Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:59:40 (3105812): wrapper (7.7.26015): starting
18:59:40 (3105812): wrapper: running run_atlas (--nthreads 6)
[2025-04-04 18:59:40] Arguments: --nthreads 6
[2025-04-04 18:59:40] Threads: 6
[2025-04-04 18:59:40] Checking for CVMFS
[2025-04-04 18:59:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 18:59:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 18:59:40] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 18:59:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 18:59:41] 2.11.5.0 2777923 5369 76880 144484 0 187 45301243 52428800 1858 130560 0 15109127 99.997 1400122 71 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-04-04 18:59:41] CVMFS is ok
[2025-04-04 18:59:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 18:59:41] Checking for apptainer binary...
[2025-04-04 18:59:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 18:59:41] Running /usr/bin/apptainer --version
[2025-04-04 18:59:41] apptainer version 1.3.5-1.el9
[2025-04-04 18:59:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 18:59:41] testio008
[2025-04-04 18:59:41] apptainer works
[2025-04-04 18:59:41] Set ATHENA_PROC_NUMBER=6
[2025-04-04 18:59:41] Set ATHENA_CORE_NUMBER=6
[2025-04-04 18:59:41] Starting ATLAS job with PandaID=6585410858
[2025-04-04 18:59:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 20:16:09]  *** The last 200 lines of the pilot log: ***
[2025-04-04 20:16:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-04 20:16:09]  is_altstaged=None
[2025-04-04 20:16:09]  is_tar=False
[2025-04-04 20:16:09]  lfn=log.44004367._010591.job.log.tgz.1
[2025-04-04 20:16:09]  mtime=0
[2025-04-04 20:16:09]  protocol_id=None
[2025-04-04 20:16:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-04 20:16:09]  replicas=None
[2025-04-04 20:16:09]  scope=mc23_13p6TeV
[2025-04-04 20:16:09]  status=None
[2025-04-04 20:16:09]  status_code=0
[2025-04-04 20:16:09]  storage_token=
[2025-04-04 20:16:09]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6585410858/log.44004367._010591.job.log.tgz.1
[2025-04-04 20:16:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/be/log.44004367._010591.job.log.tgz.1
[2025-04-04 20:16:09]  workdir=None
[2025-04-04 20:16:09] ]
[2025-04-04 20:16:09] 2025-04-04 11:15:53,102 | INFO     | transferring file log.44004367._010591.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6585410858/log.44004367._010591.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-04-04 20:16:09] 2025-04-04 11:15:53,102 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6585410858/log.44004367._010591.job.log.tgz.1 /var/lib/boinc/slots/1/log.44004367._010591.job
[2025-04-04 20:16:09] 2025-04-04 11:15:53,108 | INFO     | adding to output.list: log.44004367._010591.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/be/log.44004367._010591.job.log.tg
[2025-04-04 20:16:09] 2025-04-04 11:15:53,109 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-04 20:16:09] 2025-04-04 11:15:53,109 | INFO     | summary of transferred files:
[2025-04-04 20:16:09] 2025-04-04 11:15:53,109 | INFO     |  -- lfn=log.44004367._010591.job.log.tgz.1, status_code=0, status=transferred
[2025-04-04 20:16:09] 2025-04-04 11:15:53,109 | INFO     | stage-out finished correctly
[2025-04-04 20:16:09] 2025-04-04 11:15:53,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-04 20:16:09] 2025-04-04 11:15:53,539 | INFO     | PID=3109526 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-04 20:16:09] 2025-04-04 11:15:53,539 | INFO     | .. there are 3 such processes running
[2025-04-04 20:16:09] 2025-04-04 11:15:53,773 | INFO     | job 6585410858 has state=finished
[2025-04-04 20:16:09] 2025-04-04 11:15:53,773 | INFO     | preparing for final server update for job 6585410858 in state='finished'
[2025-04-04 20:16:09] 2025-04-04 11:15:53,773 | INFO     | this job has now completed (state=finished)
[2025-04-04 20:16:09] 2025-04-04 11:15:53,774 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-04 20:16:09] 2025-04-04 11:15:53,774 | INFO     | log transfer has been attempted: DONE
[2025-04-04 20:16:09] 2025-04-04 11:15:53,774 | INFO     | job 6585410858 has finished - writing final server update
[2025-04-04 20:16:09] 2025-04-04 11:15:53,774 | INFO     | total number of processed events: 400 (read)
[2025-04-04 20:16:09] 2025-04-04 11:15:53,774 | INFO     | executing command: lscpu
[2025-04-04 20:16:09] 2025-04-04 11:15:53,783 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-04 20:16:09] 2025-04-04 11:15:55,034 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-04 20:16:09] 2025-04-04 11:15:55,035 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6585410858/memory_monitor_summary.json (trf name=prmon)
[2025-04-04 20:16:09] 2025-04-04 11:15:55,035 | INFO     | extracted standard info from prmon json
[2025-04-04 20:16:09] 2025-04-04 11:15:55,035 | INFO     | extracted standard memory fields from prmon json
[2025-04-04 20:16:09] 2025-04-04 11:15:55,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-04 20:16:09] 2025-04-04 11:15:55,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | fitting pss+swap vs Time
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | sum of square deviations: 97479037.0
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | sum of deviations: 21252841121.5
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | mean x: 1743763154.5
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | mean y: 2279123.9852941176
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | -- intersect: -380181218955.8548
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | intersect: -380181218955.8548
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | chi2: 2.1687879918369446
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | -- intersect: -380181218955.8548
[2025-04-04 20:16:09] 2025-04-04 11:15:55,036 | INFO     | current memory leak: 218.02 B/s (using 68 data points, chi2=2.17)
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | ..............................
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . Timing measurements:
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . get job = 0 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . initial setup = 4 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . payload setup = 2 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . stage-in = 0 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . payload execution = 4545 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . stage-out = 0 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | . log creation = 0 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,037 | INFO     | ..............................
[2025-04-04 20:16:09] 2025-04-04 11:15:55,059 | INFO     | 
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | job summary report
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | --------------------------------------------------
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | PanDA job id: 6585410858
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | task id: 44004367
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | errors: (none)
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | pilot state: finished 
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | transexitcode: 0
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | exeerrorcode: 0
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | exeerrordiag: 
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | exitcode: 0
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | exitmsg: OK
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | cpuconsumptiontime: 21817 s
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | nevents: 400
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | neventsw: 0
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | pid: 3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | pgrp: 3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | corecount: 6
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | event service: False
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | sizes: {0: 2417326, 2: 2417532, 11: 2417560, 4550: 2443600, 4551: 2452596, 4553: 2452710}
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | --------------------------------------------------
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | 
[2025-04-04 20:16:09] 2025-04-04 11:15:55,060 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-04-04 20:16:09] 2025-04-04 11:15:55,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | job 6585410858 has completed (purged errors)
[2025-04-04 20:16:09] 2025-04-04 11:15:55,069 | INFO     | overall cleanup function is called
[2025-04-04 20:16:09] 2025-04-04 11:15:56,075 | INFO     | --- collectZombieJob: --- 10, [3116107]
[2025-04-04 20:16:09] 2025-04-04 11:15:56,076 | INFO     | zombie collector waiting for pid 3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:56,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 20:16:09] 2025-04-04 11:15:56,076 | INFO     | collected zombie processes
[2025-04-04 20:16:09] 2025-04-04 11:15:56,076 | INFO     | will attempt to kill all subprocesses of pid=3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:56,121 | INFO     | process IDs to be killed: [3116107] (in reverse order)
[2025-04-04 20:16:09] 2025-04-04 11:15:56,139 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 20:16:09] 2025-04-04 11:15:56,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 20:16:09] 2025-04-04 11:15:56,141 | INFO     | did not find any defunct processes belonging to 3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | did not find any defunct processes belonging to 3116107
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | ready for new job
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | **************************************
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | **************************************
[2025-04-04 20:16:09] 2025-04-04 11:15:56,143 | INFO     | 
[2025-04-04 20:16:09] 2025-04-04 11:15:56,144 | INFO     | architecture information:
[2025-04-04 20:16:09] 2025-04-04 11:15:56,144 | INFO     | executing command: cat /etc/os-release
[2025-04-04 20:16:09] 2025-04-04 11:15:56,149 | INFO     | cat /etc/os-release:
[2025-04-04 20:16:09] NAME="CentOS Linux"
[2025-04-04 20:16:09] VERSION="7 (Core)"
[2025-04-04 20:16:09] ID="centos"
[2025-04-04 20:16:09] ID_LIKE="rhel fedora"
[2025-04-04 20:16:09] VERSION_ID="7"
[2025-04-04 20:16:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 20:16:09] ANSI_COLOR="0;31"
[2025-04-04 20:16:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 20:16:09] HOME_URL="https://www.centos.org/"
[2025-04-04 20:16:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 20:16:09] 
[2025-04-04 20:16:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 20:16:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 20:16:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 20:16:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 20:16:09] 
[2025-04-04 20:16:09] 2025-04-04 11:15:56,149 | INFO     | **************************************
[2025-04-04 20:16:09] 2025-04-04 11:15:56,652 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | INFO     | sufficient remaining disk space (271075770368 B)
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | INFO     | update_server=False
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 20:16:09] 2025-04-04 11:15:56,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 20:16:09] 2025-04-04 11:15:56,735 | INFO     | all data control threads have been joined
[2025-04-04 20:16:09] 2025-04-04 11:15:57,066 | INFO     | job.realtimelogging is not enabled
[2025-04-04 20:16:09] 2025-04-04 11:15:57,516 | WARNING  | process 3116107 can no longer be monitored (due to stat problems) - aborting
[2025-04-04 20:16:09] 2025-04-04 11:15:57,534 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-04-04 20:16:09] 2025-04-04 11:15:57,550 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 20:16:09] 2025-04-04 11:15:57,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 20:16:09] 2025-04-04 11:15:57,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 20:16:09] 2025-04-04 11:15:57,556 | INFO     | number of running child processes to parent process 3116107: 1
[2025-04-04 20:16:09] 2025-04-04 11:15:57,556 | INFO     | maximum number of monitored processes: 6
[2025-04-04 20:16:09] 2025-04-04 11:15:57,556 | INFO     | aborting job monitoring since job object (job id=6585410858) has expired
[2025-04-04 20:16:09] 2025-04-04 11:15:57,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 20:16:09] 2025-04-04 11:15:57,556 | INFO     | will abort loop
[2025-04-04 20:16:09] 2025-04-04 11:15:57,628 | INFO     | all job control threads have been joined
[2025-04-04 20:16:09] 2025-04-04 11:15:57,663 | INFO     | [job] queue monitor thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:57,663 | INFO     | [job] retrieve thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:57,741 | INFO     | [data] control thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:57,767 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:57,870 | INFO     | all payload control threads have been joined
[2025-04-04 20:16:09] 2025-04-04 11:15:57,922 | INFO     | [job] validate thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,188 | INFO     | [payload] failed_post thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,270 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,387 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,423 | INFO     | [data] copytool_in thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,561 | INFO     | [job] job monitor thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,633 | INFO     | [job] control thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,663 | INFO     | [data] copytool_out thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,679 | INFO     | [payload] validate_post thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:58,875 | INFO     | [payload] control thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:15:59,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 20:16:09] 2025-04-04 11:16:03,169 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 20:16:09] 2025-04-04 11:16:04,476 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275132688192)>', '<ExcThread(monitor, started 140274495907584)>']
[2025-04-04 20:16:09] 2025-04-04 11:16:04,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 20:16:09] 2025-04-04 11:16:04,582 | INFO     | [monitor] control thread has ended
[2025-04-04 20:16:09] 2025-04-04 11:16:09,490 | INFO     | all workflow threads have been joined
[2025-04-04 20:16:09] 2025-04-04 11:16:09,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 20:16:09] 2025-04-04 11:16:09,491 | INFO     | traces error code: 0
[2025-04-04 20:16:09] 2025-04-04 11:16:09,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 20:16:09] 2025-04-04 11:16:09,536 [wrapper] ==== pilot stdout END ====
[2025-04-04 20:16:09] 2025-04-04 11:16:09,537 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 20:16:09] 2025-04-04 11:16:09,538 [wrapper] pilotpid: 3109526
[2025-04-04 20:16:09] 2025-04-04 11:16:09,539 [wrapper] Pilot exit status: 0
[2025-04-04 20:16:09] 2025-04-04 11:16:09,542 [wrapper] pandaids: 6585410858
[2025-04-04 20:16:09] 2025-04-04 11:16:09,552 [wrapper] cleanup supervisor_pilot 3147644 3109527
[2025-04-04 20:16:09] 2025-04-04 11:16:09,553 [wrapper] Test setup, not cleaning
[2025-04-04 20:16:09] 2025-04-04 11:16:09,554 [wrapper] apfmon messages muted
[2025-04-04 20:16:09] 2025-04-04 11:16:09,555 [wrapper] ==== wrapper stdout END ====
[2025-04-04 20:16:09] 2025-04-04 11:16:09,556 [wrapper] ==== wrapper stderr END ====
[2025-04-04 20:16:09]  *** Error codes and diagnostics ***
[2025-04-04 20:16:09]     "exeErrorCode": 0,
[2025-04-04 20:16:09]     "exeErrorDiag": "",
[2025-04-04 20:16:09]     "pilotErrorCode": 0,
[2025-04-04 20:16:09]     "pilotErrorDiag": "",
[2025-04-04 20:16:09]  *** Listing of results directory ***
[2025-04-04 20:16:09] total 415296
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc    495897 Apr  3 23:28 pilot3.tar.gz
[2025-04-04 20:16:09] -rwx------. 1 boinc boinc     37140 Apr  4 00:20 runpilot2-wrapper.sh
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc      5111 Apr  4 00:20 queuedata.json
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc       100 Apr  4 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 20:16:09] -rwxr-xr-x. 1 boinc boinc      7986 Apr  4 18:59 run_atlas
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc       105 Apr  4 18:59 job.xml
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc     17569 Apr  4 18:59 start_atlas.sh
[2025-04-04 20:16:09] drwxrwx--x. 2 boinc boinc        68 Apr  4 18:59 shared
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc    508874 Apr  4 18:59 input.tar.gz
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc 223043433 Apr  4 18:59 EVNT.44004365._000424.pool.root.1
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc         0 Apr  4 18:59 boinc_lockfile
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc      2550 Apr  4 18:59 pandaJob.out
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc       424 Apr  4 18:59 setup.sh.local
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc    979626 Apr  4 18:59 agis_schedconf.cvmfs.json
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc   1603525 Apr  4 18:59 agis_ddmendpoints.agis.ALL.json
[2025-04-04 20:16:09] drwx------. 4 boinc boinc      4096 Apr  4 18:59 pilot3
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc      9515 Apr  4 19:23 init_data.xml
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc        95 Apr  4 20:15 pilot_heartbeat.json
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc 196958493 Apr  4 20:15 HITS.44004367._010591.pool.root.1
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc        27 Apr  4 20:15 wrapper_checkpoint.txt
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc      8192 Apr  4 20:15 boinc_mmap_file
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc       529 Apr  4 20:15 boinc_task_state.xml
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc      1021 Apr  4 20:15 memory_monitor_summary.json
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc    268909 Apr  4 20:15 log.44004367._010591.job.log.tgz.1
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc      7662 Apr  4 20:15 heartbeat.json
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc      4947 Apr  4 20:16 pilotlog.txt
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc    447929 Apr  4 20:16 log.44004367._010591.job.log.1
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc       357 Apr  4 20:16 output.list
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc       620 Apr  4 20:16 runtime_log
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc    737280 Apr  4 20:16 result.tar.gz
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc       642 Apr  4 20:16 SEiNDmDYbK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmN4sKDmYgUAln.diag
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc     10971 Apr  4 20:16 runtime_log.err
[2025-04-04 20:16:09] -rw-r--r--. 1 boinc boinc     21063 Apr  4 20:16 stderr.txt
[2025-04-04 20:16:09] HITS file was successfully produced:
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc 196958493 Apr  4 20:15 shared/HITS.pool.root.1
[2025-04-04 20:16:09]  *** Contents of shared directory: ***
[2025-04-04 20:16:09] total 411400
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc     17569 Apr  4 18:59 start_atlas.sh
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc    508874 Apr  4 18:59 input.tar.gz
[2025-04-04 20:16:09] -rw-r--r--. 2 boinc boinc 223043433 Apr  4 18:59 ATLAS.root_0
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc 196958493 Apr  4 20:15 HITS.pool.root.1
[2025-04-04 20:16:09] -rw-------. 1 boinc boinc    737280 Apr  4 20:16 result.tar.gz
20:16:11 (3105812): run_atlas exited; CPU time 21842.496955
20:16:11 (3105812): called boinc_finish(0)

</stderr_txt>
]]>

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