Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:59:55 (17026): wrapper (7.7.26015): starting
19:59:55 (17026): wrapper: running run_atlas (--nthreads 8)
[2025-04-11 19:59:55] Arguments: --nthreads 8
[2025-04-11 19:59:55] Threads: 8
[2025-04-11 19:59:55] Checking for CVMFS
[2025-04-11 19:59:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-11 19:59:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-11 19:59:57] Running cvmfs_config stat atlas.cern.ch
[2025-04-11 20:00:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-11 20:00:00] 2.11.2.0 44558 31662 396696 144776 3 429 11136079 18432001 19369 130560 0 134325906 98.931 328067644 36584 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-11 20:00:00] CVMFS is ok
[2025-04-11 20:00:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-11 20:00:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-11 20:00:00] Further information can be found at the LHC@home message board.
[2025-04-11 20:00:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-11 20:00:00] Checking for apptainer binary...
[2025-04-11 20:00:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-11 20:00:00] Running /usr/bin/apptainer --version
[2025-04-11 20:00:01] apptainer version 1.3.2-1.el7
[2025-04-11 20:00:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-11 20:00:42] c-211-12.aglt2.org
[2025-04-11 20:00:42] apptainer works
[2025-04-11 20:00:42] Set ATHENA_PROC_NUMBER=8
[2025-04-11 20:00:42] Set ATHENA_CORE_NUMBER=8
[2025-04-11 20:00:42] Starting ATLAS job with PandaID=6600382760
[2025-04-11 20:00:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-13 01:26:38]  *** The last 200 lines of the pilot log: ***
[2025-04-13 01:26:38] 2025-04-13 05:25:58,087 | INFO     | PID=12401 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-13 01:26:38] 2025-04-13 05:25:58,087 | INFO     | .. there are 50 such processes running
[2025-04-13 01:26:38] 2025-04-13 05:25:58,939 | INFO     | monitor loop #4161: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:25:58,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:01,464 | INFO     | monitor loop #4162: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:26:01,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:03,988 | INFO     | monitor loop #4163: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:26:03,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:06,500 | INFO     | monitor loop #4164: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:26:06,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:09,072 | INFO     | monitor loop #4165: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:26:09,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:11,154 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-13 01:26:38] 2025-04-13 05:26:11,155 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6600382760/memory_monitor_summary.json (trf name=prmon)
[2025-04-13 01:26:38] 2025-04-13 05:26:11,156 | INFO     | extracted standard info from prmon json
[2025-04-13 01:26:38] 2025-04-13 05:26:11,156 | INFO     | extracted standard memory fields from prmon json
[2025-04-13 01:26:38] 2025-04-13 05:26:11,156 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-13 01:26:38] 2025-04-13 05:26:11,157 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-13 01:26:38] 2025-04-13 05:26:11,157 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-13 01:26:38] 2025-04-13 05:26:11,425 | INFO     | fitting pss+swap vs Time
[2025-04-13 01:26:38] 2025-04-13 05:26:11,432 | INFO     | sum of square deviations: 1583330904388.0195
[2025-04-13 01:26:38] 2025-04-13 05:26:11,583 | INFO     | monitor loop #4166: job 0:6600382760 is in state 'finished'
[2025-04-13 01:26:38] 2025-04-13 05:26:11,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-13 01:26:38] 2025-04-13 05:26:11,657 | INFO     | sum of deviations: 2786121661373.093
[2025-04-13 01:26:38] 2025-04-13 05:26:11,657 | INFO     | mean x: 1744469325.9006968
[2025-04-13 01:26:38] 2025-04-13 05:26:11,657 | INFO     | mean y: 2501530.6788617885
[2025-04-13 01:26:38] 2025-04-13 05:26:11,657 | INFO     | -- intersect: -3067168721.460521
[2025-04-13 01:26:38] 2025-04-13 05:26:11,657 | INFO     | intersect: -3067168721.460521
[2025-04-13 01:26:38] 2025-04-13 05:26:11,664 | INFO     | chi2: 25.025405929551464
[2025-04-13 01:26:38] 2025-04-13 05:26:11,671 | INFO     | sum of square deviations: 1569579268089.4885
[2025-04-13 01:26:38] 2025-04-13 05:26:11,771 | INFO     | sum of deviations: 3131415509305.519
[2025-04-13 01:26:38] 2025-04-13 05:26:11,772 | INFO     | mean x: 1744469173.4041934
[2025-04-13 01:26:38] 2025-04-13 05:26:11,772 | INFO     | mean y: 2505355.2615026208
[2025-04-13 01:26:38] 2025-04-13 05:26:11,772 | INFO     | -- intersect: -3477827200.196168
[2025-04-13 01:26:38] 2025-04-13 05:26:11,772 | INFO     | intersect: -3477827200.196168
[2025-04-13 01:26:38] 2025-04-13 05:26:11,795 | INFO     | chi2: 22.761602072554773
[2025-04-13 01:26:38] 2025-04-13 05:26:11,795 | INFO     | current chi2=22.761602072554773 (change=9.046022523548597 %)
[2025-04-13 01:26:38] 2025-04-13 05:26:11,795 | INFO     | right removable region: 1716
[2025-04-13 01:26:38] 2025-04-13 05:26:11,802 | INFO     | sum of square deviations: 1569578006853.4915
[2025-04-13 01:26:38] 2025-04-13 05:26:12,125 | INFO     | sum of deviations: 2136635639698.6848
[2025-04-13 01:26:38] 2025-04-13 05:26:12,126 | INFO     | mean x: 1744469478.4041934
[2025-04-13 01:26:38] 2025-04-13 05:26:12,126 | INFO     | mean y: 2508732.5998835177
[2025-04-13 01:26:38] 2025-04-13 05:26:12,126 | INFO     | -- intersect: -2372203224.148941
[2025-04-13 01:26:38] 2025-04-13 05:26:12,126 | INFO     | intersect: -2372203224.148941
[2025-04-13 01:26:38] 2025-04-13 05:26:12,128 | INFO     | chi2: 19.764109951584636
[2025-04-13 01:26:38] 2025-04-13 05:26:12,129 | INFO     | current chi2=19.764109951584636 (change=21.02381872556953 %)
[2025-04-13 01:26:38] 2025-04-13 05:26:12,129 | INFO     | left removable region: 10
[2025-04-13 01:26:38] 2025-04-13 05:26:12,133 | INFO     | sum of square deviations: 1539603744454.813
[2025-04-13 01:26:38] 2025-04-13 05:26:12,433 | INFO     | sum of deviations: 1890659982614.7385
[2025-04-13 01:26:38] 2025-04-13 05:26:12,433 | INFO     | mean x: 1744469447.912075
[2025-04-13 01:26:38] 2025-04-13 05:26:12,434 | INFO     | mean y: 2519227.1049237982
[2025-04-13 01:26:38] 2025-04-13 05:26:12,434 | INFO     | -- intersect: -2139719376.782927
[2025-04-13 01:26:38] 2025-04-13 05:26:12,434 | INFO     | intersect: -2139719376.782927
[2025-04-13 01:26:38] 2025-04-13 05:26:12,440 | INFO     | chi2: 13.148596156603832
[2025-04-13 01:26:38] 2025-04-13 05:26:12,441 | INFO     | -- intersect: -2139719376.782927
[2025-04-13 01:26:38] 2025-04-13 05:26:12,445 | INFO     | current memory leak: 1.23 B/s (using 1706 data points, chi2=13.15)
[2025-04-13 01:26:38] 2025-04-13 05:26:12,447 | INFO     | ..............................
[2025-04-13 01:26:38] 2025-04-13 05:26:12,447 | INFO     | . Timing measurements:
[2025-04-13 01:26:38] 2025-04-13 05:26:12,447 | INFO     | . get job = 1 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,447 | INFO     | . initial setup = 16 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,447 | INFO     | . payload setup = 173 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,448 | INFO     | . stage-in = 0 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,448 | INFO     | . payload execution = 105186 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,448 | INFO     | . stage-out = 8 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,448 | INFO     | . log creation = 1 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,448 | INFO     | ..............................
[2025-04-13 01:26:38] 2025-04-13 05:26:12,742 | INFO     | 
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | job summary report
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | --------------------------------------------------
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | PanDA job id: 6600382760
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | task id: 44075164
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | errors: (none)
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | pilot state: finished 
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | transexitcode: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:12,743 | INFO     | exeerrorcode: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | exeerrordiag: 
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | exitcode: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | exitmsg: OK
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | cpuconsumptiontime: 65970 s
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | nevents: 400
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | neventsw: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | pid: 39845
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | pgrp: 39845
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | corecount: 8
[2025-04-13 01:26:38] 2025-04-13 05:26:12,744 | INFO     | event service: False
[2025-04-13 01:26:38] 2025-04-13 05:26:12,745 | INFO     | sizes: {0: 2417100, 1: 2417156, 2: 2417184, 3: 2417212, 4: 2417212, 6: 2417411, 7: 2417567, 19: 2417595, 31: 2417623, 42: 2417651, 57: 2417707, 68: 2418015, 79: 24
[2025-04-13 01:26:38] 2025-04-13 05:26:12,745 | INFO     | --------------------------------------------------
[2025-04-13 01:26:38] 2025-04-13 05:26:12,745 | INFO     | 
[2025-04-13 01:26:38] 2025-04-13 05:26:12,745 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-13 01:26:38] 2025-04-13 05:26:13,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-13 01:26:38] 2025-04-13 05:26:13,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-13 01:26:38] 2025-04-13 05:26:13,554 | INFO     | job 6600382760 has completed (purged errors)
[2025-04-13 01:26:38] 2025-04-13 05:26:13,554 | INFO     | overall cleanup function is called
[2025-04-13 01:26:38] 2025-04-13 05:26:14,568 | INFO     | --- collectZombieJob: --- 10, [39845]
[2025-04-13 01:26:38] 2025-04-13 05:26:14,568 | INFO     | zombie collector waiting for pid 39845
[2025-04-13 01:26:38] 2025-04-13 05:26:14,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-13 01:26:38] 2025-04-13 05:26:14,569 | INFO     | collected zombie processes
[2025-04-13 01:26:38] 2025-04-13 05:26:14,569 | INFO     | will attempt to kill all subprocesses of pid=39845
[2025-04-13 01:26:38] 2025-04-13 05:26:17,145 | INFO     | process IDs to be killed: [39845] (in reverse order)
[2025-04-13 01:26:38] 2025-04-13 05:26:19,186 | WARNING  | found no corresponding commands to process id(s)
[2025-04-13 01:26:38] 2025-04-13 05:26:19,186 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-13 01:26:38] 2025-04-13 05:26:19,202 | INFO     | did not find any defunct processes belonging to 39845
[2025-04-13 01:26:38] 2025-04-13 05:26:19,218 | INFO     | did not find any defunct processes belonging to 39845
[2025-04-13 01:26:38] 2025-04-13 05:26:19,218 | INFO     | ready for new job
[2025-04-13 01:26:38] 2025-04-13 05:26:19,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-13 01:26:38] 2025-04-13 05:26:19,224 | INFO     | **************************************
[2025-04-13 01:26:38] 2025-04-13 05:26:19,224 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-13 01:26:38] 2025-04-13 05:26:19,224 | INFO     | **************************************
[2025-04-13 01:26:38] 2025-04-13 05:26:19,224 | INFO     | 
[2025-04-13 01:26:38] 2025-04-13 05:26:19,227 | INFO     | architecture information:
[2025-04-13 01:26:38] 2025-04-13 05:26:19,230 | INFO     | executing command: cat /etc/os-release
[2025-04-13 01:26:38] 2025-04-13 05:26:19,544 | INFO     | cat /etc/os-release:
[2025-04-13 01:26:38] NAME="CentOS Linux"
[2025-04-13 01:26:38] VERSION="7 (Core)"
[2025-04-13 01:26:38] ID="centos"
[2025-04-13 01:26:38] ID_LIKE="rhel fedora"
[2025-04-13 01:26:38] VERSION_ID="7"
[2025-04-13 01:26:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-13 01:26:38] ANSI_COLOR="0;31"
[2025-04-13 01:26:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-13 01:26:38] HOME_URL="https://www.centos.org/"
[2025-04-13 01:26:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-13 01:26:38] 
[2025-04-13 01:26:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-13 01:26:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-13 01:26:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-13 01:26:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-13 01:26:38] 
[2025-04-13 01:26:38] 2025-04-13 05:26:19,544 | INFO     | **************************************
[2025-04-13 01:26:38] 2025-04-13 05:26:20,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-13 01:26:38] 2025-04-13 05:26:20,312 | INFO     | sufficient remaining disk space (56576966656 B)
[2025-04-13 01:26:38] 2025-04-13 05:26:20,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-13 01:26:38] 2025-04-13 05:26:20,323 | INFO     | current server update state: UPDATING_FINAL
[2025-04-13 01:26:38] 2025-04-13 05:26:20,324 | INFO     | update_server=False
[2025-04-13 01:26:38] 2025-04-13 05:26:20,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-13 01:26:38] 2025-04-13 05:26:20,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-13 01:26:38] 2025-04-13 05:26:20,352 | INFO     | aborting loop
[2025-04-13 01:26:38] 2025-04-13 05:26:20,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-13 01:26:38] 2025-04-13 05:26:20,401 | INFO     | all job control threads have been joined
[2025-04-13 01:26:38] 2025-04-13 05:26:20,726 | INFO     | all data control threads have been joined
[2025-04-13 01:26:38] 2025-04-13 05:26:20,792 | INFO     | all payload control threads have been joined
[2025-04-13 01:26:38] 2025-04-13 05:26:21,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-13 01:26:38] 2025-04-13 05:26:21,330 | INFO     | [job] retrieve thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:21,366 | INFO     | [job] job monitor thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:21,419 | INFO     | [job] control thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:21,579 | INFO     | [payload] failed_post thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:21,744 | INFO     | [data] control thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:21,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-13 01:26:38] 2025-04-13 05:26:21,798 | INFO     | [payload] control thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,204 | INFO     | [job] validate thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,210 | INFO     | [job] create_data_payload thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,215 | INFO     | [payload] execute_payloads thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,221 | INFO     | [payload] validate_pre thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,226 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,379 | INFO     | [data] copytool_out thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,430 | INFO     | [payload] validate_post thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,759 | INFO     | [data] copytool_in thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:22,836 | INFO     | [job] queue monitor thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:25,256 | INFO     | [data] queue_monitor thread has finished
[2025-04-13 01:26:38] 2025-04-13 05:26:26,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436519659328)>', '<ExcThread(monitor, started 140436052088576)>']
[2025-04-13 01:26:38] 2025-04-13 05:26:27,048 | INFO     | PID=12401 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-13 01:26:38] 2025-04-13 05:26:27,048 | INFO     | .. there are 50 such processes running
[2025-04-13 01:26:38] 2025-04-13 05:26:27,049 | INFO     | found 0 job(s) in 20 queues
[2025-04-13 01:26:38] 2025-04-13 05:26:27,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-13 01:26:38] 2025-04-13 05:26:27,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-13 01:26:38] 2025-04-13 05:26:27,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-13 01:26:38] 2025-04-13 05:26:27,066 | INFO     | [monitor] control thread has ended
[2025-04-13 01:26:38] 2025-04-13 05:26:31,567 | INFO     | all workflow threads have been joined
[2025-04-13 01:26:38] 2025-04-13 05:26:31,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-13 01:26:38] 2025-04-13 05:26:31,568 | INFO     | traces error code: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:31,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-13 01:26:38] 2025-04-13 05:26:34,198 [wrapper] ==== pilot stdout END ====
[2025-04-13 01:26:38] 2025-04-13 05:26:34,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-13 01:26:38] 2025-04-13 05:26:34,302 [wrapper] pilotpid: 12401
[2025-04-13 01:26:38] 2025-04-13 05:26:34,333 [wrapper] Pilot exit status: 0
[2025-04-13 01:26:38] 2025-04-13 05:26:34,752 [wrapper] pandaids: 6600382760
[2025-04-13 01:26:38] 2025-04-13 05:26:36,148 [wrapper] cleanup supervisor_pilot 44645 12402
[2025-04-13 01:26:38] 2025-04-13 05:26:36,183 [wrapper] Test setup, not cleaning
[2025-04-13 01:26:38] 2025-04-13 05:26:36,315 [wrapper] apfmon messages muted
[2025-04-13 01:26:38] 2025-04-13 05:26:36,350 [wrapper] ==== wrapper stdout END ====
[2025-04-13 01:26:38] 2025-04-13 05:26:36,415 [wrapper] ==== wrapper stderr END ====
[2025-04-13 01:26:38]  *** Error codes and diagnostics ***
[2025-04-13 01:26:38]     "exeErrorCode": 0,
[2025-04-13 01:26:38]     "exeErrorDiag": "",
[2025-04-13 01:26:38]     "pilotErrorCode": 0,
[2025-04-13 01:26:38]     "pilotErrorDiag": "",
[2025-04-13 01:26:38]  *** Listing of results directory ***
[2025-04-13 01:26:38] total 430444
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas    495897 Apr 11 18:01 pilot3.tar.gz
[2025-04-13 01:26:38] -rwx------ 1 boincer umatlas     37140 Apr 11 18:17 runpilot2-wrapper.sh
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas      5111 Apr 11 18:17 queuedata.json
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas       100 Apr 11 19:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-13 01:26:38] -rwxr-xr-x 1 boincer umatlas      7986 Apr 11 19:59 run_atlas
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas       105 Apr 11 19:59 job.xml
[2025-04-13 01:26:38] -rw-r--r-- 2 boincer umatlas 219459796 Apr 11 19:59 EVNT.44075162._001334.pool.root.1
[2025-04-13 01:26:38] -rw-r--r-- 2 boincer umatlas     17569 Apr 11 19:59 start_atlas.sh
[2025-04-13 01:26:38] drwxrwx--x 2 boincer umatlas      4096 Apr 11 19:59 shared
[2025-04-13 01:26:38] -rw-r--r-- 2 boincer umatlas    508885 Apr 11 19:59 input.tar.gz
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas         0 Apr 11 19:59 boinc_lockfile
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas      2550 Apr 11 20:00 pandaJob.out
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas       467 Apr 11 20:01 setup.sh.local
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas    986068 Apr 11 20:04 agis_schedconf.cvmfs.json
[2025-04-13 01:26:38] drwx------ 4 boincer umatlas      4096 Apr 11 20:04 pilot3
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas      6135 Apr 13 01:20 init_data.xml
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas 203052454 Apr 13 01:20 HITS.44075164._034160.pool.root.1
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas       532 Apr 13 01:20 boinc_task_state.xml
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas      1061 Apr 13 01:24 memory_monitor_summary.json
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas   1603529 Apr 13 01:24 agis_ddmendpoints.agis.ALL.json
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas   1002252 Apr 13 01:24 log.44075164._034160.job.log.tgz.1
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas        95 Apr 13 01:25 pilot_heartbeat.json
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas      7768 Apr 13 01:26 heartbeat.json
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas      8192 Apr 13 01:26 boinc_mmap_file
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas        28 Apr 13 01:26 wrapper_checkpoint.txt
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas      4746 Apr 13 01:26 pilotlog.txt
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas   6206168 Apr 13 01:26 log.44075164._034160.job.log.1
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas       357 Apr 13 01:26 output.list
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas       620 Apr 13 01:26 runtime_log
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas   7229440 Apr 13 01:26 result.tar.gz
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas     11420 Apr 13 01:26 runtime_log.err
[2025-04-13 01:26:38] -rw------- 1 boincer umatlas       666 Apr 13 01:26 mMpNDmDsbN7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmXaxKDmjdDYom.diag
[2025-04-13 01:26:38] -rw-r--r-- 1 boincer umatlas     21602 Apr 13 01:26 stderr.txt
[2025-04-13 01:26:38] HITS file was successfully produced:
[2025-04-13 01:26:39] -rw------- 1 boincer umatlas 203052454 Apr 13 01:20 shared/HITS.pool.root.1
[2025-04-13 01:26:39]  *** Contents of shared directory: ***
[2025-04-13 01:26:39] total 420200
[2025-04-13 01:26:39] -rw-r--r-- 2 boincer umatlas 219459796 Apr 11 19:59 ATLAS.root_0
[2025-04-13 01:26:39] -rw-r--r-- 2 boincer umatlas     17569 Apr 11 19:59 start_atlas.sh
[2025-04-13 01:26:39] -rw-r--r-- 2 boincer umatlas    508885 Apr 11 19:59 input.tar.gz
[2025-04-13 01:26:39] -rw------- 1 boincer umatlas 203052454 Apr 13 01:20 HITS.pool.root.1
[2025-04-13 01:26:39] -rw------- 1 boincer umatlas   7229440 Apr 13 01:26 result.tar.gz
01:26:40 (17026): run_atlas exited; CPU time 70672.123724
01:26:40 (17026): called boinc_finish(0)

</stderr_txt>
]]>

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