Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:59:03 (2021898): wrapper (7.7.26015): starting
23:59:03 (2021898): wrapper: running run_atlas (--nthreads 9)
[2025-04-05 23:59:03] Arguments: --nthreads 9
[2025-04-05 23:59:03] Threads: 9
[2025-04-05 23:59:03] Checking for CVMFS
[2025-04-05 23:59:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-05 23:59:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-05 23:59:05] Running cvmfs_config stat atlas.cern.ch
[2025-04-05 23:59:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-05 23:59:07] 2.12.6.0 1724982 193605 465500 144550 0 506 32881558 32935936 13925 130560 0 26053651 99.840 10637924 20335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-05 23:59:07] CVMFS is ok
[2025-04-05 23:59:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-05 23:59:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-05 23:59:07] Further information can be found at the LHC@home message board.
[2025-04-05 23:59:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-05 23:59:07] Checking for apptainer binary...
[2025-04-05 23:59:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-05 23:59:07] Running /usr/bin/apptainer --version
[2025-04-05 23:59:07] apptainer version 1.4.0-1.el9
[2025-04-05 23:59:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-05 23:59:08] c6-2-29-1.aglt2.org
[2025-04-05 23:59:08] apptainer works
[2025-04-05 23:59:08] Set ATHENA_PROC_NUMBER=9
[2025-04-05 23:59:08] Set ATHENA_CORE_NUMBER=9
[2025-04-05 23:59:08] Starting ATLAS job with PandaID=6584049960
[2025-04-05 23:59:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-06 07:39:33]  *** The last 200 lines of the pilot log: ***
[2025-04-06 07:39:33] 2025-04-06 11:39:13,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 07:39:33] 2025-04-06 11:39:15,874 | INFO     | monitor loop #1773: job 0:6584049960 is in state 'finished'
[2025-04-06 07:39:33] 2025-04-06 11:39:15,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,429 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-06 07:39:33] 2025-04-06 11:39:17,430 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6584049960/memory_monitor_summary.json (trf name=prmon)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,431 | INFO     | extracted standard info from prmon json
[2025-04-06 07:39:33] 2025-04-06 11:39:17,431 | INFO     | extracted standard memory fields from prmon json
[2025-04-06 07:39:33] 2025-04-06 11:39:17,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-06 07:39:33] 2025-04-06 11:39:17,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-06 07:39:33] 2025-04-06 11:39:17,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-06 07:39:33] 2025-04-06 11:39:17,446 | INFO     | fitting pss+swap vs Time
[2025-04-06 07:39:33] 2025-04-06 11:39:17,447 | INFO     | model: linear, x: [1743912278.0, 1743912339.0, 1743912400.0, 1743912462.0, 1743912523.0, 1743912584.0, 1743912644.0, 1743912705.0, 1743912766.0, 1743912827.0, 1743
[2025-04-06 07:39:33] 2025-04-06 11:39:17,447 | INFO     | sum of square deviations: 27693989023.664494
[2025-04-06 07:39:33] 2025-04-06 11:39:17,455 | INFO     | sum of deviations: 708067258866.5371
[2025-04-06 07:39:33] 2025-04-06 11:39:17,455 | INFO     | mean x: 1743925881.3355706
[2025-04-06 07:39:33] 2025-04-06 11:39:17,455 | INFO     | mean y: 2200399.129753915
[2025-04-06 07:39:33] 2025-04-06 11:39:17,455 | INFO     | -- intersect: -44585699791.36058
[2025-04-06 07:39:33] 2025-04-06 11:39:17,455 | INFO     | intersect: -44585699791.36058
[2025-04-06 07:39:33] 2025-04-06 11:39:17,456 | INFO     | chi2: 9.374187993393045
[2025-04-06 07:39:33] 2025-04-06 11:39:17,457 | INFO     | model: linear, x: [1743912278.0, 1743912339.0, 1743912400.0, 1743912462.0, 1743912523.0, 1743912584.0, 1743912644.0, 1743912705.0, 1743912766.0, 1743912827.0, 1743
[2025-04-06 07:39:33] 2025-04-06 11:39:17,458 | INFO     | sum of square deviations: 26775031495.59502
[2025-04-06 07:39:33] 2025-04-06 11:39:17,462 | INFO     | sum of deviations: 698841041138.1744
[2025-04-06 07:39:33] 2025-04-06 11:39:17,462 | INFO     | mean x: 1743925728.8393664
[2025-04-06 07:39:33] 2025-04-06 11:39:17,463 | INFO     | mean y: 2198868.622171946
[2025-04-06 07:39:33] 2025-04-06 11:39:17,463 | INFO     | -- intersect: -45515091081.54111
[2025-04-06 07:39:33] 2025-04-06 11:39:17,463 | INFO     | intersect: -45515091081.54111
[2025-04-06 07:39:33] 2025-04-06 11:39:17,463 | INFO     | chi2: 9.350245810843358
[2025-04-06 07:39:33] 2025-04-06 11:39:17,463 | INFO     | current chi2=9.350245810843358 (change=0.2554054022232304 %)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,464 | INFO     | right removable region: 441
[2025-04-06 07:39:33] 2025-04-06 11:39:17,464 | INFO     | model: linear, x: [1743912584.0, 1743912644.0, 1743912705.0, 1743912766.0, 1743912827.0, 1743912888.0, 1743912949.0, 1743913010.0, 1743913072.0, 1743913132.0, 1743
[2025-04-06 07:39:33] 2025-04-06 11:39:17,464 | INFO     | sum of square deviations: 26774994162.943413
[2025-04-06 07:39:33] 2025-04-06 11:39:17,469 | INFO     | sum of deviations: 582851529117.3209
[2025-04-06 07:39:33] 2025-04-06 11:39:17,469 | INFO     | mean x: 1743926033.8348417
[2025-04-06 07:39:33] 2025-04-06 11:39:17,469 | INFO     | mean y: 2221160.0180995474
[2025-04-06 07:39:33] 2025-04-06 11:39:17,469 | INFO     | -- intersect: -37960437180.90916
[2025-04-06 07:39:33] 2025-04-06 11:39:17,469 | INFO     | intersect: -37960437180.90916
[2025-04-06 07:39:33] 2025-04-06 11:39:17,470 | INFO     | chi2: 5.710236836536867
[2025-04-06 07:39:33] 2025-04-06 11:39:17,470 | INFO     | current chi2=5.710236836536867 (change=39.085531028805285 %)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,471 | INFO     | model: linear, x: [1743912888.0, 1743912949.0, 1743913010.0, 1743913072.0, 1743913132.0, 1743913193.0, 1743913254.0, 1743913315.0, 1743913376.0, 1743913437.0, 1743
[2025-04-06 07:39:33] 2025-04-06 11:39:17,471 | INFO     | sum of square deviations: 25876531475.55152
[2025-04-06 07:39:33] 2025-04-06 11:39:17,475 | INFO     | sum of deviations: 501654204120.1881
[2025-04-06 07:39:33] 2025-04-06 11:39:17,476 | INFO     | mean x: 1743926186.3363845
[2025-04-06 07:39:33] 2025-04-06 11:39:17,476 | INFO     | mean y: 2234934.3592677345
[2025-04-06 07:39:33] 2025-04-06 11:39:17,476 | INFO     | -- intersect: -33806311001.46298
[2025-04-06 07:39:33] 2025-04-06 11:39:17,476 | INFO     | intersect: -33806311001.46298
[2025-04-06 07:39:33] 2025-04-06 11:39:17,476 | INFO     | chi2: 4.421752414737261
[2025-04-06 07:39:33] 2025-04-06 11:39:17,477 | INFO     | current chi2=4.421752414737261 (change=22.564465514902246 %)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,477 | INFO     | left removable region: 20
[2025-04-06 07:39:33] 2025-04-06 11:39:17,477 | INFO     | model: linear, x: [1743913499.0, 1743913560.0, 1743913621.0, 1743913682.0, 1743913743.0, 1743913803.0, 1743913865.0, 1743913925.0, 1743913988.0, 1743914048.0, 1743
[2025-04-06 07:39:33] 2025-04-06 11:39:17,478 | INFO     | sum of square deviations: 23136943271.368195
[2025-04-06 07:39:33] 2025-04-06 11:39:17,482 | INFO     | sum of deviations: 330444493501.87897
[2025-04-06 07:39:33] 2025-04-06 11:39:17,482 | INFO     | mean x: 1743926308.3467934
[2025-04-06 07:39:33] 2025-04-06 11:39:17,482 | INFO     | mean y: 2262658.0213776724
[2025-04-06 07:39:33] 2025-04-06 11:39:17,482 | INFO     | -- intersect: -24904694104.041004
[2025-04-06 07:39:33] 2025-04-06 11:39:17,482 | INFO     | intersect: -24904694104.041004
[2025-04-06 07:39:33] 2025-04-06 11:39:17,483 | INFO     | chi2: 1.6646407245676123
[2025-04-06 07:39:33] 2025-04-06 11:39:17,483 | INFO     | -- intersect: -24904694104.041004
[2025-04-06 07:39:33] 2025-04-06 11:39:17,483 | INFO     | current memory leak: 14.28 B/s (using 421 data points, chi2=1.66)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,484 | INFO     | ..............................
[2025-04-06 07:39:33] 2025-04-06 11:39:17,484 | INFO     | . Timing measurements:
[2025-04-06 07:39:33] 2025-04-06 11:39:17,484 | INFO     | . get job = 0 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,484 | INFO     | . initial setup = 8 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | . payload setup = 64 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | . stage-in = 0 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | . payload execution = 27304 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | . stage-out = 3 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | . log creation = 0 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,485 | INFO     | ..............................
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | 
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | job summary report
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | --------------------------------------------------
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | PanDA job id: 6584049960
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | task id: 43634898
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | errors: (none)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,640 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | pilot state: finished 
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | transexitcode: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | exeerrorcode: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | exeerrordiag: 
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | exitcode: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | exitmsg: OK
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | cpuconsumptiontime: 75365 s
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | nevents: 400
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | neventsw: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | pid: 2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | pgrp: 2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | corecount: 9
[2025-04-06 07:39:33] 2025-04-06 11:39:17,641 | INFO     | event service: False
[2025-04-06 07:39:33] 2025-04-06 11:39:17,642 | INFO     | sizes: {0: 2416571, 1: 2417172, 2: 2417284, 3: 2417284, 4: 2417455, 5: 2417483, 17: 2417667, 28: 2417695, 39: 2417723, 52: 2417985, 63: 2417985, 27372: 2454592, 27
[2025-04-06 07:39:33] 2025-04-06 11:39:17,642 | INFO     | --------------------------------------------------
[2025-04-06 07:39:33] 2025-04-06 11:39:17,642 | INFO     | 
[2025-04-06 07:39:33] 2025-04-06 11:39:17,642 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-06 07:39:33] 2025-04-06 11:39:17,749 | INFO     | job 6584049960 has completed (purged errors)
[2025-04-06 07:39:33] 2025-04-06 11:39:17,749 | INFO     | overall cleanup function is called
[2025-04-06 07:39:33] 2025-04-06 11:39:17,979 | INFO     | PID=2028018 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-06 07:39:33] 2025-04-06 11:39:17,979 | INFO     | .. there are 15 such processes running
[2025-04-06 07:39:33] 2025-04-06 11:39:18,757 | INFO     | --- collectZombieJob: --- 10, [2044638]
[2025-04-06 07:39:33] 2025-04-06 11:39:18,758 | INFO     | zombie collector waiting for pid 2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:18,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-06 07:39:33] 2025-04-06 11:39:18,758 | INFO     | collected zombie processes
[2025-04-06 07:39:33] 2025-04-06 11:39:18,758 | INFO     | will attempt to kill all subprocesses of pid=2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:19,050 | INFO     | process IDs to be killed: [2044638] (in reverse order)
[2025-04-06 07:39:33] 2025-04-06 11:39:19,188 | WARNING  | found no corresponding commands to process id(s)
[2025-04-06 07:39:33] 2025-04-06 11:39:19,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-06 07:39:33] 2025-04-06 11:39:19,217 | INFO     | did not find any defunct processes belonging to 2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:19,252 | INFO     | did not find any defunct processes belonging to 2044638
[2025-04-06 07:39:33] 2025-04-06 11:39:19,252 | INFO     | ready for new job
[2025-04-06 07:39:33] 2025-04-06 11:39:19,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-06 07:39:33] 2025-04-06 11:39:19,262 | INFO     | ***************************************
[2025-04-06 07:39:33] 2025-04-06 11:39:19,262 | INFO     | ***  PanDA Pilot version 3.10.0.24  ***
[2025-04-06 07:39:33] 2025-04-06 11:39:19,262 | INFO     | ***************************************
[2025-04-06 07:39:33] 2025-04-06 11:39:19,262 | INFO     | 
[2025-04-06 07:39:33] 2025-04-06 11:39:19,283 | INFO     | architecture information:
[2025-04-06 07:39:33] 2025-04-06 11:39:19,287 | INFO     | executing command: cat /etc/os-release
[2025-04-06 07:39:33] 2025-04-06 11:39:19,395 | INFO     | cat /etc/os-release:
[2025-04-06 07:39:33] NAME="CentOS Linux"
[2025-04-06 07:39:33] VERSION="7 (Core)"
[2025-04-06 07:39:33] ID="centos"
[2025-04-06 07:39:33] ID_LIKE="rhel fedora"
[2025-04-06 07:39:33] VERSION_ID="7"
[2025-04-06 07:39:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-06 07:39:33] ANSI_COLOR="0;31"
[2025-04-06 07:39:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-06 07:39:33] HOME_URL="https://www.centos.org/"
[2025-04-06 07:39:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-06 07:39:33] 
[2025-04-06 07:39:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-06 07:39:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-06 07:39:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-06 07:39:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-06 07:39:33] 
[2025-04-06 07:39:33] 2025-04-06 11:39:19,396 | INFO     | ***************************************
[2025-04-06 07:39:33] 2025-04-06 11:39:19,899 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-06 07:39:33] 2025-04-06 11:39:19,946 | INFO     | sufficient remaining disk space (76087820288 B)
[2025-04-06 07:39:33] 2025-04-06 11:39:19,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-06 07:39:33] 2025-04-06 11:39:19,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-06 07:39:33] 2025-04-06 11:39:19,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-06 07:39:33] 2025-04-06 11:39:19,947 | INFO     | aborting loop
[2025-04-06 07:39:33] 2025-04-06 11:39:19,986 | INFO     | found 0 job(s) in 20 queues
[2025-04-06 07:39:33] 2025-04-06 11:39:19,987 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-06 07:39:33] 2025-04-06 11:39:19,987 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-06 07:39:33] 2025-04-06 11:39:20,087 | INFO     | all payload control threads have been joined
[2025-04-06 07:39:33] 2025-04-06 11:39:20,586 | INFO     | all data control threads have been joined
[2025-04-06 07:39:33] 2025-04-06 11:39:20,952 | INFO     | [job] retrieve thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:20,953 | INFO     | [job] job monitor thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:20,965 | INFO     | all job control threads have been joined
[2025-04-06 07:39:33] 2025-04-06 11:39:21,049 | INFO     | [payload] failed_post thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,093 | INFO     | [payload] control thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,191 | INFO     | [payload] validate_pre thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,207 | INFO     | [data] copytool_in thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-06 07:39:33] 2025-04-06 11:39:21,443 | INFO     | [payload] validate_post thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,507 | INFO     | [payload] execute_payloads thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,511 | INFO     | [job] create_data_payload thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,593 | INFO     | [data] control thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,830 | INFO     | [job] validate thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:21,971 | INFO     | [job] control thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:22,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:22,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-06 07:39:33] 2025-04-06 11:39:22,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-06 07:39:33] 2025-04-06 11:39:23,218 | INFO     | [data] copytool_out thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:23,659 | INFO     | [job] queue monitor thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:26,789 | INFO     | [data] queue_monitor thread has finished
[2025-04-06 07:39:33] 2025-04-06 11:39:27,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140391137580864)>', '<ExcThread(monitor, started 140390627780352)>']
[2025-04-06 07:39:33] 2025-04-06 11:39:28,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-06 07:39:33] 2025-04-06 11:39:28,034 | INFO     | [monitor] control thread has ended
[2025-04-06 07:39:33] 2025-04-06 11:39:32,714 | INFO     | all workflow threads have been joined
[2025-04-06 07:39:33] 2025-04-06 11:39:32,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-06 07:39:33] 2025-04-06 11:39:32,715 | INFO     | traces error code: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:32,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-06 07:39:33] 2025-04-06 11:39:32,923 [wrapper] ==== pilot stdout END ====
[2025-04-06 07:39:33] 2025-04-06 11:39:32,928 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-06 07:39:33] 2025-04-06 11:39:32,931 [wrapper] pilotpid: 2028018
[2025-04-06 07:39:33] 2025-04-06 11:39:32,934 [wrapper] Pilot exit status: 0
[2025-04-06 07:39:33] 2025-04-06 11:39:32,954 [wrapper] pandaids: 6584049960
[2025-04-06 07:39:33] 2025-04-06 11:39:33,046 [wrapper] cleanup supervisor_pilot 3429278 2028019
[2025-04-06 07:39:33] 2025-04-06 11:39:33,058 [wrapper] Test setup, not cleaning
[2025-04-06 07:39:33] 2025-04-06 11:39:33,061 [wrapper] apfmon messages muted
[2025-04-06 07:39:33] 2025-04-06 11:39:33,064 [wrapper] ==== wrapper stdout END ====
[2025-04-06 07:39:33] 2025-04-06 11:39:33,067 [wrapper] ==== wrapper stderr END ====
[2025-04-06 07:39:33]  *** Error codes and diagnostics ***
[2025-04-06 07:39:33]     "exeErrorCode": 0,
[2025-04-06 07:39:33]     "exeErrorDiag": "",
[2025-04-06 07:39:33]     "pilotErrorCode": 0,
[2025-04-06 07:39:33]     "pilotErrorDiag": "",
[2025-04-06 07:39:33]  *** Listing of results directory ***
[2025-04-06 07:39:33] total 673204
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas    494584 Apr  2 02:39 pilot3.tar.gz
[2025-04-06 07:39:33] -rwx------. 1 boincer umatlas     37140 Apr  2 02:59 runpilot2-wrapper.sh
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas      5112 Apr  2 02:59 queuedata.json
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas       100 Apr  5 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-06 07:39:33] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  5 23:59 run_atlas
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas       105 Apr  5 23:59 job.xml
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas 358500637 Apr  5 23:59 EVNT.43634896._000382.pool.root.1
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas     17571 Apr  5 23:59 start_atlas.sh
[2025-04-06 07:39:33] drwxrwx--x. 2 boincer umatlas      4096 Apr  5 23:59 shared
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas    507247 Apr  5 23:59 input.tar.gz
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas         0 Apr  5 23:59 boinc_lockfile
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas      2599 Apr  5 23:59 pandaJob.out
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas       467 Apr  5 23:59 setup.sh.local
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas    980067 Apr  6 00:00 agis_schedconf.cvmfs.json
[2025-04-06 07:39:33] drwx------. 4 boincer umatlas      4096 Apr  6 00:00 pilot3
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas 320601370 Apr  6 07:38 HITS.43634898._012253.pool.root.1
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas       532 Apr  6 07:38 boinc_task_state.xml
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas      6840 Apr  6 07:38 init_data.xml
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas      1052 Apr  6 07:38 memory_monitor_summary.json
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas   1603525 Apr  6 07:39 agis_ddmendpoints.agis.ALL.json
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas    574015 Apr  6 07:39 log.43634898._012253.job.log.tgz.1
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas        95 Apr  6 07:39 pilot_heartbeat.json
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas      7750 Apr  6 07:39 heartbeat.json
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas      8192 Apr  6 07:39 boinc_mmap_file
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas        28 Apr  6 07:39 wrapper_checkpoint.txt
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas      4219 Apr  6 07:39 pilotlog.txt
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas   2640059 Apr  6 07:39 log.43634898._012253.job.log.1
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas       357 Apr  6 07:39 output.list
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas       620 Apr  6 07:39 runtime_log
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas   3235840 Apr  6 07:39 result.tar.gz
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas     11425 Apr  6 07:39 runtime_log.err
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas       663 Apr  6 07:39 eliLDmCF7J7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm6AFLDmz38PGm.diag
[2025-04-06 07:39:33] -rw-r--r--. 1 boincer umatlas     21843 Apr  6 07:39 stderr.txt
[2025-04-06 07:39:33] HITS file was successfully produced:
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas 320601370 Apr  6 07:38 shared/HITS.pool.root.1
[2025-04-06 07:39:33]  *** Contents of shared directory: ***
[2025-04-06 07:39:33] total 666868
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas 358500637 Apr  5 23:59 ATLAS.root_0
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas     17571 Apr  5 23:59 start_atlas.sh
[2025-04-06 07:39:33] -rw-r--r--. 2 boincer umatlas    507247 Apr  5 23:59 input.tar.gz
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas 320601370 Apr  6 07:38 HITS.pool.root.1
[2025-04-06 07:39:33] -rw-------. 1 boincer umatlas   3235840 Apr  6 07:39 result.tar.gz
07:39:35 (2021898): run_atlas exited; CPU time 75430.165006
07:39:35 (2021898): called boinc_finish(0)

</stderr_txt>
]]>

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