Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-09 05:14:26 (9428): Detected: vboxwrapper 26206
2025-04-09 05:14:26 (9428): Detected: BOINC client v8.0.2
2025-04-09 05:14:26 (9428): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-09 05:14:27 (9428): Successfully copied 'init_data.xml' to the shared directory.
2025-04-09 05:14:27 (9428): Create VM. (boinc_662b72b419b603ec, slot#12)
2025-04-09 05:14:28 (9428): Setting Memory Size for VM. (4800MB)
2025-04-09 05:14:28 (9428): Setting CPU Count for VM. (8)
2025-04-09 05:14:28 (9428): Setting Chipset Options for VM.
2025-04-09 05:14:28 (9428): Setting Graphics Controller Options for VM.
2025-04-09 05:14:29 (9428): Setting Boot Options for VM.
2025-04-09 05:14:29 (9428): Setting Network Configuration for NAT.
2025-04-09 05:14:29 (9428): Enabling VM Network Access.
2025-04-09 05:14:29 (9428): Disabling USB Support for VM.
2025-04-09 05:14:30 (9428): Disabling COM Port Support for VM.
2025-04-09 05:14:30 (9428): Disabling LPT Port Support for VM.
2025-04-09 05:14:30 (9428): Disabling Audio Support for VM.
2025-04-09 05:14:30 (9428): Disabling Clipboard Support for VM.
2025-04-09 05:14:31 (9428): Disabling Drag and Drop Support for VM.
2025-04-09 05:14:31 (9428): Adding storage controller(s) to VM.
2025-04-09 05:14:31 (9428): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-09 05:14:34 (9428): Adding VirtualBox Guest Additions to VM.
2025-04-09 05:14:34 (9428): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-09 05:14:34 (9428): forwarding host port 62084 to guest port 80
2025-04-09 05:14:35 (9428): Enabling remote desktop for VM.
2025-04-09 05:14:35 (9428): Required extension pack not installed, remote desktop not enabled.
2025-04-09 05:14:35 (9428): Enabling shared directory for VM.
2025-04-09 05:14:35 (9428): Starting VM using VBoxManage interface. (boinc_662b72b419b603ec, slot#12)
2025-04-09 05:14:41 (9428): Successfully started VM. (PID = '11472')
2025-04-09 05:14:41 (9428): Reporting VM Process ID to BOINC.
2025-04-09 05:14:41 (9428): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-09 05:14:41 (9428): Guest Log: CPUID EDX: 0x178bfbff
2025-04-09 05:14:41 (9428): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-09 05:14:41 (9428): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-09 05:14:41 (9428): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-09 05:14:41 (9428): Detected: Web Application Enabled (http://localhost:62084)
2025-04-09 05:14:41 (9428): Preference change detected
2025-04-09 05:14:41 (9428): Setting CPU throttle for VM. (100%)
2025-04-09 05:14:41 (9428): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-09 05:14:43 (9428): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-09 05:14:43 (9428): Guest Log: BIOS: Booting from Hard Disk...
2025-04-09 05:14:46 (9428): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-09 05:14:46 (9428): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-09 05:14:46 (9428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-09 05:14:52 (9428): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-09 05:14:52 (9428): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-09 05:14:58 (9428): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000233 main     Log opened 2025-04-09T05:14:56.783690000Z
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000307 main     OS Product: Linux
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000339 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000363 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000388 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000389 main     Process ID: 1366
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-04-09 05:14:58 (9428): Guest Log: 00:00:00.002364 main     5.2.32 r132073 started. Verbose level = 0
2025-04-09 05:15:01 (9428): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-09 05:15:01 (9428): Guest Log: [INFO] Mounting shared directory
2025-04-09 05:15:01 (9428): Guest Log: [INFO] Checking for init_data.xml
2025-04-09 05:15:05 (9428): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-09 05:15:05 (9428): Guest Log: [INFO] Detected branch: prod
2025-04-09 05:15:05 (9428): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-09 05:15:05 (9428): Guest Log: Copying input files
2025-04-09 05:15:06 (9428): Guest Log: Copied input files into RunAtlas.
2025-04-09 05:15:07 (9428): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-09 05:15:07 (9428): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-09 05:15:07 (9428): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-09 05:15:07 (9428): Guest Log: Further information can be found at the LHC@home message board.
2025-04-09 05:15:08 (9428): Guest Log: 00:00:10.004905 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 942 105 000ns (GuestNow=1 744 200 907 730 213 000 ns GuestLast=1 744 175 696 788 108 000 ns fSetTimeLastLoop=true )
2025-04-09 05:15:16 (9428): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-09 05:15:17 (9428): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-09 05:15:17 (9428): Guest Log: 2.6.3.0 1673 0 30176 144684 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-09 05:15:18 (9428): Guest Log: copied the webapp to /var/www
2025-04-09 05:15:18 (9428): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-09 05:15:18 (9428): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-09 05:15:18 (9428): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-09 05:15:18 (9428): Guest Log:  *** Starting ATLAS job. (PandaID=6581300829 taskID=43634882) ***
2025-04-09 06:54:44 (9428): Status Report: Elapsed Time: '6000.000000'
2025-04-09 06:54:44 (9428): Status Report: CPU Time: '37909.281250'
2025-04-09 08:34:49 (9428): Status Report: Elapsed Time: '12000.000000'
2025-04-09 08:34:49 (9428): Status Report: CPU Time: '85676.640625'
2025-04-09 09:03:33 (9428): Guest Log:  *** Job finished ***
2025-04-09 09:03:33 (9428): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:23,567 | INFO     | [job] create_data_payload thread has finished
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:24,406 | INFO     | [data] copytool_out thread has finished
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:25,110 | INFO     | [data] queue_monitor thread has finished
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:27,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072919693120)>', '<ExcThread(monitor, started 140072473048832)>']
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:27,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:27,144 | INFO     | [monitor] control thread has ended
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,096 | INFO     | all workflow threads have been joined
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,096 | INFO     | end of generic workflow (traces error code: 0)
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,096 | INFO     | traces error code: 0
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,167 [wrapper] ==== pilot stdout END ====
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,173 [wrapper] ==== wrapper stdout RESUME ====
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,177 [wrapper] pilotpid: 6032
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,183 [wrapper] Pilot exit status: 0
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,373 [wrapper] pandaids: 6581300829
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,405 [wrapper] cleanup supervisor_pilot 15564 6033
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,411 [wrapper] Test setup, not cleaning
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,416 [wrapper] apfmon messages muted
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,420 [wrapper] ==== wrapper stdout END ====
2025-04-09 09:03:33 (9428): Guest Log: 2025-04-09 16:03:32,424 [wrapper] ==== wrapper stderr END ====
2025-04-09 09:03:33 (9428): Guest Log:  *** Error codes and diagnostics ***
2025-04-09 09:03:33 (9428): Guest Log:     "exeErrorCode": 0,
2025-04-09 09:03:33 (9428): Guest Log:     "exeErrorDiag": "",
2025-04-09 09:03:33 (9428): Guest Log:     "pilotErrorCode": 0,
2025-04-09 09:03:33 (9428): Guest Log:     "pilotErrorDiag": "",
2025-04-09 09:03:33 (9428): Guest Log:  *** Listing of results directory ***
2025-04-09 09:03:33 (9428): Guest Log: total 295580
2025-04-09 09:03:33 (9428): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 31 18:24 runpilot2-wrapper.sh
2025-04-09 09:03:33 (9428): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 31 18:24 queuedata.json
2025-04-09 09:03:33 (9428): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 31 18:24 pilot3.tar.gz
2025-04-09 09:03:33 (9428): Guest Log: -rwxr-xr-x. 1 atlas atlas      9242 Apr  9 12:15 init_data.xml
2025-04-09 09:03:33 (9428): Guest Log: -rwxr-xr-x. 1 atlas atlas    507254 Apr  9 12:15 input.tar.gz
2025-04-09 09:03:33 (9428): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  9 12:15 start_atlas.sh
2025-04-09 09:03:33 (9428): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  9 12:15 EVNT.43634880._000870.pool.root.1 -> /data/./ATLAS.root_0
2025-04-09 09:03:33 (9428): Guest Log: -rw-r--r--. 1 atlas atlas      2617 Apr  9 12:15 pandaJob.out
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas       424 Apr  9 12:15 setup.sh.local
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas    985115 Apr  9 12:17 agis_schedconf.cvmfs.json
2025-04-09 09:03:33 (9428): Guest Log: drwx------. 4 atlas atlas      4096 Apr  9 12:17 pilot3
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas        95 Apr  9 16:02 pilot_heartbeat.json
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas 295973852 Apr  9 16:02 HITS.43634882._009814.pool.root.1
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas      1031 Apr  9 16:02 memory_monitor_summary.json
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas   1603528 Apr  9 16:03 agis_ddmendpoints.agis.ALL.json
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas    366490 Apr  9 16:03 log.43634882._009814.job.log.tgz.1
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas      7694 Apr  9 16:03 heartbeat.json
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas      4595 Apr  9 16:03 pilotlog.txt
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas   1097378 Apr  9 16:03 log.43634882._009814.job.log.1
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas       357 Apr  9 16:03 output.list
2025-04-09 09:03:33 (9428): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  9 16:03 runtime_log
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas   1484800 Apr  9 16:03 result.tar.gz
2025-04-09 09:03:33 (9428): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr  9 16:03 runtime_log.err
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas       661 Apr  9 16:03 lMPNDmWzYJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmFTCLDmvebhDn.diag
2025-04-09 09:03:33 (9428): Guest Log: Looking for outputfile HITS.43634882._009814.pool.root.1
2025-04-09 09:03:33 (9428): Guest Log: HITS file was successfully produced
2025-04-09 09:03:33 (9428): Guest Log: -rw-------. 1 atlas atlas 295973852 Apr  9 16:02 /home/atlas/RunAtlas/HITS.43634882._009814.pool.root.1
2025-04-09 09:03:34 (9428): Guest Log: Successfully finished the ATLAS job!
2025-04-09 09:03:34 (9428): Guest Log: Copying the results back to the shared directory!
2025-04-09 09:03:34 (9428): Guest Log:  *** Contents of shared directory: ***
2025-04-09 09:03:34 (9428): Guest Log: total 625584
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root 342591177 Apr  9 12:14 ATLAS.root_0
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root 295973852 Apr  9 16:03 HITS.pool.root.1
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root      9242 Apr  9 12:14 init_data.xml
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root    507254 Apr  9 09:57 input.tar.gz
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root   1484800 Apr  9 16:03 result.tar.gz
2025-04-09 09:03:34 (9428): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  9 09:57 start_atlas.sh
2025-04-09 09:03:34 (9428): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-09 09:03:35 (9428): VM Completion File Detected.
2025-04-09 09:03:35 (9428): Powering off VM.
2025-04-09 09:03:36 (9428): Successfully stopped VM.
2025-04-09 09:03:36 (9428): Deregistering VM. (boinc_662b72b419b603ec, slot#12)
2025-04-09 09:03:36 (9428): Removing network bandwidth throttle group from VM.
2025-04-09 09:03:36 (9428): Removing VM from VirtualBox.
09:03:41 (9428): called boinc_finish(0)

</stderr_txt>
]]>

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