Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:18:23 (4038250): wrapper (7.7.26015): starting
11:18:23 (4038250): wrapper: running run_atlas (--nthreads 12)
[2025-04-06 11:18:23] Arguments: --nthreads 12
[2025-04-06 11:18:23] Threads: 12
[2025-04-06 11:18:23] Checking for CVMFS
[2025-04-06 11:18:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-06 11:18:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-06 11:18:23] Running cvmfs_config stat atlas.cern.ch
[2025-04-06 11:18:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-06 11:18:24] 2.12.7.0 3477254 1719 65612 144562 2 55 2799322 4096001 0 130560 0 1522508 99.991 430375 2104 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-04-06 11:18:24] CVMFS is ok
[2025-04-06 11:18:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-06 11:18:24] Checking for apptainer binary...
[2025-04-06 11:18:24] apptainer is not installed, using version from CVMFS
[2025-04-06 11:18:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-06 11:18:24] ryzen7
[2025-04-06 11:18:24] apptainer works
[2025-04-06 11:18:24] Set ATHENA_PROC_NUMBER=12
[2025-04-06 11:18:24] Set ATHENA_CORE_NUMBER=12
[2025-04-06 11:18:24] Starting ATLAS job with PandaID=6587182296
[2025-04-06 11:18:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-06 12:40:30]  *** The last 200 lines of the pilot log: ***
[2025-04-06 12:40:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-06 12:40:30]  replicas=None
[2025-04-06 12:40:30]  scope=mc23_13p6TeV
[2025-04-06 12:40:30]  status=None
[2025-04-06 12:40:30]  status_code=0
[2025-04-06 12:40:30]  storage_token=
[2025-04-06 12:40:30]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6587182296/log.43634898._021118.job.log.tgz.1
[2025-04-06 12:40:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/a4/log.43634898._021118.job.log.tgz.1
[2025-04-06 12:40:30]  workdir=None
[2025-04-06 12:40:30] ]
[2025-04-06 12:40:30] 2025-04-06 12:40:02,241 | INFO     | transferring file log.43634898._021118.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6587182296/log.43634898._021118.job.log.tgz.1 t
[2025-04-06 12:40:30] 2025-04-06 12:40:02,241 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6587182296/log.43634898._021118.job.log.tgz.1 /opt/boinc/instance_home
[2025-04-06 12:40:30] 2025-04-06 12:40:02,249 | INFO     | adding to output.list: log.43634898._021118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/a4/log.43634898._021118.job.log.tg
[2025-04-06 12:40:30] 2025-04-06 12:40:02,250 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-06 12:40:30] 2025-04-06 12:40:02,250 | INFO     | summary of transferred files:
[2025-04-06 12:40:30] 2025-04-06 12:40:02,250 | INFO     |  -- lfn=log.43634898._021118.job.log.tgz.1, status_code=0, status=transferred
[2025-04-06 12:40:30] 2025-04-06 12:40:02,250 | INFO     | stage-out finished correctly
[2025-04-06 12:40:30] 2025-04-06 12:40:02,996 | INFO     | PID=4041959 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-06 12:40:30] 2025-04-06 12:40:03,945 | WARNING  | process 4048490 can no longer be monitored (due to stat problems) - aborting
[2025-04-06 12:40:30] 2025-04-06 12:40:03,945 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6587182296/memory_monitor_summary.json (trf name=prmon)
[2025-04-06 12:40:30] 2025-04-06 12:40:04,020 | INFO     | number of running child processes to parent process 4048490: 1
[2025-04-06 12:40:30] 2025-04-06 12:40:04,020 | INFO     | maximum number of monitored processes: 6
[2025-04-06 12:40:30] 2025-04-06 12:40:04,118 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-06 12:40:30] 2025-04-06 12:40:05,218 | INFO     | job 6587182296 has state=finished
[2025-04-06 12:40:30] 2025-04-06 12:40:05,218 | INFO     | preparing for final server update for job 6587182296 in state='finished'
[2025-04-06 12:40:30] 2025-04-06 12:40:06,522 | INFO     | monitor loop #366: job 0:6587182296 is in state 'finished'
[2025-04-06 12:40:30] 2025-04-06 12:40:06,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 12:40:30] 2025-04-06 12:40:08,428 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-06 12:40:30] 2025-04-06 12:40:08,428 | INFO     | this job has now completed (state=finished)
[2025-04-06 12:40:30] 2025-04-06 12:40:08,428 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-06 12:40:30] 2025-04-06 12:40:08,428 | INFO     | log transfer has been attempted: DONE
[2025-04-06 12:40:30] 2025-04-06 12:40:08,428 | INFO     | job 6587182296 has finished - writing final server update
[2025-04-06 12:40:30] 2025-04-06 12:40:08,429 | INFO     | total number of processed events: 400 (read)
[2025-04-06 12:40:30] 2025-04-06 12:40:08,447 | INFO     | executing command: lscpu
[2025-04-06 12:40:30] 2025-04-06 12:40:08,461 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-06 12:40:30] 2025-04-06 12:40:09,025 | INFO     | monitor loop #367: job 0:6587182296 is in state 'finished'
[2025-04-06 12:40:30] 2025-04-06 12:40:09,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 12:40:30] 2025-04-06 12:40:11,530 | INFO     | monitor loop #368: job 0:6587182296 is in state 'finished'
[2025-04-06 12:40:30] 2025-04-06 12:40:11,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 12:40:30] 2025-04-06 12:40:14,033 | INFO     | monitor loop #369: job 0:6587182296 is in state 'finished'
[2025-04-06 12:40:30] 2025-04-06 12:40:14,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,115 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-06 12:40:30] 2025-04-06 12:40:15,116 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6587182296/memory_monitor_summary.json (trf name=prmon)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,116 | INFO     | extracted standard info from prmon json
[2025-04-06 12:40:30] 2025-04-06 12:40:15,116 | INFO     | extracted standard memory fields from prmon json
[2025-04-06 12:40:30] 2025-04-06 12:40:15,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-06 12:40:30] 2025-04-06 12:40:15,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-06 12:40:30] 2025-04-06 12:40:15,117 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | fitting pss+swap vs Time
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | sum of square deviations: 120605052.0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | sum of deviations: 14658661364.000002
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | mean x: 1743940842.0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | mean y: 2880348.97260274
[2025-04-06 12:40:30] 2025-04-06 12:40:15,118 | INFO     | -- intersect: -211960365118.77972
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | intersect: -211960365118.77972
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | chi2: 2.365325992122439
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | -- intersect: -211960365118.77972
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | current memory leak: 121.54 B/s (using 73 data points, chi2=2.37)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | ..............................
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . Timing measurements:
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . get job = 0 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . initial setup = 1 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . payload setup = 5 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . stage-in = 0 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,119 | INFO     | . payload execution = 4864 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,120 | INFO     | . stage-out = 0 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,120 | INFO     | . log creation = 0 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,120 | INFO     | ..............................
[2025-04-06 12:40:30] 2025-04-06 12:40:15,324 | INFO     | 
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | job summary report
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | --------------------------------------------------
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | PanDA job id: 6587182296
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | task id: 43634898
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | errors: (none)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | pilot state: finished 
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | transexitcode: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | exeerrorcode: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | exeerrordiag: 
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | exitcode: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | exitmsg: OK
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | cpuconsumptiontime: 43025 s
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | nevents: 400
[2025-04-06 12:40:30] 2025-04-06 12:40:15,325 | INFO     | neventsw: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | pid: 4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | pgrp: 4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | corecount: 12
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | event service: False
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | sizes: {0: 2417195, 1: 2417450, 5: 2417656, 11: 2417712, 4872: 2443959, 4873: 2452946, 4875: 2453130, 4886: 2453300}
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | --------------------------------------------------
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | 
[2025-04-06 12:40:30] 2025-04-06 12:40:15,326 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-04-06 12:40:30] 2025-04-06 12:40:15,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | job 6587182296 has completed (purged errors)
[2025-04-06 12:40:30] 2025-04-06 12:40:15,338 | INFO     | overall cleanup function is called
[2025-04-06 12:40:30] 2025-04-06 12:40:16,342 | INFO     | --- collectZombieJob: --- 10, [4048490]
[2025-04-06 12:40:30] 2025-04-06 12:40:16,342 | INFO     | zombie collector waiting for pid 4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:16,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-06 12:40:30] 2025-04-06 12:40:16,342 | INFO     | collected zombie processes
[2025-04-06 12:40:30] 2025-04-06 12:40:16,342 | INFO     | will attempt to kill all subprocesses of pid=4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:16,422 | INFO     | process IDs to be killed: [4048490] (in reverse order)
[2025-04-06 12:40:30] 2025-04-06 12:40:16,449 | WARNING  | found no corresponding commands to process id(s)
[2025-04-06 12:40:30] 2025-04-06 12:40:16,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-06 12:40:30] 2025-04-06 12:40:16,451 | INFO     | did not find any defunct processes belonging to 4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:16,453 | INFO     | did not find any defunct processes belonging to 4048490
[2025-04-06 12:40:30] 2025-04-06 12:40:16,453 | INFO     | ready for new job
[2025-04-06 12:40:30] 2025-04-06 12:40:16,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-06 12:40:30] 2025-04-06 12:40:16,454 | INFO     | **************************************
[2025-04-06 12:40:30] 2025-04-06 12:40:16,454 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-06 12:40:30] 2025-04-06 12:40:16,454 | INFO     | **************************************
[2025-04-06 12:40:30] 2025-04-06 12:40:16,454 | INFO     | 
[2025-04-06 12:40:30] 2025-04-06 12:40:16,471 | INFO     | architecture information:
[2025-04-06 12:40:30] 2025-04-06 12:40:16,471 | INFO     | executing command: cat /etc/os-release
[2025-04-06 12:40:30] 2025-04-06 12:40:16,477 | INFO     | cat /etc/os-release:
[2025-04-06 12:40:30] NAME="CentOS Linux"
[2025-04-06 12:40:30] VERSION="7 (Core)"
[2025-04-06 12:40:30] ID="centos"
[2025-04-06 12:40:30] ID_LIKE="rhel fedora"
[2025-04-06 12:40:30] VERSION_ID="7"
[2025-04-06 12:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-06 12:40:30] ANSI_COLOR="0;31"
[2025-04-06 12:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-06 12:40:30] HOME_URL="https://www.centos.org/"
[2025-04-06 12:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-06 12:40:30] 
[2025-04-06 12:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-06 12:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-06 12:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-06 12:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-06 12:40:30] 
[2025-04-06 12:40:30] 2025-04-06 12:40:16,477 | INFO     | **************************************
[2025-04-06 12:40:30] 2025-04-06 12:40:16,978 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-04-06 12:40:30] 2025-04-06 12:40:16,984 | INFO     | sufficient remaining disk space (177604657152 B)
[2025-04-06 12:40:30] 2025-04-06 12:40:16,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-06 12:40:30] 2025-04-06 12:40:16,984 | INFO     | current server update state: UPDATING_FINAL
[2025-04-06 12:40:30] 2025-04-06 12:40:16,984 | INFO     | update_server=False
[2025-04-06 12:40:30] 2025-04-06 12:40:16,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-06 12:40:30] 2025-04-06 12:40:16,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-06 12:40:30] 2025-04-06 12:40:17,026 | INFO     | found 0 job(s) in 20 queues
[2025-04-06 12:40:30] 2025-04-06 12:40:17,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-06 12:40:30] 2025-04-06 12:40:17,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-06 12:40:30] 2025-04-06 12:40:17,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-06 12:40:30] 2025-04-06 12:40:17,538 | INFO     | aborting loop
[2025-04-06 12:40:30] 2025-04-06 12:40:17,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-06 12:40:30] 2025-04-06 12:40:17,986 | INFO     | [job] retrieve thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:17,986 | INFO     | [job] queue monitor thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,049 | INFO     | all data control threads have been joined
[2025-04-06 12:40:30] 2025-04-06 12:40:18,134 | INFO     | [job] create_data_payload thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,438 | INFO     | [job] validate thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,466 | INFO     | all payload control threads have been joined
[2025-04-06 12:40:30] 2025-04-06 12:40:18,474 | INFO     | [data] copytool_in thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,494 | INFO     | [payload] validate_pre thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,542 | INFO     | [job] job monitor thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,576 | INFO     | all job control threads have been joined
[2025-04-06 12:40:30] 2025-04-06 12:40:18,582 | INFO     | [payload] validate_post thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:18,722 | INFO     | [payload] execute_payloads thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,010 | INFO     | [payload] failed_post thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,053 | INFO     | [data] control thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-06 12:40:30] 2025-04-06 12:40:19,470 | INFO     | [payload] control thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,581 | INFO     | [job] control thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:19,826 | INFO     | [data] copytool_out thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:23,194 | INFO     | [data] queue_monitor thread has finished
[2025-04-06 12:40:30] 2025-04-06 12:40:24,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708429739840)>', '<ExcThread(monitor, started 140708111423232)>']
[2025-04-06 12:40:30] 2025-04-06 12:40:25,058 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-06 12:40:30] 2025-04-06 12:40:25,058 | INFO     | [monitor] control thread has ended
[2025-04-06 12:40:30] 2025-04-06 12:40:30,010 | INFO     | all workflow threads have been joined
[2025-04-06 12:40:30] 2025-04-06 12:40:30,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-06 12:40:30] 2025-04-06 12:40:30,010 | INFO     | traces error code: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:30,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-06 12:40:30] 2025-04-06 12:40:30,059 [wrapper] ==== pilot stdout END ====
[2025-04-06 12:40:30] 2025-04-06 12:40:30,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-06 12:40:30] 2025-04-06 12:40:30,071 [wrapper] pilotpid: 4041959
[2025-04-06 12:40:30] 2025-04-06 12:40:30,072 [wrapper] Pilot exit status: 0
[2025-04-06 12:40:30] 2025-04-06 12:40:30,091 [wrapper] pandaids: 6587182296
[2025-04-06 12:40:30] 2025-04-06 12:40:30,111 [wrapper] cleanup supervisor_pilot 4060888 4041960
[2025-04-06 12:40:30] 2025-04-06 12:40:30,115 [wrapper] Test setup, not cleaning
[2025-04-06 12:40:30] 2025-04-06 12:40:30,117 [wrapper] apfmon messages muted
[2025-04-06 12:40:30] 2025-04-06 12:40:30,119 [wrapper] ==== wrapper stdout END ====
[2025-04-06 12:40:30] 2025-04-06 12:40:30,121 [wrapper] ==== wrapper stderr END ====
[2025-04-06 12:40:30]  *** Error codes and diagnostics ***
[2025-04-06 12:40:30]     "exeErrorCode": 0,
[2025-04-06 12:40:30]     "exeErrorDiag": "",
[2025-04-06 12:40:30]     "pilotErrorCode": 0,
[2025-04-06 12:40:30]     "pilotErrorDiag": "",
[2025-04-06 12:40:30]  *** Listing of results directory ***
[2025-04-06 12:40:30] total 671560
[2025-04-06 12:40:30] -rw-r--r-- 1 boinc boinc    495897 Apr  4 05:12 pilot3.tar.gz
[2025-04-06 12:40:30] -rw-r--r-- 1 boinc boinc      5111 Apr  4 05:40 queuedata.json
[2025-04-06 12:40:30] -rwx------ 1 boinc boinc     37140 Apr  4 05:41 runpilot2-wrapper.sh
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc       100 Apr  6 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-06 12:40:30] -rwxr-xr-x 1 boinc boinc      7986 Apr  6 11:18 run_atlas
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc       105 Apr  6 11:18 job.xml
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc     17569 Apr  6 11:18 start_atlas.sh
[2025-04-06 12:40:30] drwxrwx--x 2 boinc boinc      4096 Apr  6 11:18 shared
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc    508890 Apr  6 11:18 input.tar.gz
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc      9677 Apr  6 11:18 init_data.xml
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc 360027239 Apr  6 11:18 EVNT.43634896._000806.pool.root.1
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc         0 Apr  6 11:18 boinc_lockfile
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc      2599 Apr  6 11:18 pandaJob.out
[2025-04-06 12:40:30] -rw------- 1 boinc boinc       424 Apr  6 11:18 setup.sh.local
[2025-04-06 12:40:30] -rw------- 1 boinc boinc    980067 Apr  6 11:18 agis_schedconf.cvmfs.json
[2025-04-06 12:40:30] -rw------- 1 boinc boinc   1603525 Apr  6 11:18 agis_ddmendpoints.agis.ALL.json
[2025-04-06 12:40:30] drwx------ 4 boinc boinc      4096 Apr  6 11:18 pilot3
[2025-04-06 12:40:30] -rw------- 1 boinc boinc        95 Apr  6 12:39 pilot_heartbeat.json
[2025-04-06 12:40:30] -rw------- 1 boinc boinc 322102034 Apr  6 12:39 HITS.43634898._021118.pool.root.1
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc       530 Apr  6 12:39 boinc_task_state.xml
[2025-04-06 12:40:30] -rw------- 1 boinc boinc      1015 Apr  6 12:39 memory_monitor_summary.json
[2025-04-06 12:40:30] -rw------- 1 boinc boinc    363851 Apr  6 12:40 log.43634898._021118.job.log.tgz.1
[2025-04-06 12:40:30] -rw------- 1 boinc boinc      7648 Apr  6 12:40 heartbeat.json
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc      8192 Apr  6 12:40 boinc_mmap_file
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc        27 Apr  6 12:40 wrapper_checkpoint.txt
[2025-04-06 12:40:30] -rw------- 1 boinc boinc      4377 Apr  6 12:40 pilotlog.txt
[2025-04-06 12:40:30] -rw------- 1 boinc boinc    485576 Apr  6 12:40 log.43634898._021118.job.log.1
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc       620 Apr  6 12:40 runtime_log
[2025-04-06 12:40:30] -rw------- 1 boinc boinc       357 Apr  6 12:40 output.list
[2025-04-06 12:40:30] -rw------- 1 boinc boinc    870400 Apr  6 12:40 result.tar.gz
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc     11399 Apr  6 12:40 runtime_log.err
[2025-04-06 12:40:30] -rw------- 1 boinc boinc       648 Apr  6 12:40 CicLDmCzoK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmojILDmN1NZqm.diag
[2025-04-06 12:40:30] -rw-rw-r-- 1 boinc boinc     21808 Apr  6 12:40 stderr.txt
[2025-04-06 12:40:30] HITS file was successfully produced:
[2025-04-06 12:40:30] -rw------- 1 boinc boinc 322102034 Apr  6 12:39 shared/HITS.pool.root.1
[2025-04-06 12:40:30]  *** Contents of shared directory: ***
[2025-04-06 12:40:30] total 667528
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc     17569 Apr  6 11:18 start_atlas.sh
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc    508890 Apr  6 11:18 input.tar.gz
[2025-04-06 12:40:30] -rw-r--r-- 2 boinc boinc 360027239 Apr  6 11:18 ATLAS.root_0
[2025-04-06 12:40:30] -rw------- 1 boinc boinc 322102034 Apr  6 12:39 HITS.pool.root.1
[2025-04-06 12:40:30] -rw------- 1 boinc boinc    870400 Apr  6 12:40 result.tar.gz
12:40:31 (4038250): run_atlas exited; CPU time 43054.104661
12:40:31 (4038250): called boinc_finish(0)

</stderr_txt>
]]>

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