Apr 12 02:13 pandaJob.out
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas       460 Apr 12 02:13 setup.sh.local
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas    986068 Apr 12 02:13 agis_schedconf.cvmfs.json
2025-04-13 03:38:46 (11716): Guest Log: drwx------. 4 atlas atlas      4096 Apr 12 02:13 pilot3
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas 294258426 Apr 13 01:37 HITS.43634882._003768.pool.root.1
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas        95 Apr 13 01:38 pilot_heartbeat.json
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas      1022 Apr 13 01:38 memory_monitor_summary.json
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 13 01:38 agis_ddmendpoints.agis.ALL.json
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas   1389126 Apr 13 01:38 log.43634882._003768.job.log.tgz.1
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas      7671 Apr 13 01:38 heartbeat.json
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas      4474 Apr 13 01:38 pilotlog.txt
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas  14210486 Apr 13 01:38 log.43634882._003768.job.log.1
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas       357 Apr 13 01:38 output.list
2025-04-13 03:38:46 (11716): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 13 01:38 runtime_log
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas  15616000 Apr 13 01:38 result.tar.gz
2025-04-13 03:38:46 (11716): Guest Log: -rw-r--r--. 1 atlas atlas     11169 Apr 13 01:38 runtime_log.err
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas       658 Apr 13 01:38 nWMODmYsSJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDMBLDmUiphan.diag
2025-04-13 03:38:46 (11716): Guest Log: Looking for outputfile HITS.43634882._003768.pool.root.1
2025-04-13 03:38:46 (11716): Guest Log: HITS file was successfully produced
2025-04-13 03:38:46 (11716): Guest Log: -rw-------. 1 atlas atlas 294258426 Apr 13 01:37 /home/atlas/RunAtlas/HITS.43634882._003768.pool.root.1
2025-04-13 03:38:48 (11716): Guest Log: Successfully finished the ATLAS job!
2025-04-13 03:38:48 (11716): Guest Log: Copying the results back to the shared directory!
2025-04-13 03:38:49 (11716): Guest Log:  *** Contents of shared directory: ***
2025-04-13 03:38:49 (11716): Guest Log: total 640096
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root 345038316 Apr 12 02:12 ATLAS.root_0
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root 294258426 Apr 13 01:38 HITS.pool.root.1
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root      9361 Apr 12 02:12 init_data.xml
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root    507261 Apr 12 02:09 input.tar.gz
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root  15616000 Apr 13 01:38 result.tar.gz
2025-04-13 03:38:49 (11716): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr 12 02:09 start_atlas.sh
2025-04-13 03:38:49 (11716): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-13 03:38:49 (11716): VM Completion File Detected.
2025-04-13 03:38:49 (11716): Powering off VM.
2025-04-13 03:38:50 (11716): Successfully stopped VM.
2025-04-13 03:38:50 (11716): Deregistering VM. (boinc_c68b46e76417c82b, slot#0)
2025-04-13 03:38:50 (11716): Removing network bandwidth throttle group from VM.
2025-04-13 03:38:50 (11716): Removing VM from VirtualBox.
03:38:56 (11716): called boinc_finish(0)

</stderr_txt>
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