Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-15 20:50:57 (46560): Detected: vboxwrapper 26206
2025-04-15 20:50:57 (46560): Detected: BOINC client v7.24.1
2025-04-15 20:50:57 (46560): Detected: VirtualBox VboxManage Interface (Version: 6.1.30)
2025-04-15 20:50:57 (46560): Detected: Sandbox Configuration Enabled
2025-04-15 20:50:57 (46560): Successfully copied 'init_data.xml' to the shared directory.
2025-04-15 20:50:57 (46560): Create VM. (boinc_b5be88cae4f3bb4c, slot#2)
2025-04-15 20:50:57 (46560): Setting Memory Size for VM. (4400MB)
2025-04-15 20:50:57 (46560): Setting CPU Count for VM. (4)
2025-04-15 20:50:58 (46560): Setting Chipset Options for VM.
2025-04-15 20:50:58 (46560): Setting Graphics Controller Options for VM.
2025-04-15 20:50:58 (46560): Setting Boot Options for VM.
2025-04-15 20:50:58 (46560): Setting Network Configuration for NAT.
2025-04-15 20:50:58 (46560): Enabling VM Network Access.
2025-04-15 20:50:58 (46560): Disabling USB Support for VM.
2025-04-15 20:50:58 (46560): Disabling COM Port Support for VM.
2025-04-15 20:50:58 (46560): Disabling Audio Support for VM.
2025-04-15 20:50:58 (46560): Disabling Clipboard Support for VM.
2025-04-15 20:50:58 (46560): Disabling Drag and Drop Support for VM.
2025-04-15 20:50:58 (46560): Adding storage controller(s) to VM.
2025-04-15 20:50:58 (46560): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-15 20:50:59 (46560): Adding VirtualBox Guest Additions to VM.
2025-04-15 20:50:59 (46560): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-15 20:50:59 (46560): forwarding host port 58710 to guest port 80
2025-04-15 20:50:59 (46560): Enabling remote desktop for VM.
2025-04-15 20:50:59 (46560): Required extension pack not installed, remote desktop not enabled.
2025-04-15 20:50:59 (46560): Enabling shared directory for VM.
2025-04-15 20:50:59 (46560): Starting VM using VBoxManage interface. (boinc_b5be88cae4f3bb4c, slot#2)
2025-04-15 20:51:00 (46560): Successfully started VM. (PID = '46627')
2025-04-15 20:51:00 (46560): Reporting VM Process ID to BOINC.
2025-04-15 20:51:01 (46560): Guest Log: BIOS: VirtualBox 6.1.30
2025-04-15 20:51:01 (46560): Guest Log: CPUID EDX: 0x178bfbff
2025-04-15 20:51:01 (46560): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-15 20:51:01 (46560): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-15 20:51:01 (46560): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-15 20:51:01 (46560): Detected: Web Application Enabled (http://localhost:58710)
2025-04-15 20:51:01 (46560): Preference change detected
2025-04-15 20:51:01 (46560): Setting CPU throttle for VM. (40%)
2025-04-15 20:51:01 (46560): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-15 20:51:02 (46560): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-15 20:51:02 (46560): Guest Log: BIOS: Booting from Hard Disk...
2025-04-15 20:51:04 (46560): VM state change detected. (old = 'running', new = 'paused')
2025-04-15 20:51:05 (46560): VM state change detected. (old = 'paused', new = 'running')
2025-04-15 20:51:08 (46560): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-15 20:51:08 (46560): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-15 20:51:08 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-15 20:51:09 (46560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-15 20:51:22 (46560): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-15 20:51:22 (46560): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-15 20:51:38 (46560): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.000225 main     Log opened 2025-04-16T03:51:35.651761000Z
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.000808 main     OS Product: Linux
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.001019 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.001107 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.001236 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.001237 main     Process ID: 1300
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.001238 main     Package type: LINUX_64BITS_GENERIC
2025-04-15 20:51:38 (46560): Guest Log: 00:00:00.003168 main     5.2.32 r132073 started. Verbose level = 0
2025-04-15 20:51:38 (46560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-15 20:51:38 (46560): Guest Log: [INFO] Mounting shared directory
2025-04-15 20:51:38 (46560): Guest Log: [INFO] Checking for init_data.xml
2025-04-15 20:51:45 (46560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-15 20:51:45 (46560): Guest Log: [INFO] Detected branch: prod
2025-04-15 20:51:48 (46560): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-15 20:51:48 (46560): Guest Log: Copying input files
2025-04-15 20:51:53 (46560): Guest Log: Copied input files into RunAtlas.
2025-04-15 20:51:53 (46560): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-15 20:51:53 (46560): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-15 20:51:53 (46560): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-15 20:51:53 (46560): Guest Log: Further information can be found at the LHC@home message board.
2025-04-15 20:52:04 (46560): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-15 20:52:04 (46560): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-15 20:52:04 (46560): Guest Log: 2.6.3.0 1577 0 32200 144913 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-15 20:52:06 (46560): Guest Log: copied the webapp to /var/www
2025-04-15 20:52:06 (46560): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-15 20:52:06 (46560): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-15 20:52:06 (46560): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-15 20:52:06 (46560): Guest Log:  *** Starting ATLAS job. (PandaID=6600382891 taskID=44075164) ***
2025-04-15 22:30:24 (46560): Status Report: Elapsed Time: '6000.000000'
2025-04-15 22:30:24 (46560): Status Report: CPU Time: '7305.070000'
2025-04-15 23:00:03 (46560): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 02:00:02 (46560): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 02:00:05 (46560): Guest Log: 02:08:29.793692 timesync vgsvcTimeSyncWorker: Radical host time change: 10 809 266 000 000ns (HostNow=1 744 794 004 734 000 000 ns HostLast=1 744 783 195 468 000 000 ns)
2025-04-16 02:00:15 (46560): Guest Log: 02:08:39.814774 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 809 333 225 000ns (GuestNow=1 744 794 014 766 612 000 ns GuestLast=1 744 783 205 433 387 000 ns fSetTimeLastLoop=true )
2025-04-16 03:09:46 (46560): Status Report: Elapsed Time: '12000.000000'
2025-04-16 03:09:46 (46560): Status Report: CPU Time: '16610.500000'
2025-04-16 04:49:08 (46560): Status Report: Elapsed Time: '18000.000000'
2025-04-16 04:49:08 (46560): Status Report: CPU Time: '25920.580000'
2025-04-16 06:28:30 (46560): Status Report: Elapsed Time: '24000.000000'
2025-04-16 06:28:30 (46560): Status Report: CPU Time: '35226.290000'
2025-04-16 07:24:41 (46560): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 07:25:01 (46560): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 08:08:12 (46560): Status Report: Elapsed Time: '30000.000000'
2025-04-16 08:08:12 (46560): Status Report: CPU Time: '44495.510000'
2025-04-16 09:47:35 (46560): Status Report: Elapsed Time: '36000.000000'
2025-04-16 09:47:35 (46560): Status Report: CPU Time: '53744.340000'
2025-04-16 11:26:57 (46560): Status Report: Elapsed Time: '42000.000000'
2025-04-16 11:26:57 (46560): Status Report: CPU Time: '62966.540000'
2025-04-16 13:03:40 (46560): Guest Log:  *** Job finished ***
2025-04-16 13:03:40 (46560): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:15,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:16,981 | INFO     | [job] queue monitor thread has finished
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:19,482 | INFO     | [data] queue_monitor thread has finished
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:20,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630964389696)>', '<ExcThread(monitor, started 140629778626304)>']
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:21,486 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:21,486 | INFO     | [monitor] control thread has ended
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:25,892 | INFO     | all workflow threads have been joined
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:25,892 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:25,892 | INFO     | traces error code: 0
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:25,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,118 [wrapper] ==== pilot stdout END ====
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,151 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,162 [wrapper] pilotpid: 5919
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,174 [wrapper] Pilot exit status: 0
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,283 [wrapper] pandaids: 6600382891
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,386 [wrapper] cleanup supervisor_pilot 17081 5920
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,402 [wrapper] Test setup, not cleaning
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,418 [wrapper] apfmon messages muted
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,431 [wrapper] ==== wrapper stdout END ====
2025-04-16 13:03:40 (46560): Guest Log: 2025-04-16 20:03:26,478 [wrapper] ==== wrapper stderr END ====
2025-04-16 13:03:40 (46560): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 13:03:40 (46560): Guest Log:     "exeErrorCode": 0,
2025-04-16 13:03:40 (46560): Guest Log:     "exeErrorDiag": "",
2025-04-16 13:03:40 (46560): Guest Log:     "pilotErrorCode": 0,
2025-04-16 13:03:40 (46560): Guest Log:     "pilotErrorDiag": "",
2025-04-16 13:03:40 (46560): Guest Log:  *** Listing of results directory ***
2025-04-16 13:03:40 (46560): Guest Log: total 199432
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 11 22:01 pilot3.tar.gz
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 11 22:22 queuedata.json
2025-04-16 13:03:40 (46560): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 11 22:23 runpilot2-wrapper.sh
2025-04-16 13:03:40 (46560): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 16 03:51 start_atlas.sh
2025-04-16 13:03:40 (46560): Guest Log: -rw-r-----. 1 atlas atlas    508883 Apr 16 03:51 input.tar.gz
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas      8577 Apr 16 03:51 init_data.xml
2025-04-16 13:03:40 (46560): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 03:51 EVNT.44075162._001339.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Apr 16 03:52 pandaJob.out
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 03:52 setup.sh.local
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas    986044 Apr 16 03:53 agis_schedconf.cvmfs.json
2025-04-16 13:03:40 (46560): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 03:53 pilot3
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas 193842587 Apr 16 20:01 HITS.44075164._034261.pool.root.1
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas      1036 Apr 16 20:02 memory_monitor_summary.json
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas        98 Apr 16 20:02 pilot_heartbeat.json
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 20:02 agis_ddmendpoints.agis.ALL.json
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas    514267 Apr 16 20:02 log.44075164._034261.job.log.tgz.1
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas      7746 Apr 16 20:03 heartbeat.json
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas      4916 Apr 16 20:03 pilotlog.txt
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas   2787166 Apr 16 20:03 log.44075164._034261.job.log.1
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 20:03 output.list
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 20:03 runtime_log
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas   3317760 Apr 16 20:03 result.tar.gz
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas       672 Apr 16 20:03 WF3MDmGxbN7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgdPLDmLOZLJn.diag
2025-04-16 13:03:40 (46560): Guest Log: -rw-r--r--. 1 atlas atlas     10975 Apr 16 20:03 runtime_log.err
2025-04-16 13:03:40 (46560): Guest Log: Looking for outputfile HITS.44075164._034261.pool.root.1
2025-04-16 13:03:40 (46560): Guest Log: HITS file was successfully produced
2025-04-16 13:03:40 (46560): Guest Log: -rw-------. 1 atlas atlas 193842587 Apr 16 20:01 /home/atlas/RunAtlas/HITS.44075164._034261.pool.root.1
2025-04-16 13:03:41 (46560): Guest Log: Successfully finished the ATLAS job!
2025-04-16 13:03:41 (46560): Guest Log: Copying the results back to the shared directory!
2025-04-16 13:03:41 (46560): Guest Log:  *** Contents of shared directory: ***
2025-04-16 13:03:41 (46560): Guest Log: total 218784
2025-04-16 13:03:41 (46560): Guest Log: -rw-rw----. 1 root root 220168207 Apr 16 03:50 ATLAS.root_0
2025-04-16 13:03:41 (46560): Guest Log: -rw-rw-r--. 1 root root      8577 Apr 16 03:50 init_data.xml
2025-04-16 13:03:41 (46560): Guest Log: -rw-rw----. 1 root root    508883 Apr 16 03:50 input.tar.gz
2025-04-16 13:03:41 (46560): Guest Log: -rw-r--r--. 1 root root   3317760 Apr 16  2025 result.tar.gz
2025-04-16 13:03:41 (46560): Guest Log: -rw-rw----. 1 root root     17569 Apr 16 03:50 start_atlas.sh
2025-04-16 13:03:41 (46560): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 13:03:42 (46560): VM Completion File Detected.
2025-04-16 13:03:42 (46560): Powering off VM.
2025-04-16 13:03:44 (46560): Successfully stopped VM.
2025-04-16 13:03:44 (46560): Deregistering VM. (boinc_b5be88cae4f3bb4c, slot#2)
2025-04-16 13:03:44 (46560): Removing network bandwidth throttle group from VM.
2025-04-16 13:03:44 (46560): Removing VM from VirtualBox.
13:03:49 (46560): called boinc_finish(0)

</stderr_txt>
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