Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-05 13:23:04 (1512): Detected: vboxwrapper 26206
2025-04-05 13:23:04 (1512): Detected: BOINC client v7.16.5
2025-04-05 13:23:04 (1512): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-04-05 13:23:04 (1512): Successfully copied 'init_data.xml' to the shared directory.
2025-04-05 13:23:05 (1512): Create VM. (boinc_d9e12ed7a83a3b88, slot#3)
2025-04-05 13:23:05 (1512): Setting Memory Size for VM. (4400MB)
2025-04-05 13:23:06 (1512): Setting CPU Count for VM. (4)
2025-04-05 13:23:06 (1512): Setting Chipset Options for VM.
2025-04-05 13:23:06 (1512): Setting Graphics Controller Options for VM.
2025-04-05 13:23:06 (1512): Setting Boot Options for VM.
2025-04-05 13:23:07 (1512): Setting Network Configuration for NAT.
2025-04-05 13:23:07 (1512): Enabling VM Network Access.
2025-04-05 13:23:07 (1512): Disabling USB Support for VM.
2025-04-05 13:23:07 (1512): Disabling COM Port Support for VM.
2025-04-05 13:23:08 (1512): Disabling LPT Port Support for VM.
2025-04-05 13:23:08 (1512): Disabling Audio Support for VM.
2025-04-05 13:23:08 (1512): Disabling Clipboard Support for VM.
2025-04-05 13:23:08 (1512): Disabling Drag and Drop Support for VM.
2025-04-05 13:23:09 (1512): Adding storage controller(s) to VM.
2025-04-05 13:23:09 (1512): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-05 13:23:09 (1512): Adding VirtualBox Guest Additions to VM.
2025-04-05 13:23:10 (1512): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-05 13:23:10 (1512): forwarding host port 64683 to guest port 80
2025-04-05 13:23:10 (1512): Enabling remote desktop for VM.
2025-04-05 13:23:11 (1512): Enabling shared directory for VM.
2025-04-05 13:23:11 (1512): Starting VM using VBoxManage interface. (boinc_d9e12ed7a83a3b88, slot#3)
2025-04-05 13:23:16 (1512): Successfully started VM. (PID = '6340')
2025-04-05 13:23:16 (1512): Reporting VM Process ID to BOINC.
2025-04-05 13:23:16 (1512): Guest Log: BIOS: VirtualBox 5.2.44
2025-04-05 13:23:16 (1512): Guest Log: CPUID EDX: 0x178bfbff
2025-04-05 13:23:16 (1512): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-05 13:23:16 (1512): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-05 13:23:16 (1512): Detected: Web Application Enabled (http://localhost:64683)
2025-04-05 13:23:16 (1512): Detected: Remote Desktop Enabled (localhost:64684)
2025-04-05 13:23:16 (1512): Preference change detected
2025-04-05 13:23:16 (1512): Setting CPU throttle for VM. (100%)
2025-04-05 13:23:16 (1512): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-05 13:23:18 (1512): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-05 13:23:18 (1512): Guest Log: BIOS: Booting from Hard Disk...
2025-04-05 13:23:21 (1512): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-05 13:23:21 (1512): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-05 13:23:21 (1512): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-05 13:23:27 (1512): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-05 13:23:27 (1512): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-05 13:23:33 (1512): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000177 main     Log opened 2025-04-05T13:23:30.714649000Z
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000307 main     OS Product: Linux
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000345 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000373 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000398 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000399 main     Process ID: 1302
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.000399 main     Package type: LINUX_64BITS_GENERIC
2025-04-05 13:23:33 (1512): Guest Log: 00:00:00.001563 main     5.2.32 r132073 started. Verbose level = 0
2025-04-05 13:23:33 (1512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-05 13:23:33 (1512): Guest Log: [INFO] Mounting shared directory
2025-04-05 13:23:33 (1512): Guest Log: [INFO] Checking for init_data.xml
2025-04-05 13:23:36 (1512): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-05 13:23:36 (1512): Guest Log: [INFO] Detected branch: prod
2025-04-05 13:23:37 (1512): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-05 13:23:37 (1512): Guest Log: Copying input files
2025-04-05 13:23:39 (1512): Guest Log: Copied input files into RunAtlas.
2025-04-05 13:23:39 (1512): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-05 13:23:39 (1512): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-05 13:23:39 (1512): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-05 13:23:39 (1512): Guest Log: Further information can be found at the LHC@home message board.
2025-04-05 13:23:43 (1512): Guest Log: 00:00:10.007002 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 252 957 000ns (GuestNow=1 743 848 622 467 243 000 ns GuestLast=1 743 859 410 720 200 000 ns fSetTimeLastLoop=true )
2025-04-05 13:23:46 (1512): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-05 13:23:46 (1512): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-05 13:23:46 (1512): Guest Log: 2.6.3.0 1576 0 32208 144524 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-05 13:23:47 (1512): Guest Log: copied the webapp to /var/www
2025-04-05 13:23:47 (1512): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-05 13:23:47 (1512): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-05 13:23:47 (1512): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-05 13:23:47 (1512): Guest Log:  *** Starting ATLAS job. (PandaID=6586447870 taskID=44004367) ***
2025-04-05 15:03:19 (1512): Status Report: Elapsed Time: '6000.000000'
2025-04-05 15:03:19 (1512): Status Report: CPU Time: '20118.906250'
2025-04-05 16:43:22 (1512): Status Report: Elapsed Time: '12000.000000'
2025-04-05 16:43:22 (1512): Status Report: CPU Time: '43669.015625'
2025-04-05 17:05:04 (1512): Guest Log:  *** Job finished ***
2025-04-05 17:05:04 (1512): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:50,806 | INFO     | [payload] failed_post thread has finished
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:50,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:54,981 | INFO     | [data] queue_monitor thread has finished
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:56,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839053846336)>', '<ExcThread(monitor, started 139838598657792)>']
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:56,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:04:56,771 | INFO     | [monitor] control thread has ended
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,769 | INFO     | all workflow threads have been joined
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,770 | INFO     | end of generic workflow (traces error code: 0)
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,770 | INFO     | traces error code: 0
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,892 [wrapper] ==== pilot stdout END ====
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,897 [wrapper] ==== wrapper stdout RESUME ====
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,902 [wrapper] pilotpid: 5900
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:01,913 [wrapper] Pilot exit status: 0
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,036 [wrapper] pandaids: 6586447870
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,074 [wrapper] cleanup supervisor_pilot 11424 5901
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,079 [wrapper] Test setup, not cleaning
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,085 [wrapper] apfmon messages muted
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,090 [wrapper] ==== wrapper stdout END ====
2025-04-05 17:05:04 (1512): Guest Log: 2025-04-05 14:05:02,096 [wrapper] ==== wrapper stderr END ====
2025-04-05 17:05:04 (1512): Guest Log:  *** Error codes and diagnostics ***
2025-04-05 17:05:04 (1512): Guest Log:     "exeErrorCode": 0,
2025-04-05 17:05:04 (1512): Guest Log:     "exeErrorDiag": "",
2025-04-05 17:05:04 (1512): Guest Log:     "pilotErrorCode": 0,
2025-04-05 17:05:04 (1512): Guest Log:     "pilotErrorDiag": "",
2025-04-05 17:05:04 (1512): Guest Log:  *** Listing of results directory ***
2025-04-05 17:05:04 (1512): Guest Log: total 205064
2025-04-05 17:05:04 (1512): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  4 01:13 pilot3.tar.gz
2025-04-05 17:05:04 (1512): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  4 01:18 queuedata.json
2025-04-05 17:05:04 (1512): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  4 01:18 runpilot2-wrapper.sh
2025-04-05 17:05:04 (1512): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Apr  5 10:23 init_data.xml
2025-04-05 17:05:04 (1512): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 Apr  5 10:23 input.tar.gz
2025-04-05 17:05:04 (1512): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  5 10:23 start_atlas.sh
2025-04-05 17:05:04 (1512): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  5 10:23 EVNT.44004365._000143.pool.root.1 -> /data/./ATLAS.root_0
2025-04-05 17:05:04 (1512): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Apr  5 10:23 pandaJob.out
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas       424 Apr  5 10:23 setup.sh.local
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas    979971 Apr  5 10:24 agis_schedconf.cvmfs.json
2025-04-05 17:05:04 (1512): Guest Log: drwx------. 4 atlas atlas      4096 Apr  5 10:24 pilot3
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas 203369241 Apr  5 14:04 HITS.44004367._010966.pool.root.1
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas        95 Apr  5 14:04 pilot_heartbeat.json
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas      1033 Apr  5 14:04 memory_monitor_summary.json
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  5 14:04 agis_ddmendpoints.agis.ALL.json
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas    301944 Apr  5 14:04 log.44004367._010966.job.log.tgz.1
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas      7720 Apr  5 14:04 heartbeat.json
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas      4599 Apr  5 14:05 pilotlog.txt
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas   1120419 Apr  5 14:05 log.44004367._010966.job.log.1
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas       357 Apr  5 14:05 output.list
2025-04-05 17:05:04 (1512): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  5 14:05 runtime_log
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas   1443840 Apr  5 14:05 result.tar.gz
2025-04-05 17:05:04 (1512): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr  5 14:05 runtime_log.err
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas       671 Apr  5 14:05 JveNDm3skK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm8PtKDmEK5oPo.diag
2025-04-05 17:05:04 (1512): Guest Log: Looking for outputfile HITS.44004367._010966.pool.root.1
2025-04-05 17:05:04 (1512): Guest Log: HITS file was successfully produced
2025-04-05 17:05:04 (1512): Guest Log: -rw-------. 1 atlas atlas 203369241 Apr  5 14:04 /home/atlas/RunAtlas/HITS.44004367._010966.pool.root.1
2025-04-05 17:05:05 (1512): Guest Log: Successfully finished the ATLAS job!
2025-04-05 17:05:05 (1512): Guest Log: Copying the results back to the shared directory!
2025-04-05 17:05:05 (1512): Guest Log:  *** Contents of shared directory: ***
2025-04-05 17:05:05 (1512): Guest Log: total 419280
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root 223980815 Apr  5 10:23 ATLAS.root_0
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root 203369241 Apr  5 14:05 HITS.pool.root.1
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root      8857 Apr  5 10:23 init_data.xml
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root    508879 Apr  4 10:15 input.tar.gz
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root   1443840 Apr  5 14:05 result.tar.gz
2025-04-05 17:05:05 (1512): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 10:15 start_atlas.sh
2025-04-05 17:05:05 (1512): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-05 17:05:05 (1512): VM Completion File Detected.
2025-04-05 17:05:05 (1512): Powering off VM.
2025-04-05 17:05:05 (1512): Successfully stopped VM.
2025-04-05 17:05:05 (1512): Deregistering VM. (boinc_d9e12ed7a83a3b88, slot#3)
2025-04-05 17:05:05 (1512): Removing network bandwidth throttle group from VM.
2025-04-05 17:05:05 (1512): Removing VM from VirtualBox.
17:05:11 (1512): called boinc_finish(0)

</stderr_txt>
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