Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:31:29 (3865751): wrapper (7.7.26015): starting
22:31:29 (3865751): wrapper: running run_atlas (--nthreads 4)
[2025-04-11 22:31:29] Arguments: --nthreads 4
[2025-04-11 22:31:29] Threads: 4
[2025-04-11 22:31:29] Checking for CVMFS
[2025-04-11 22:31:29] No cvmfs_config command found, will try listing directly
[2025-04-11 22:31:29] CVMFS is ok
[2025-04-11 22:31:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-11 22:31:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-11 22:31:29] Further information can be found at the LHC@home message board.
[2025-04-11 22:31:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-11 22:31:29] Checking for apptainer binary...
[2025-04-11 22:31:29] which: no apptainer in ((null))
[2025-04-11 22:31:29] apptainer is not installed, using version from CVMFS
[2025-04-11 22:31:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-11 22:31:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-04-11 22:31:29] apptainer works
[2025-04-11 22:31:29] Set ATHENA_PROC_NUMBER=4
[2025-04-11 22:31:29] Set ATHENA_CORE_NUMBER=4
[2025-04-11 22:31:29] Starting ATLAS job with PandaID=6596320113
[2025-04-11 22:31:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:17:51 (3981116): wrapper (7.7.26015): starting
23:17:51 (3981116): wrapper: running run_atlas (--nthreads 4)
[2025-04-11 23:17:51] Arguments: --nthreads 4
[2025-04-11 23:17:51] Threads: 4
[2025-04-11 23:17:51] This job has been restarted, cleaning up previous attempt
[2025-04-11 23:17:51] Checking for CVMFS
[2025-04-11 23:17:51] No cvmfs_config command found, will try listing directly
[2025-04-11 23:17:51] CVMFS is ok
[2025-04-11 23:17:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-11 23:17:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-11 23:17:51] Further information can be found at the LHC@home message board.
[2025-04-11 23:17:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-11 23:17:51] Checking for apptainer binary...
[2025-04-11 23:17:51] which: no apptainer in ((null))
[2025-04-11 23:17:51] apptainer is not installed, using version from CVMFS
[2025-04-11 23:17:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-11 23:17:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-04-11 23:17:52] apptainer works
[2025-04-11 23:17:52] Set ATHENA_PROC_NUMBER=4
[2025-04-11 23:17:52] Set ATHENA_CORE_NUMBER=4
[2025-04-11 23:17:52] Starting ATLAS job with PandaID=6596320113
[2025-04-11 23:17:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-12 02:26:31]  *** The last 200 lines of the pilot log: ***
[2025-04-12 02:26:31] 2025-04-12 00:26:12,218 | INFO     | extracted standard info from prmon json
[2025-04-12 02:26:31] 2025-04-12 00:26:12,218 | INFO     | extracted standard memory fields from prmon json
[2025-04-12 02:26:31] 2025-04-12 00:26:12,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-12 02:26:31] 2025-04-12 00:26:12,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-12 02:26:31] 2025-04-12 00:26:12,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-12 02:26:31] 2025-04-12 00:26:12,222 | INFO     | fitting pss+swap vs Time
[2025-04-12 02:26:31] 2025-04-12 00:26:12,223 | INFO     | sum of square deviations: 1963274020.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,224 | INFO     | sum of deviations: 73583099824.99997
[2025-04-12 02:26:31] 2025-04-12 00:26:12,225 | INFO     | mean x: 1744411919.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,225 | INFO     | mean y: 2266870.6162162162
[2025-04-12 02:26:31] 2025-04-12 00:26:12,225 | INFO     | -- intersect: -65377927164.497
[2025-04-12 02:26:31] 2025-04-12 00:26:12,225 | INFO     | intersect: -65377927164.497
[2025-04-12 02:26:31] 2025-04-12 00:26:12,225 | INFO     | chi2: 4.699577855573008
[2025-04-12 02:26:31] 2025-04-12 00:26:12,226 | INFO     | sum of square deviations: 1808350185.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | sum of deviations: 83172618977.00003
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | mean x: 1744411766.5
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | mean y: 2276052.988888889
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | -- intersect: -80229581912.12093
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | intersect: -80229581912.12093
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | chi2: 3.888240983057013
[2025-04-12 02:26:31] 2025-04-12 00:26:12,227 | INFO     | current chi2=3.888240983057013 (change=17.264037269940506 %)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,228 | INFO     | right removable region: 179
[2025-04-12 02:26:31] 2025-04-12 00:26:12,228 | INFO     | sum of square deviations: 1808350185.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,229 | INFO     | sum of deviations: 30394147736.999992
[2025-04-12 02:26:31] 2025-04-12 00:26:12,229 | INFO     | mean x: 1744412071.5
[2025-04-12 02:26:31] 2025-04-12 00:26:12,229 | INFO     | mean y: 2309260.2
[2025-04-12 02:26:31] 2025-04-12 00:26:12,229 | INFO     | -- intersect: -29317187956.196274
[2025-04-12 02:26:31] 2025-04-12 00:26:12,229 | INFO     | intersect: -29317187956.196274
[2025-04-12 02:26:31] 2025-04-12 00:26:12,230 | INFO     | chi2: 2.1733072209105244
[2025-04-12 02:26:31] 2025-04-12 00:26:12,230 | INFO     | current chi2=2.1733072209105244 (change=53.755267223984774 %)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,230 | INFO     | sum of square deviations: 1661798600.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,231 | INFO     | sum of deviations: -793681919.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,231 | INFO     | mean x: 1744412224.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,231 | INFO     | mean y: 2341631.9485714287
[2025-04-12 02:26:31] 2025-04-12 00:26:12,231 | INFO     | -- intersect: 835480161.1730983
[2025-04-12 02:26:31] 2025-04-12 00:26:12,231 | INFO     | intersect: 835480161.1730983
[2025-04-12 02:26:31] 2025-04-12 00:26:12,232 | INFO     | chi2: 0.9049975290062371
[2025-04-12 02:26:31] 2025-04-12 00:26:12,232 | INFO     | current chi2=0.9049975290062371 (change=58.35850908243515 %)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,232 | INFO     | sum of square deviations: 1523386702.5
[2025-04-12 02:26:31] 2025-04-12 00:26:12,233 | INFO     | sum of deviations: -6671147940.999999
[2025-04-12 02:26:31] 2025-04-12 00:26:12,233 | INFO     | mean x: 1744412376.5
[2025-04-12 02:26:31] 2025-04-12 00:26:12,233 | INFO     | mean y: 2348051.6117647057
[2025-04-12 02:26:31] 2025-04-12 00:26:12,233 | INFO     | -- intersect: 7641401887.807956
[2025-04-12 02:26:31] 2025-04-12 00:26:12,233 | INFO     | intersect: 7641401887.807956
[2025-04-12 02:26:31] 2025-04-12 00:26:12,234 | INFO     | chi2: 0.8494793219871131
[2025-04-12 02:26:31] 2025-04-12 00:26:12,234 | INFO     | current chi2=0.8494793219871131 (change=6.134625260257633 %)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,234 | INFO     | left removable region: 30
[2025-04-12 02:26:31] 2025-04-12 00:26:12,234 | INFO     | sum of square deviations: 1025693650.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,238 | INFO     | sum of deviations: 2426587503.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,238 | INFO     | mean x: 1744412651.0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | mean y: 2362854.275167785
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | -- intersect: -4124571088.4198074
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | intersect: -4124571088.4198074
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | chi2: 0.0005898874556309055
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | -- intersect: -4124571088.4198074
[2025-04-12 02:26:31] 2025-04-12 00:26:12,239 | INFO     | current memory leak: 2.37 B/s (using 149 data points, chi2=0.00)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | ..............................
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . Timing measurements:
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . get job = 0 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . initial setup = 1 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . payload setup = 5 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . stage-in = 0 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . payload execution = 11248 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . stage-out = 1 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,240 | INFO     | . log creation = 0 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,241 | INFO     | ..............................
[2025-04-12 02:26:31] 2025-04-12 00:26:12,368 | INFO     | 
[2025-04-12 02:26:31] 2025-04-12 00:26:12,368 | INFO     | job summary report
[2025-04-12 02:26:31] 2025-04-12 00:26:12,368 | INFO     | --------------------------------------------------
[2025-04-12 02:26:31] 2025-04-12 00:26:12,368 | INFO     | PanDA job id: 6596320113
[2025-04-12 02:26:31] 2025-04-12 00:26:12,368 | INFO     | task id: 44075164
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | errors: (none)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | pilot state: finished 
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | transexitcode: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | exeerrorcode: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | exeerrordiag: 
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | exitcode: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | exitmsg: OK
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | cpuconsumptiontime: 41448 s
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | nevents: 400
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | neventsw: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,369 | INFO     | pid: 3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | pgrp: 3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | corecount: 4
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | event service: False
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | sizes: {0: 2417166, 1: 2417365, 5: 2417571, 11: 2417627, 11257: 2446651, 11259: 2455614, 11262: 2455798, 11275: 2455968}
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | --------------------------------------------------
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | 
[2025-04-12 02:26:31] 2025-04-12 00:26:12,370 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2025-04-12 02:26:31] 2025-04-12 00:26:12,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | job 6596320113 has completed (purged errors)
[2025-04-12 02:26:31] 2025-04-12 00:26:12,395 | INFO     | overall cleanup function is called
[2025-04-12 02:26:31] 2025-04-12 00:26:13,403 | INFO     | --- collectZombieJob: --- 10, [3991672]
[2025-04-12 02:26:31] 2025-04-12 00:26:13,403 | INFO     | zombie collector waiting for pid 3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:13,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-12 02:26:31] 2025-04-12 00:26:13,403 | INFO     | collected zombie processes
[2025-04-12 02:26:31] 2025-04-12 00:26:13,403 | INFO     | will attempt to kill all subprocesses of pid=3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:13,745 | INFO     | process IDs to be killed: [3991672] (in reverse order)
[2025-04-12 02:26:31] 2025-04-12 00:26:13,856 | WARNING  | found no corresponding commands to process id(s)
[2025-04-12 02:26:31] 2025-04-12 00:26:13,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-12 02:26:31] 2025-04-12 00:26:13,874 | INFO     | did not find any defunct processes belonging to 3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:13,885 | INFO     | did not find any defunct processes belonging to 3991672
[2025-04-12 02:26:31] 2025-04-12 00:26:13,885 | INFO     | ready for new job
[2025-04-12 02:26:31] 2025-04-12 00:26:13,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-12 02:26:31] 2025-04-12 00:26:13,887 | INFO     | **************************************
[2025-04-12 02:26:31] 2025-04-12 00:26:13,888 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-12 02:26:31] 2025-04-12 00:26:13,888 | INFO     | **************************************
[2025-04-12 02:26:31] 2025-04-12 00:26:13,888 | INFO     | 
[2025-04-12 02:26:31] 2025-04-12 00:26:13,892 | INFO     | architecture information:
[2025-04-12 02:26:31] 2025-04-12 00:26:13,909 | INFO     | executing command: cat /etc/os-release
[2025-04-12 02:26:31] 2025-04-12 00:26:13,962 | INFO     | cat /etc/os-release:
[2025-04-12 02:26:31] NAME="CentOS Linux"
[2025-04-12 02:26:31] VERSION="7 (Core)"
[2025-04-12 02:26:31] ID="centos"
[2025-04-12 02:26:31] ID_LIKE="rhel fedora"
[2025-04-12 02:26:31] VERSION_ID="7"
[2025-04-12 02:26:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-12 02:26:31] ANSI_COLOR="0;31"
[2025-04-12 02:26:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-12 02:26:31] HOME_URL="https://www.centos.org/"
[2025-04-12 02:26:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-12 02:26:31] 
[2025-04-12 02:26:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-12 02:26:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-12 02:26:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-12 02:26:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-12 02:26:31] 
[2025-04-12 02:26:31] 2025-04-12 00:26:13,963 | INFO     | **************************************
[2025-04-12 02:26:31] 2025-04-12 00:26:14,465 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2025-04-12 02:26:31] 2025-04-12 00:26:14,520 | INFO     | sufficient remaining disk space (679548551168 B)
[2025-04-12 02:26:31] 2025-04-12 00:26:14,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-12 02:26:31] 2025-04-12 00:26:14,521 | INFO     | current server update state: UPDATING_FINAL
[2025-04-12 02:26:31] 2025-04-12 00:26:14,521 | INFO     | update_server=False
[2025-04-12 02:26:31] 2025-04-12 00:26:14,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-12 02:26:31] 2025-04-12 00:26:14,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-12 02:26:31] 2025-04-12 00:26:14,521 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-12 02:26:31] 2025-04-12 00:26:14,522 | INFO     | found 0 job(s) in 20 queues
[2025-04-12 02:26:31] 2025-04-12 00:26:14,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-12 02:26:31] 2025-04-12 00:26:14,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-12 02:26:31] 2025-04-12 00:26:14,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-12 02:26:31] 2025-04-12 00:26:14,525 | INFO     | aborting loop
[2025-04-12 02:26:31] 2025-04-12 00:26:14,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-12 02:26:31] 2025-04-12 00:26:15,038 | INFO     | all job control threads have been joined
[2025-04-12 02:26:31] 2025-04-12 00:26:15,298 | INFO     | all payload control threads have been joined
[2025-04-12 02:26:31] 2025-04-12 00:26:15,526 | INFO     | [job] retrieve thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:15,530 | INFO     | [job] job monitor thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:15,551 | INFO     | [payload] validate_pre thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:15,602 | INFO     | all data control threads have been joined
[2025-04-12 02:26:31] 2025-04-12 00:26:15,694 | INFO     | [data] copytool_in thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:15,812 | INFO     | [payload] failed_post thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,043 | INFO     | [job] control thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,268 | INFO     | [payload] validate_post thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,303 | INFO     | [payload] control thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,314 | INFO     | [payload] execute_payloads thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,507 | INFO     | [job] validate thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,534 | INFO     | [data] copytool_out thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,607 | INFO     | [data] control thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:16,744 | INFO     | [job] create_data_payload thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:17,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-12 02:26:31] 2025-04-12 00:26:18,352 | INFO     | [job] queue monitor thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:18,527 | INFO     | [data] queue_monitor thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:25,044 | INFO     | job.realtimelogging is not enabled
[2025-04-12 02:26:31] 2025-04-12 00:26:26,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-12 02:26:31] 2025-04-12 00:26:26,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22606077359936)>', '<ExcThread(monitor, started 22605841000192)>']
[2025-04-12 02:26:31] 2025-04-12 00:26:26,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-12 02:26:31] 2025-04-12 00:26:26,582 | INFO     | [monitor] control thread has ended
[2025-04-12 02:26:31] 2025-04-12 00:26:31,476 | INFO     | all workflow threads have been joined
[2025-04-12 02:26:31] 2025-04-12 00:26:31,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-12 02:26:31] 2025-04-12 00:26:31,476 | INFO     | traces error code: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:31,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-12 02:26:31] 2025-04-12 00:26:31,674 [wrapper] ==== pilot stdout END ====
[2025-04-12 02:26:31] 2025-04-12 00:26:31,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-12 02:26:31] 2025-04-12 00:26:31,679 [wrapper] pilotpid: 3984789
[2025-04-12 02:26:31] 2025-04-12 00:26:31,682 [wrapper] Pilot exit status: 0
[2025-04-12 02:26:31] 2025-04-12 00:26:31,718 [wrapper] pandaids: 6596320113 6596320113
[2025-04-12 02:26:31] 2025-04-12 00:26:31,784 [wrapper] cleanup supervisor_pilot  268723 3984790
[2025-04-12 02:26:31] 2025-04-12 00:26:31,787 [wrapper] Test setup, not cleaning
[2025-04-12 02:26:31] 2025-04-12 00:26:31,789 [wrapper] apfmon messages muted
[2025-04-12 02:26:31] 2025-04-12 00:26:31,791 [wrapper] ==== wrapper stdout END ====
[2025-04-12 02:26:31] 2025-04-12 00:26:31,793 [wrapper] ==== wrapper stderr END ====
[2025-04-12 02:26:31]  *** Error codes and diagnostics ***
[2025-04-12 02:26:31]     "exeErrorCode": 0,
[2025-04-12 02:26:31]     "exeErrorDiag": "",
[2025-04-12 02:26:31]     "pilotErrorCode": 0,
[2025-04-12 02:26:31]     "pilotErrorDiag": "",
[2025-04-12 02:26:31]  *** Listing of results directory ***
[2025-04-12 02:26:31] total 625460
[2025-04-12 02:26:31] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc    495897 Apr 10 17:36 pilot3.tar.gz
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc      5111 Apr 10 17:53 queuedata.json
[2025-04-12 02:26:31] -rwx------ 1 boinc boinc     37140 Apr 10 17:53 runpilot2-wrapper.sh
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc       100 Apr 11 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-12 02:26:31] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 21:53 run_atlas
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc       105 Apr 11 21:53 job.xml
[2025-04-12 02:26:31] -rw-r--r-- 3 boinc boinc 218446306 Apr 11 22:31 EVNT.44075162._001119.pool.root.1
[2025-04-12 02:26:31] -rw-r--r-- 3 boinc boinc 218446306 Apr 11 22:31 ATLAS.root_0
[2025-04-12 02:26:31] -rw-r--r-- 2 boinc boinc     17569 Apr 11 22:31 start_atlas.sh
[2025-04-12 02:26:31] drwxrwx--x 2 boinc boinc      4096 Apr 11 22:31 shared
[2025-04-12 02:26:31] -rw-r--r-- 2 boinc boinc    508886 Apr 11 22:31 input.tar.gz
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc         0 Apr 11 22:31 boinc_lockfile
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc      2549 Apr 11 23:17 pandaJob.out
[2025-04-12 02:26:31] -rw------- 1 boinc boinc       424 Apr 11 23:17 setup.sh.local
[2025-04-12 02:26:31] -rw------- 1 boinc boinc    986068 Apr 11 23:17 agis_schedconf.cvmfs.json
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc      6640 Apr 12 01:01 init_data.xml
[2025-04-12 02:26:31] -rw------- 1 boinc boinc 196986718 Apr 12 02:25 HITS.44075164._028218.pool.root.1
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc       529 Apr 12 02:25 boinc_task_state.xml
[2025-04-12 02:26:31] -rw------- 1 boinc boinc      1039 Apr 12 02:25 memory_monitor_summary.json
[2025-04-12 02:26:31] -rw------- 1 boinc boinc   1603529 Apr 12 02:25 agis_ddmendpoints.agis.ALL.json
[2025-04-12 02:26:31] -rw------- 1 boinc boinc    302608 Apr 12 02:25 log.44075164._028218.job.log.tgz.1
[2025-04-12 02:26:31] -rw------- 1 boinc boinc        97 Apr 12 02:26 pilot_heartbeat.json
[2025-04-12 02:26:31] -rw------- 1 boinc boinc      7730 Apr 12 02:26 heartbeat.json
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc      8192 Apr 12 02:26 boinc_mmap_file
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc        27 Apr 12 02:26 wrapper_checkpoint.txt
[2025-04-12 02:26:31] -rw------- 1 boinc boinc      4558 Apr 12 02:26 pilotlog.txt
[2025-04-12 02:26:31] -rw------- 1 boinc boinc   1068760 Apr 12 02:26 log.44075164._028218.job.log.1
[2025-04-12 02:26:31] -rw------- 1 boinc boinc       357 Apr 12 02:26 output.list
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc       620 Apr 12 02:26 runtime_log
[2025-04-12 02:26:31] -rw------- 1 boinc boinc   1392640 Apr 12 02:26 result.tar.gz
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc     11501 Apr 12 02:26 runtime_log.err
[2025-04-12 02:26:31] -rw------- 1 boinc boinc       788 Apr 12 02:26 PW7MDmBP9M7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmChOLDmlEbqVn.diag
[2025-04-12 02:26:31] -rw-r--r-- 1 boinc boinc     22480 Apr 12 02:26 stderr.txt
[2025-04-12 02:26:31] HITS file was successfully produced:
[2025-04-12 02:26:31] -rw------- 1 boinc boinc 196986718 Apr 12 02:25 shared/HITS.pool.root.1
[2025-04-12 02:26:31]  *** Contents of shared directory: ***
[2025-04-12 02:26:31] total 407588
[2025-04-12 02:26:31] -rw-r--r-- 3 boinc boinc 218446306 Apr 11 22:31 ATLAS.root_0
[2025-04-12 02:26:31] -rw-r--r-- 2 boinc boinc     17569 Apr 11 22:31 start_atlas.sh
[2025-04-12 02:26:31] -rw-r--r-- 2 boinc boinc    508886 Apr 11 22:31 input.tar.gz
[2025-04-12 02:26:31] -rw------- 1 boinc boinc 196986718 Apr 12 02:25 HITS.pool.root.1
[2025-04-12 02:26:31] -rw------- 1 boinc boinc   1392640 Apr 12 02:26 result.tar.gz
02:26:33 (3981116): run_atlas exited; CPU time 41838.823216
02:26:33 (3981116): called boinc_finish(0)

</stderr_txt>
]]>

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