Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-12 01:56:21 (7380): Detected: vboxwrapper 26206
2025-04-12 01:56:21 (7380): Detected: BOINC client v7.16.20
2025-04-12 01:56:22 (7380): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-12 01:56:22 (7380): Successfully copied 'init_data.xml' to the shared directory.
2025-04-12 01:56:23 (7380): Create VM. (boinc_4785279a208be37d, slot#1)
2025-04-12 01:56:23 (7380): Setting Memory Size for VM. (4800MB)
2025-04-12 01:56:23 (7380): Setting CPU Count for VM. (8)
2025-04-12 01:56:24 (7380): Setting Chipset Options for VM.
2025-04-12 01:56:24 (7380): Setting Graphics Controller Options for VM.
2025-04-12 01:56:24 (7380): Setting Boot Options for VM.
2025-04-12 01:56:24 (7380): Setting Network Configuration for NAT.
2025-04-12 01:56:25 (7380): Enabling VM Network Access.
2025-04-12 01:56:25 (7380): Disabling USB Support for VM.
2025-04-12 01:56:25 (7380): Disabling COM Port Support for VM.
2025-04-12 01:56:25 (7380): Disabling LPT Port Support for VM.
2025-04-12 01:56:26 (7380): Disabling Audio Support for VM.
2025-04-12 01:56:26 (7380): Disabling Clipboard Support for VM.
2025-04-12 01:56:26 (7380): Disabling Drag and Drop Support for VM.
2025-04-12 01:56:26 (7380): Adding storage controller(s) to VM.
2025-04-12 01:56:27 (7380): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-12 01:56:27 (7380): Adding VirtualBox Guest Additions to VM.
2025-04-12 01:56:27 (7380): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-12 01:56:28 (7380): forwarding host port 54390 to guest port 80
2025-04-12 01:56:28 (7380): Enabling remote desktop for VM.
2025-04-12 01:56:28 (7380): Required extension pack not installed, remote desktop not enabled.
2025-04-12 01:56:28 (7380): Enabling shared directory for VM.
2025-04-12 01:56:29 (7380): Starting VM using VBoxManage interface. (boinc_4785279a208be37d, slot#1)
2025-04-12 01:56:32 (7380): Successfully started VM. (PID = '3232')
2025-04-12 01:56:32 (7380): Reporting VM Process ID to BOINC.
2025-04-12 01:56:32 (7380): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-12 01:56:32 (7380): Guest Log: CPUID EDX: 0x178bfbff
2025-04-12 01:56:32 (7380): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-12 01:56:32 (7380): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-12 01:56:32 (7380): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-12 01:56:32 (7380): Detected: Web Application Enabled (http://localhost:54390)
2025-04-12 01:56:32 (7380): Preference change detected
2025-04-12 01:56:32 (7380): Setting CPU throttle for VM. (100%)
2025-04-12 01:56:33 (7380): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-12 01:56:34 (7380): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-12 01:56:34 (7380): Guest Log: BIOS: Booting from Hard Disk...
2025-04-12 01:56:37 (7380): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-12 01:56:37 (7380): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-12 01:56:37 (7380): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-12 01:56:41 (7380): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-12 01:56:41 (7380): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-12 01:56:47 (7380): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000110 main     Log opened 2025-04-12T01:56:45.904504000Z
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000184 main     OS Product: Linux
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000203 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000219 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000234 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000234 main     Process ID: 1367
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000234 main     Package type: LINUX_64BITS_GENERIC
2025-04-12 01:56:47 (7380): Guest Log: 00:00:00.000727 main     5.2.32 r132073 started. Verbose level = 0
2025-04-12 01:56:47 (7380): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-12 01:56:47 (7380): Guest Log: [INFO] Mounting shared directory
2025-04-12 01:56:47 (7380): Guest Log: [INFO] Checking for init_data.xml
2025-04-12 01:56:49 (7380): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-12 01:56:49 (7380): Guest Log: [INFO] Detected branch: prod
2025-04-12 01:56:49 (7380): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-12 01:56:49 (7380): Guest Log: Copying input files
2025-04-12 01:56:50 (7380): Guest Log: Copied input files into RunAtlas.
2025-04-12 01:56:50 (7380): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-12 01:56:50 (7380): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-12 01:56:50 (7380): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-12 01:56:50 (7380): Guest Log: Further information can be found at the LHC@home message board.
2025-04-12 01:56:57 (7380): Guest Log: 00:00:10.030637 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 587 576 000ns (GuestNow=1 744 415 817 319 209 000 ns GuestLast=1 744 423 005 906 785 000 ns fSetTimeLastLoop=true )
2025-04-12 01:57:03 (7380): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-12 01:57:03 (7380): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-12 01:57:03 (7380): Guest Log: 2.6.3.0 1644 0 30184 144776 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-12 01:57:04 (7380): Guest Log: copied the webapp to /var/www
2025-04-12 01:57:04 (7380): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-12 01:57:04 (7380): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-12 01:57:04 (7380): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-12 01:57:04 (7380): Guest Log:  *** Starting ATLAS job. (PandaID=6585060912 taskID=44004367) ***
2025-04-12 03:03:49 (7380): Guest Log:  *** Job finished ***
2025-04-12 03:03:49 (7380): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:34,548 | INFO     | [data] copytool_out thread has finished
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:34,698 | INFO     | [payload] execute_payloads thread has finished
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:36,595 | INFO     | [data] queue_monitor thread has finished
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:38,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307576571712)>', '<ExcThread(monitor, started 140306817201920)>']
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:38,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:38,594 | INFO     | [monitor] control thread has ended
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,551 | INFO     | all workflow threads have been joined
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,551 | INFO     | end of generic workflow (traces error code: 0)
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,551 | INFO     | traces error code: 0
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,615 [wrapper] ==== pilot stdout END ====
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,620 [wrapper] ==== wrapper stdout RESUME ====
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,624 [wrapper] pilotpid: 5999
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,628 [wrapper] Pilot exit status: 0
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,816 [wrapper] pandaids: 6585060912
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,844 [wrapper] cleanup supervisor_pilot 31441 6000
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,848 [wrapper] Test setup, not cleaning
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,853 [wrapper] apfmon messages muted
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,857 [wrapper] ==== wrapper stdout END ====
2025-04-12 03:03:49 (7380): Guest Log: 2025-04-12 01:03:43,861 [wrapper] ==== wrapper stderr END ====
2025-04-12 03:03:49 (7380): Guest Log:  *** Error codes and diagnostics ***
2025-04-12 03:03:49 (7380): Guest Log:     "exeErrorCode": 0,
2025-04-12 03:03:49 (7380): Guest Log:     "exeErrorDiag": "",
2025-04-12 03:03:49 (7380): Guest Log:     "pilotErrorCode": 0,
2025-04-12 03:03:49 (7380): Guest Log:     "pilotErrorDiag": "",
2025-04-12 03:03:49 (7380): Guest Log:  *** Listing of results directory ***
2025-04-12 03:03:49 (7380): Guest Log: total 199212
2025-04-12 03:03:49 (7380): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  3 11:27 pilot3.tar.gz
2025-04-12 03:03:49 (7380): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 11:34 runpilot2-wrapper.sh
2025-04-12 03:03:49 (7380): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 11:34 queuedata.json
2025-04-12 03:03:49 (7380): Guest Log: -rwxr-xr-x. 1 atlas atlas    507238 Apr 11 23:56 input.tar.gz
2025-04-12 03:03:49 (7380): Guest Log: -rwxr-xr-x. 1 atlas atlas      8773 Apr 11 23:56 init_data.xml
2025-04-12 03:03:49 (7380): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 11 23:56 start_atlas.sh
2025-04-12 03:03:49 (7380): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 11 23:56 EVNT.44004365._000407.pool.root.1 -> /data/./ATLAS.root_0
2025-04-12 03:03:49 (7380): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Apr 11 23:57 pandaJob.out
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas       424 Apr 11 23:57 setup.sh.local
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas    986068 Apr 11 23:57 agis_schedconf.cvmfs.json
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 11 23:57 agis_ddmendpoints.agis.ALL.json
2025-04-12 03:03:49 (7380): Guest Log: drwx------. 4 atlas atlas      4096 Apr 11 23:57 pilot3
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas 198947605 Apr 12 01:02 HITS.44004367._010136.pool.root.1
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas        95 Apr 12 01:03 pilot_heartbeat.json
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas      1025 Apr 12 01:03 memory_monitor_summary.json
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas    290845 Apr 12 01:03 log.44004367._010136.job.log.tgz.1
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas      7711 Apr 12 01:03 heartbeat.json
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas      4588 Apr 12 01:03 pilotlog.txt
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas    348246 Apr 12 01:03 log.44004367._010136.job.log.1
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas       357 Apr 12 01:03 output.list
2025-04-12 03:03:49 (7380): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 12 01:03 runtime_log
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas    655360 Apr 12 01:03 result.tar.gz
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas       651 Apr 12 01:03 ytHNDmA1XK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmqBHLDmXXhdXn.diag
2025-04-12 03:03:49 (7380): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 12 01:03 runtime_log.err
2025-04-12 03:03:49 (7380): Guest Log: Looking for outputfile HITS.44004367._010136.pool.root.1
2025-04-12 03:03:49 (7380): Guest Log: HITS file was successfully produced
2025-04-12 03:03:49 (7380): Guest Log: -rw-------. 1 atlas atlas 198947605 Apr 12 01:02 /home/atlas/RunAtlas/HITS.44004367._010136.pool.root.1
2025-04-12 03:03:50 (7380): Guest Log: Successfully finished the ATLAS job!
2025-04-12 03:03:50 (7380): Guest Log: Copying the results back to the shared directory!
2025-04-12 03:03:50 (7380): Guest Log:  *** Contents of shared directory: ***
2025-04-12 03:03:50 (7380): Guest Log: total 411024
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root 220740250 Apr 11 23:56 ATLAS.root_0
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root 198947605 Apr 12  2025 HITS.pool.root.1
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root      8773 Apr 11 23:56 init_data.xml
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root    507238 Apr 11 15:24 input.tar.gz
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root    655360 Apr 12  2025 result.tar.gz
2025-04-12 03:03:50 (7380): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 11 15:24 start_atlas.sh
2025-04-12 03:03:50 (7380): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-12 03:03:50 (7380): VM Completion File Detected.
2025-04-12 03:03:50 (7380): Powering off VM.
2025-04-12 03:03:50 (7380): Successfully stopped VM.
2025-04-12 03:03:50 (7380): Deregistering VM. (boinc_4785279a208be37d, slot#1)
2025-04-12 03:03:51 (7380): Removing network bandwidth throttle group from VM.
2025-04-12 03:03:51 (7380): Removing VM from VirtualBox.
03:03:56 (7380): called boinc_finish(0)

</stderr_txt>
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