Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:37:02 (97752): wrapper (7.7.26015): starting
19:37:02 (97752): wrapper: running run_atlas (--nthreads 8)
[2025-04-05 19:37:02] Arguments: --nthreads 8
[2025-04-05 19:37:02] Threads: 8
[2025-04-05 19:37:02] Checking for CVMFS
[2025-04-05 19:37:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-05 19:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-05 19:37:03] Running cvmfs_config stat atlas.cern.ch
[2025-04-05 19:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-05 19:37:03] 2.11.2.0 135154 22739 198516 144544 2 156 17805333 18432001 18893 130560 0 117247265 99.092 218546404 41919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-05 19:37:03] CVMFS is ok
[2025-04-05 19:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-05 19:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-05 19:37:03] Further information can be found at the LHC@home message board.
[2025-04-05 19:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-05 19:37:03] Checking for apptainer binary...
[2025-04-05 19:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-05 19:37:03] Running /usr/bin/apptainer --version
[2025-04-05 19:37:04] apptainer version 1.3.2-1.el7
[2025-04-05 19:37:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-05 19:37:11] c-211-35-3.aglt2.org
[2025-04-05 19:37:11] apptainer works
[2025-04-05 19:37:11] Set ATHENA_PROC_NUMBER=8
[2025-04-05 19:37:11] Set ATHENA_CORE_NUMBER=8
[2025-04-05 19:37:11] Starting ATLAS job with PandaID=6584049895
[2025-04-05 19:37:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-06 02:33:39]  *** The last 200 lines of the pilot log: ***
[2025-04-06 02:33:40] 2025-04-06 06:33:17,954 | INFO     | model: linear, x: [1743896345.0, 1743896406.0, 1743896467.0, 1743896528.0, 1743896589.0, 1743896650.0, 1743896711.0, 1743896772.0, 1743896833.0, 1743896894.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,954 | INFO     | sum of square deviations: 20295326788.218357
[2025-04-06 02:33:40] 2025-04-06 06:33:17,958 | INFO     | sum of deviations: 243178416408.6701
[2025-04-06 02:33:40] 2025-04-06 06:33:17,959 | INFO     | mean x: 1743908606.2158809
[2025-04-06 02:33:40] 2025-04-06 06:33:17,959 | INFO     | mean y: 2535841.9578163773
[2025-04-06 02:33:40] 2025-04-06 06:33:17,959 | INFO     | -- intersect: -20892960823.176556
[2025-04-06 02:33:40] 2025-04-06 06:33:17,959 | INFO     | intersect: -20892960823.176556
[2025-04-06 02:33:40] 2025-04-06 06:33:17,960 | INFO     | chi2: 4.915702666296753
[2025-04-06 02:33:40] 2025-04-06 06:33:17,960 | INFO     | current chi2=4.915702666296753 (change=24.382151675929915 %)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,961 | INFO     | right removable region: 402
[2025-04-06 02:33:40] 2025-04-06 06:33:17,961 | INFO     | model: linear, x: [1743896650.0, 1743896711.0, 1743896772.0, 1743896833.0, 1743896894.0, 1743896955.0, 1743897016.0, 1743897077.0, 1743897138.0, 1743897199.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,961 | INFO     | sum of square deviations: 20295273718.218372
[2025-04-06 02:33:40] 2025-04-06 06:33:17,966 | INFO     | sum of deviations: 77689513823.37724
[2025-04-06 02:33:40] 2025-04-06 06:33:17,966 | INFO     | mean x: 1743908911.2158809
[2025-04-06 02:33:40] 2025-04-06 06:33:17,966 | INFO     | mean y: 2547216.1910669976
[2025-04-06 02:33:40] 2025-04-06 06:33:17,966 | INFO     | -- intersect: -6673067872.606583
[2025-04-06 02:33:40] 2025-04-06 06:33:17,966 | INFO     | intersect: -6673067872.606583
[2025-04-06 02:33:40] 2025-04-06 06:33:17,967 | INFO     | chi2: 3.746274641055816
[2025-04-06 02:33:40] 2025-04-06 06:33:17,967 | INFO     | current chi2=3.746274641055816 (change=42.371366451852175 %)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,968 | INFO     | model: linear, x: [1743896955.0, 1743897016.0, 1743897077.0, 1743897138.0, 1743897199.0, 1743897260.0, 1743897321.0, 1743897382.0, 1743897443.0, 1743897504.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,968 | INFO     | sum of square deviations: 19549177380.482433
[2025-04-06 02:33:40] 2025-04-06 06:33:17,973 | INFO     | sum of deviations: -1559498774.3869705
[2025-04-06 02:33:40] 2025-04-06 06:33:17,973 | INFO     | mean x: 1743909063.718593
[2025-04-06 02:33:40] 2025-04-06 06:33:17,973 | INFO     | mean y: 2563414.8090452263
[2025-04-06 02:33:40] 2025-04-06 06:33:17,973 | INFO     | -- intersect: 141680473.0146095
[2025-04-06 02:33:40] 2025-04-06 06:33:17,974 | INFO     | intersect: 141680473.0146095
[2025-04-06 02:33:40] 2025-04-06 06:33:17,974 | INFO     | chi2: 2.4502148474364236
[2025-04-06 02:33:40] 2025-04-06 06:33:17,974 | INFO     | current chi2=2.4502148474364236 (change=34.595963131366226 %)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,975 | INFO     | model: linear, x: [1743897260.0, 1743897321.0, 1743897382.0, 1743897443.0, 1743897504.0, 1743897565.0, 1743897626.0, 1743897687.0, 1743897748.0, 1743897809.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,975 | INFO     | sum of square deviations: 18821593017.7405
[2025-04-06 02:33:40] 2025-04-06 06:33:17,980 | INFO     | sum of deviations: -52700635966.28244
[2025-04-06 02:33:40] 2025-04-06 06:33:17,980 | INFO     | mean x: 1743909216.221374
[2025-04-06 02:33:40] 2025-04-06 06:33:17,980 | INFO     | mean y: 2574100.4860050892
[2025-04-06 02:33:40] 2025-04-06 06:33:17,980 | INFO     | -- intersect: 4885536168.346115
[2025-04-06 02:33:40] 2025-04-06 06:33:17,980 | INFO     | intersect: 4885536168.346115
[2025-04-06 02:33:40] 2025-04-06 06:33:17,981 | INFO     | chi2: 1.7925474533897945
[2025-04-06 02:33:40] 2025-04-06 06:33:17,981 | INFO     | current chi2=1.7925474533897945 (change=26.84121332195518 %)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,982 | INFO     | model: linear, x: [1743897565.0, 1743897626.0, 1743897687.0, 1743897748.0, 1743897809.0, 1743897870.0, 1743897931.0, 1743897992.0, 1743898053.0, 1743898114.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,982 | INFO     | sum of square deviations: 18112288067.49229
[2025-04-06 02:33:40] 2025-04-06 06:33:17,987 | INFO     | sum of deviations: -58052164596.5876
[2025-04-06 02:33:40] 2025-04-06 06:33:17,987 | INFO     | mean x: 1743909368.7242267
[2025-04-06 02:33:40] 2025-04-06 06:33:17,987 | INFO     | mean y: 2575243.0412371135
[2025-04-06 02:33:40] 2025-04-06 06:33:17,987 | INFO     | -- intersect: 5592024424.583915
[2025-04-06 02:33:40] 2025-04-06 06:33:17,987 | INFO     | intersect: 5592024424.583915
[2025-04-06 02:33:40] 2025-04-06 06:33:17,988 | INFO     | chi2: 1.7738752080044264
[2025-04-06 02:33:40] 2025-04-06 06:33:17,988 | INFO     | current chi2=1.7738752080044264 (change=1.0416597535567564 %)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,988 | INFO     | left removable region: 40
[2025-04-06 02:33:40] 2025-04-06 06:33:17,989 | INFO     | model: linear, x: [1743898785.0, 1743898847.0, 1743898907.0, 1743898968.0, 1743899029.0, 1743899090.0, 1743899151.0, 1743899212.0, 1743899273.0, 1743899334.0, 1743
[2025-04-06 02:33:40] 2025-04-06 06:33:17,989 | INFO     | sum of square deviations: 14709610618.069014
[2025-04-06 02:33:40] 2025-04-06 06:33:17,993 | INFO     | sum of deviations: 33726944731.074604
[2025-04-06 02:33:40] 2025-04-06 06:33:17,993 | INFO     | mean x: 1743909795.737569
[2025-04-06 02:33:40] 2025-04-06 06:33:17,993 | INFO     | mean y: 2578500.516574586
[2025-04-06 02:33:40] 2025-04-06 06:33:17,993 | INFO     | -- intersect: -3995946737.4371204
[2025-04-06 02:33:40] 2025-04-06 06:33:17,993 | INFO     | intersect: -3995946737.4371204
[2025-04-06 02:33:40] 2025-04-06 06:33:17,994 | INFO     | chi2: 0.004240316485720784
[2025-04-06 02:33:40] 2025-04-06 06:33:17,994 | INFO     | -- intersect: -3995946737.4371204
[2025-04-06 02:33:40] 2025-04-06 06:33:17,994 | INFO     | current memory leak: 2.29 B/s (using 362 data points, chi2=0.00)
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | ..............................
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . Timing measurements:
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . get job = 0 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . initial setup = 3 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . payload setup = 20 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . stage-in = 0 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . payload execution = 24862 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . stage-out = 3 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | . log creation = 0 s
[2025-04-06 02:33:40] 2025-04-06 06:33:17,996 | INFO     | ..............................
[2025-04-06 02:33:40] 2025-04-06 06:33:18,120 | INFO     | 
[2025-04-06 02:33:40] 2025-04-06 06:33:18,120 | INFO     | job summary report
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | --------------------------------------------------
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | PanDA job id: 6584049895
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | task id: 43634898
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | errors: (none)
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | pilot state: finished 
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | transexitcode: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | exeerrorcode: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | exeerrordiag: 
[2025-04-06 02:33:40] 2025-04-06 06:33:18,121 | INFO     | exitcode: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | exitmsg: OK
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | cpuconsumptiontime: 98301 s
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | nevents: 400
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | neventsw: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | pid: 111642
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | pgrp: 111642
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | corecount: 8
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | event service: False
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | sizes: {0: 2417173, 1: 2417428, 12: 2417428, 13: 2417662, 22: 2417718, 24886: 2453594, 24890: 2462535, 24892: 2462591, 24904: 2462761}
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | --------------------------------------------------
[2025-04-06 02:33:40] 2025-04-06 06:33:18,122 | INFO     | 
[2025-04-06 02:33:40] 2025-04-06 06:33:18,123 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-06 02:33:40] 2025-04-06 06:33:18,167 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,169 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,169 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | job 6584049895 has completed (purged errors)
[2025-04-06 02:33:40] 2025-04-06 06:33:18,170 | INFO     | overall cleanup function is called
[2025-04-06 02:33:40] 2025-04-06 06:33:19,180 | INFO     | --- collectZombieJob: --- 10, [111642]
[2025-04-06 02:33:40] 2025-04-06 06:33:19,180 | INFO     | zombie collector waiting for pid 111642
[2025-04-06 02:33:40] 2025-04-06 06:33:19,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-06 02:33:40] 2025-04-06 06:33:19,181 | INFO     | collected zombie processes
[2025-04-06 02:33:40] 2025-04-06 06:33:19,181 | INFO     | will attempt to kill all subprocesses of pid=111642
[2025-04-06 02:33:40] 2025-04-06 06:33:19,529 | INFO     | process IDs to be killed: [111642] (in reverse order)
[2025-04-06 02:33:40] 2025-04-06 06:33:19,646 | WARNING  | found no corresponding commands to process id(s)
[2025-04-06 02:33:40] 2025-04-06 06:33:19,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-06 02:33:40] 2025-04-06 06:33:19,660 | INFO     | did not find any defunct processes belonging to 111642
[2025-04-06 02:33:40] 2025-04-06 06:33:19,677 | INFO     | did not find any defunct processes belonging to 111642
[2025-04-06 02:33:40] 2025-04-06 06:33:19,678 | INFO     | ready for new job
[2025-04-06 02:33:40] 2025-04-06 06:33:19,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-06 02:33:40] 2025-04-06 06:33:19,682 | INFO     | ***************************************
[2025-04-06 02:33:40] 2025-04-06 06:33:19,682 | INFO     | ***  PanDA Pilot version 3.10.0.24  ***
[2025-04-06 02:33:40] 2025-04-06 06:33:19,682 | INFO     | ***************************************
[2025-04-06 02:33:40] 2025-04-06 06:33:19,682 | INFO     | 
[2025-04-06 02:33:40] 2025-04-06 06:33:19,688 | INFO     | architecture information:
[2025-04-06 02:33:40] 2025-04-06 06:33:19,689 | INFO     | executing command: cat /etc/os-release
[2025-04-06 02:33:40] 2025-04-06 06:33:19,736 | INFO     | cat /etc/os-release:
[2025-04-06 02:33:40] NAME="CentOS Linux"
[2025-04-06 02:33:40] VERSION="7 (Core)"
[2025-04-06 02:33:40] ID="centos"
[2025-04-06 02:33:40] ID_LIKE="rhel fedora"
[2025-04-06 02:33:40] VERSION_ID="7"
[2025-04-06 02:33:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-06 02:33:40] ANSI_COLOR="0;31"
[2025-04-06 02:33:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-06 02:33:40] HOME_URL="https://www.centos.org/"
[2025-04-06 02:33:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-06 02:33:40] 
[2025-04-06 02:33:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-06 02:33:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-06 02:33:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-06 02:33:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-06 02:33:40] 
[2025-04-06 02:33:40] 2025-04-06 06:33:19,736 | INFO     | ***************************************
[2025-04-06 02:33:40] 2025-04-06 06:33:20,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-06 02:33:40] 2025-04-06 06:33:20,402 | INFO     | sufficient remaining disk space (106192437248 B)
[2025-04-06 02:33:40] 2025-04-06 06:33:20,402 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-06 02:33:40] 2025-04-06 06:33:20,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-06 02:33:40] 2025-04-06 06:33:20,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-06 02:33:40] 2025-04-06 06:33:20,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-06 02:33:40] 2025-04-06 06:33:20,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-06 02:33:40] 2025-04-06 06:33:20,625 | INFO     | aborting loop
[2025-04-06 02:33:40] 2025-04-06 06:33:20,725 | INFO     | all data control threads have been joined
[2025-04-06 02:33:40] 2025-04-06 06:33:21,408 | INFO     | [job] retrieve thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,634 | INFO     | [job] job monitor thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,639 | INFO     | all job control threads have been joined
[2025-04-06 02:33:40] 2025-04-06 06:33:21,717 | INFO     | [payload] failed_post thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,732 | INFO     | [data] control thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,763 | INFO     | [payload] execute_payloads thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,854 | INFO     | [payload] validate_post thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:21,871 | INFO     | all payload control threads have been joined
[2025-04-06 02:33:40] 2025-04-06 06:33:22,052 | INFO     | PID=103811 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-06 02:33:40] 2025-04-06 06:33:22,053 | INFO     | .. there are 19 such processes running
[2025-04-06 02:33:40] 2025-04-06 06:33:22,053 | INFO     | found 0 job(s) in 20 queues
[2025-04-06 02:33:40] 2025-04-06 06:33:22,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-06 02:33:40] 2025-04-06 06:33:22,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-06 02:33:40] 2025-04-06 06:33:22,418 | INFO     | [data] copytool_out thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,642 | INFO     | [data] copytool_in thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,643 | INFO     | [payload] validate_pre thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,645 | INFO     | [job] validate thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,650 | INFO     | [job] control thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,651 | INFO     | [job] create_data_payload thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:22,872 | INFO     | [payload] control thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:23,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-06 02:33:40] 2025-04-06 06:33:24,151 | INFO     | [job] queue monitor thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:24,420 | INFO     | [data] queue_monitor thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:30,643 | INFO     | job.realtimelogging is not enabled
[2025-04-06 02:33:40] 2025-04-06 06:33:31,649 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-06 02:33:40] 2025-04-06 06:33:33,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016756361024)>', '<ExcThread(monitor, started 140016319715072)>']
[2025-04-06 02:33:40] 2025-04-06 06:33:34,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-06 02:33:40] 2025-04-06 06:33:34,119 | INFO     | [monitor] control thread has ended
[2025-04-06 02:33:40] 2025-04-06 06:33:38,624 | INFO     | all workflow threads have been joined
[2025-04-06 02:33:40] 2025-04-06 06:33:38,624 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-06 02:33:40] 2025-04-06 06:33:38,625 | INFO     | traces error code: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:38,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-06 02:33:40] 2025-04-06 06:33:38,909 [wrapper] ==== pilot stdout END ====
[2025-04-06 02:33:40] 2025-04-06 06:33:38,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-06 02:33:40] 2025-04-06 06:33:38,919 [wrapper] pilotpid: 103811
[2025-04-06 02:33:40] 2025-04-06 06:33:38,923 [wrapper] Pilot exit status: 0
[2025-04-06 02:33:40] 2025-04-06 06:33:38,946 [wrapper] pandaids: 6584049895
[2025-04-06 02:33:40] 2025-04-06 06:33:39,057 [wrapper] cleanup supervisor_pilot 280570 103812
[2025-04-06 02:33:40] 2025-04-06 06:33:39,063 [wrapper] Test setup, not cleaning
[2025-04-06 02:33:40] 2025-04-06 06:33:39,068 [wrapper] apfmon messages muted
[2025-04-06 02:33:40] 2025-04-06 06:33:39,072 [wrapper] ==== wrapper stdout END ====
[2025-04-06 02:33:40] 2025-04-06 06:33:39,078 [wrapper] ==== wrapper stderr END ====
[2025-04-06 02:33:40]  *** Error codes and diagnostics ***
[2025-04-06 02:33:40]     "exeErrorCode": 0,
[2025-04-06 02:33:40]     "exeErrorDiag": "",
[2025-04-06 02:33:40]     "pilotErrorCode": 0,
[2025-04-06 02:33:40]     "pilotErrorDiag": "",
[2025-04-06 02:33:40]  *** Listing of results directory ***
[2025-04-06 02:33:40] total 671800
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas    494584 Apr  2 02:39 pilot3.tar.gz
[2025-04-06 02:33:40] -rwx------ 1 boincer umatlas     37140 Apr  2 02:55 runpilot2-wrapper.sh
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas      5112 Apr  2 02:55 queuedata.json
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas       100 Apr  5 19:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-06 02:33:40] -rwxr-xr-x 1 boincer umatlas      7986 Apr  5 19:37 run_atlas
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas       105 Apr  5 19:37 job.xml
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas 357585579 Apr  5 19:37 EVNT.43634896._000379.pool.root.1
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas     17571 Apr  5 19:37 start_atlas.sh
[2025-04-06 02:33:40] drwxrwx--x 2 boincer umatlas      4096 Apr  5 19:37 shared
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas    507247 Apr  5 19:37 input.tar.gz
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas         0 Apr  5 19:37 boinc_lockfile
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas      2600 Apr  5 19:37 pandaJob.out
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas       424 Apr  5 19:37 setup.sh.local
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas    980067 Apr  5 19:37 agis_schedconf.cvmfs.json
[2025-04-06 02:33:40] drwx------ 4 boincer umatlas      4096 Apr  5 19:37 pilot3
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas      6300 Apr  6 02:27 init_data.xml
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas 320280802 Apr  6 02:31 HITS.43634898._012188.pool.root.1
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas       531 Apr  6 02:31 boinc_task_state.xml
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas        95 Apr  6 02:32 pilot_heartbeat.json
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas      1061 Apr  6 02:32 memory_monitor_summary.json
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas   1603525 Apr  6 02:33 agis_ddmendpoints.agis.ALL.json
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas    520124 Apr  6 02:33 log.43634898._012188.job.log.tgz.1
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas      7759 Apr  6 02:33 heartbeat.json
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas      8192 Apr  6 02:33 boinc_mmap_file
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas        28 Apr  6 02:33 wrapper_checkpoint.txt
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas      4687 Apr  6 02:33 pilotlog.txt
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas   2594613 Apr  6 02:33 log.43634898._012188.job.log.1
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas       357 Apr  6 02:33 output.list
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas       620 Apr  6 02:33 runtime_log
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas   3133440 Apr  6 02:33 result.tar.gz
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas       666 Apr  6 02:33 XGHODmTB7J7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmtnrKDmSxQRLm.diag
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas     11025 Apr  6 02:33 runtime_log.err
[2025-04-06 02:33:40] -rw-r--r-- 1 boincer umatlas     21750 Apr  6 02:33 stderr.txt
[2025-04-06 02:33:40] HITS file was successfully produced:
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas 320280802 Apr  6 02:31 shared/HITS.pool.root.1
[2025-04-06 02:33:40]  *** Contents of shared directory: ***
[2025-04-06 02:33:40] total 665564
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas 357585579 Apr  5 19:37 ATLAS.root_0
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas     17571 Apr  5 19:37 start_atlas.sh
[2025-04-06 02:33:40] -rw-r--r-- 2 boincer umatlas    507247 Apr  5 19:37 input.tar.gz
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas 320280802 Apr  6 02:31 HITS.pool.root.1
[2025-04-06 02:33:40] -rw------- 1 boincer umatlas   3133440 Apr  6 02:33 result.tar.gz
02:33:41 (97752): run_atlas exited; CPU time 98107.866829
02:33:41 (97752): called boinc_finish(0)

</stderr_txt>
]]>

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