Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-10 17:28:37 (9740): Detected: vboxwrapper 26206
2025-04-10 17:28:37 (9740): Detected: BOINC client v7.16.11
2025-04-10 17:28:38 (9740): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-04-10 17:28:38 (9740): Successfully copied 'init_data.xml' to the shared directory.
2025-04-10 17:28:39 (9740): Create VM. (boinc_ea11a63f2a15bcec, slot#0)
2025-04-10 17:28:39 (9740): Setting Memory Size for VM. (4800MB)
2025-04-10 17:28:39 (9740): Setting CPU Count for VM. (8)
2025-04-10 17:28:40 (9740): Setting Chipset Options for VM.
2025-04-10 17:28:40 (9740): Setting Graphics Controller Options for VM.
2025-04-10 17:28:40 (9740): Setting Boot Options for VM.
2025-04-10 17:28:40 (9740): Setting Network Configuration for NAT.
2025-04-10 17:28:41 (9740): Enabling VM Network Access.
2025-04-10 17:28:41 (9740): Disabling USB Support for VM.
2025-04-10 17:28:41 (9740): Disabling COM Port Support for VM.
2025-04-10 17:28:41 (9740): Disabling LPT Port Support for VM.
2025-04-10 17:28:42 (9740): Disabling Audio Support for VM.
2025-04-10 17:28:42 (9740): Disabling Clipboard Support for VM.
2025-04-10 17:28:42 (9740): Disabling Drag and Drop Support for VM.
2025-04-10 17:28:42 (9740): Adding storage controller(s) to VM.
2025-04-10 17:28:43 (9740): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-10 17:28:43 (9740): Adding VirtualBox Guest Additions to VM.
2025-04-10 17:28:43 (9740): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-10 17:28:44 (9740): forwarding host port 56232 to guest port 80
2025-04-10 17:28:44 (9740): Enabling remote desktop for VM.
2025-04-10 17:28:44 (9740): Required extension pack not installed, remote desktop not enabled.
2025-04-10 17:28:44 (9740): Enabling shared directory for VM.
2025-04-10 17:28:45 (9740): Starting VM using VBoxManage interface. (boinc_ea11a63f2a15bcec, slot#0)
2025-04-10 17:28:48 (9740): Successfully started VM. (PID = '1804')
2025-04-10 17:28:48 (9740): Reporting VM Process ID to BOINC.
2025-04-10 17:28:48 (9740): Guest Log: BIOS: VirtualBox 6.1.12
2025-04-10 17:28:48 (9740): Guest Log: CPUID EDX: 0x178bfbff
2025-04-10 17:28:48 (9740): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-10 17:28:48 (9740): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-10 17:28:48 (9740): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-10 17:28:48 (9740): Detected: Web Application Enabled (http://localhost:56232)
2025-04-10 17:28:48 (9740): Preference change detected
2025-04-10 17:28:48 (9740): Setting CPU throttle for VM. (100%)
2025-04-10 17:28:48 (9740): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-10 17:28:50 (9740): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-10 17:28:50 (9740): Guest Log: BIOS: Booting from Hard Disk...
2025-04-10 17:28:53 (9740): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-10 17:28:53 (9740): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-10 17:28:53 (9740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-10 17:29:00 (9740): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-10 17:29:00 (9740): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-10 17:29:04 (9740): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000087 main     Log opened 2025-04-10T17:29:02.396544000Z
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000157 main     OS Product: Linux
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000193 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000209 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000210 main     Process ID: 1381
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000210 main     Package type: LINUX_64BITS_GENERIC
2025-04-10 17:29:04 (9740): Guest Log: 00:00:00.000840 main     5.2.32 r132073 started. Verbose level = 0
2025-04-10 17:29:04 (9740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-10 17:29:04 (9740): Guest Log: [INFO] Mounting shared directory
2025-04-10 17:29:04 (9740): Guest Log: [INFO] Checking for init_data.xml
2025-04-10 17:29:12 (9740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-10 17:29:12 (9740): Guest Log: [INFO] Detected branch: prod
2025-04-10 17:29:13 (9740): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-10 17:29:13 (9740): Guest Log: Copying input files
2025-04-10 17:29:14 (9740): Guest Log: 00:00:10.001964 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 023 029 000ns (GuestNow=1 744 298 953 375 161 000 ns GuestLast=1 744 306 142 398 190 000 ns fSetTimeLastLoop=true )
2025-04-10 17:29:14 (9740): Guest Log: Copied input files into RunAtlas.
2025-04-10 17:29:14 (9740): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-10 17:29:14 (9740): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-10 17:29:14 (9740): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-10 17:29:14 (9740): Guest Log: Further information can be found at the LHC@home message board.
2025-04-10 17:29:22 (9740): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-10 17:29:22 (9740): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-10 17:29:22 (9740): Guest Log: 2.6.3.0 1665 0 32232 144730 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-10 17:29:22 (9740): Guest Log: copied the webapp to /var/www
2025-04-10 17:29:23 (9740): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-10 17:29:23 (9740): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-10 17:29:23 (9740): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-10 17:29:23 (9740): Guest Log:  *** Starting ATLAS job. (PandaID=6592670825 taskID=43881073) ***
2025-04-10 19:06:12 (9740): Guest Log:  *** Job finished ***
2025-04-10 19:06:12 (9740): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:05:53,973 | INFO     | [data] queue_monitor thread has finished
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:00,508 | INFO     | job.realtimelogging is not enabled
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:01,509 | INFO     | [payload] run_realtimelog thread has finished
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:02,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955665913664)>', '<ExcThread(monitor, started 139954822817536)>']
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:02,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:02,980 | INFO     | [monitor] control thread has ended
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,788 | INFO     | all workflow threads have been joined
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,788 | INFO     | end of generic workflow (traces error code: 0)
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,789 | INFO     | traces error code: 0
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,877 [wrapper] ==== pilot stdout END ====
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,881 [wrapper] ==== wrapper stdout RESUME ====
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,885 [wrapper] pilotpid: 6054
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:07,888 [wrapper] Pilot exit status: 0
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,392 [wrapper] pandaids: 6592670825
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,420 [wrapper] cleanup supervisor_pilot  1202 6055
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,423 [wrapper] Test setup, not cleaning
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,428 [wrapper] apfmon messages muted
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,432 [wrapper] ==== wrapper stdout END ====
2025-04-10 19:06:12 (9740): Guest Log: 2025-04-10 17:06:09,435 [wrapper] ==== wrapper stderr END ====
2025-04-10 19:06:12 (9740): Guest Log:  *** Error codes and diagnostics ***
2025-04-10 19:06:12 (9740): Guest Log:     "exeErrorCode": 0,
2025-04-10 19:06:12 (9740): Guest Log:     "exeErrorDiag": "",
2025-04-10 19:06:12 (9740): Guest Log:     "pilotErrorCode": 0,
2025-04-10 19:06:12 (9740): Guest Log:     "pilotErrorDiag": "",
2025-04-10 19:06:12 (9740): Guest Log:  *** Listing of results directory ***
2025-04-10 19:06:12 (9740): Guest Log: total 224076
2025-04-10 19:06:12 (9740): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  7 09:57 pilot3.tar.gz
2025-04-10 19:06:12 (9740): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  7 10:04 queuedata.json
2025-04-10 19:06:12 (9740): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  7 10:05 runpilot2-wrapper.sh
2025-04-10 19:06:12 (9740): Guest Log: -rwxr-xr-x. 1 atlas atlas      8788 Apr 10 15:29 init_data.xml
2025-04-10 19:06:12 (9740): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 10 15:29 start_atlas.sh
2025-04-10 19:06:12 (9740): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Apr 10 15:29 input.tar.gz
2025-04-10 19:06:12 (9740): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 10 15:29 EVNT.43881070._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-04-10 19:06:12 (9740): Guest Log: -rw-r--r--. 1 atlas atlas      2610 Apr 10 15:29 pandaJob.out
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas       424 Apr 10 15:29 setup.sh.local
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas    986110 Apr 10 15:33 agis_schedconf.cvmfs.json
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas   1603528 Apr 10 15:33 agis_ddmendpoints.agis.ALL.json
2025-04-10 19:06:12 (9740): Guest Log: drwx------. 4 atlas atlas      4096 Apr 10 15:34 pilot3
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas 223937528 Apr 10 17:05 HITS.43881073._000020.pool.root.1
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas        95 Apr 10 17:05 pilot_heartbeat.json
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas      1037 Apr 10 17:05 memory_monitor_summary.json
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas    374552 Apr 10 17:05 log.43881073._000020.job.log.tgz.1
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas      7693 Apr 10 17:05 heartbeat.json
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 10 17:06 pilotlog.txt
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas    495139 Apr 10 17:06 log.43881073._000020.job.log.1
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas       357 Apr 10 17:06 output.list
2025-04-10 19:06:12 (9740): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 10 17:06 runtime_log
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas    890880 Apr 10 17:06 result.tar.gz
2025-04-10 19:06:12 (9740): Guest Log: -rw-r--r--. 1 atlas atlas     10956 Apr 10 17:06 runtime_log.err
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas       659 Apr 10 17:06 hK4KDmvWyL7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmp6ILDmZLswgn.diag
2025-04-10 19:06:12 (9740): Guest Log: Looking for outputfile HITS.43881073._000020.pool.root.1
2025-04-10 19:06:12 (9740): Guest Log: HITS file was successfully produced
2025-04-10 19:06:12 (9740): Guest Log: -rw-------. 1 atlas atlas 223937528 Apr 10 17:05 /home/atlas/RunAtlas/HITS.43881073._000020.pool.root.1
2025-04-10 19:06:12 (9740): Guest Log: Successfully finished the ATLAS job!
2025-04-10 19:06:12 (9740): Guest Log: Copying the results back to the shared directory!
2025-04-10 19:06:12 (9740): Guest Log:  *** Contents of shared directory: ***
2025-04-10 19:06:12 (9740): Guest Log: total 556256
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root 344225290 Apr 10 15:28 ATLAS.root_0
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root 223937528 Apr 10  2025 HITS.pool.root.1
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root      8788 Apr 10 15:28 init_data.xml
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root    508885 Apr  7 10:07 input.tar.gz
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root    890880 Apr 10  2025 result.tar.gz
2025-04-10 19:06:12 (9740): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  7 10:07 start_atlas.sh
2025-04-10 19:06:12 (9740): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-10 19:06:12 (9740): VM Completion File Detected.
2025-04-10 19:06:12 (9740): Powering off VM.
2025-04-10 19:06:13 (9740): Successfully stopped VM.
2025-04-10 19:06:13 (9740): Deregistering VM. (boinc_ea11a63f2a15bcec, slot#0)
2025-04-10 19:06:13 (9740): Removing network bandwidth throttle group from VM.
2025-04-10 19:06:14 (9740): Removing VM from VirtualBox.
19:06:19 (9740): called boinc_finish(0)

</stderr_txt>
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