Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:55:12 (3911698): wrapper (7.7.26015): starting
04:55:12 (3911698): wrapper: running run_atlas (--nthreads 8)
[2025-04-04 04:55:12] Arguments: --nthreads 8
[2025-04-04 04:55:12] Threads: 8
[2025-04-04 04:55:12] Checking for CVMFS
[2025-04-04 04:55:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 04:55:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 04:55:13] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 04:55:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 04:55:15] 2.12.6.0 2420954 2518 208132 144482 4 517 28247483 32935937 23719 16776704 0 13918320 99.496 15501959 20557 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-04 04:55:15] CVMFS is ok
[2025-04-04 04:55:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-04 04:55:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-04 04:55:15] Further information can be found at the LHC@home message board.
[2025-04-04 04:55:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 04:55:15] Checking for apptainer binary...
[2025-04-04 04:55:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 04:55:15] Running /usr/bin/apptainer --version
[2025-04-04 04:55:15] apptainer version 1.4.0-1.el9
[2025-04-04 04:55:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 04:55:16] c6-12-27-4.aglt2.org
[2025-04-04 04:55:16] apptainer works
[2025-04-04 04:55:16] Set ATHENA_PROC_NUMBER=8
[2025-04-04 04:55:16] Set ATHENA_CORE_NUMBER=8
[2025-04-04 04:55:17] Starting ATLAS job with PandaID=6586697646
[2025-04-04 04:55:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 11:42:27]  *** The last 200 lines of the pilot log: ***
[2025-04-04 11:42:27] 2025-04-04 15:42:12,613 | INFO     | sum of deviations: 287783489890.4207
[2025-04-04 11:42:27] 2025-04-04 15:42:12,613 | INFO     | mean x: 1743769087.9770408
[2025-04-04 11:42:27] 2025-04-04 15:42:12,613 | INFO     | mean y: 2413536.3801020407
[2025-04-04 11:42:27] 2025-04-04 15:42:12,613 | INFO     | -- intersect: -26864870188.5975
[2025-04-04 11:42:27] 2025-04-04 15:42:12,613 | INFO     | intersect: -26864870188.5975
[2025-04-04 11:42:27] 2025-04-04 15:42:12,614 | INFO     | chi2: 5.546764337918854
[2025-04-04 11:42:27] 2025-04-04 15:42:12,614 | INFO     | current chi2=5.546764337918854 (change=12.502374787913647 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,614 | INFO     | right removable region: 391
[2025-04-04 11:42:27] 2025-04-04 15:42:12,614 | INFO     | sum of square deviations: 18677940243.836678
[2025-04-04 11:42:27] 2025-04-04 15:42:12,617 | INFO     | sum of deviations: 161152996365.0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,617 | INFO     | mean x: 1743769392.9795918
[2025-04-04 11:42:27] 2025-04-04 15:42:12,618 | INFO     | mean y: 2430611.25
[2025-04-04 11:42:27] 2025-04-04 15:42:12,618 | INFO     | -- intersect: -15042786312.011492
[2025-04-04 11:42:27] 2025-04-04 15:42:12,618 | INFO     | intersect: -15042786312.011492
[2025-04-04 11:42:27] 2025-04-04 15:42:12,618 | INFO     | chi2: 3.5538879662992238
[2025-04-04 11:42:27] 2025-04-04 15:42:12,618 | INFO     | current chi2=3.5538879662992238 (change=43.93907179448258 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,619 | INFO     | sum of square deviations: 17972232462.671898
[2025-04-04 11:42:27] 2025-04-04 15:42:12,621 | INFO     | sum of deviations: 92251252040.18866
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | mean x: 1743769545.485788
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | mean y: 2445492.3979328168
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | -- intersect: -8948302511.4869
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | intersect: -8948302511.4869
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | chi2: 2.429067045445233
[2025-04-04 11:42:27] 2025-04-04 15:42:12,622 | INFO     | current chi2=2.429067045445233 (change=31.65043275197283 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,623 | INFO     | sum of square deviations: 17284571988.934586
[2025-04-04 11:42:27] 2025-04-04 15:42:12,625 | INFO     | sum of deviations: 27937414163.03664
[2025-04-04 11:42:27] 2025-04-04 15:42:12,625 | INFO     | mean x: 1743769697.986911
[2025-04-04 11:42:27] 2025-04-04 15:42:12,625 | INFO     | mean y: 2459755.607329843
[2025-04-04 11:42:27] 2025-04-04 15:42:12,625 | INFO     | -- intersect: -2816031572.3122406
[2025-04-04 11:42:27] 2025-04-04 15:42:12,626 | INFO     | intersect: -2816031572.3122406
[2025-04-04 11:42:27] 2025-04-04 15:42:12,626 | INFO     | chi2: 1.4415763499987073
[2025-04-04 11:42:27] 2025-04-04 15:42:12,626 | INFO     | current chi2=1.4415763499987073 (change=40.65308519574127 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,626 | INFO     | sum of square deviations: 16614632930.23348
[2025-04-04 11:42:27] 2025-04-04 15:42:12,629 | INFO     | sum of deviations: -10954711556.639252
[2025-04-04 11:42:27] 2025-04-04 15:42:12,629 | INFO     | mean x: 1743769850.4933686
[2025-04-04 11:42:27] 2025-04-04 15:42:12,629 | INFO     | mean y: 2468609.9442970823
[2025-04-04 11:42:27] 2025-04-04 15:42:12,629 | INFO     | -- intersect: 1152207867.7137651
[2025-04-04 11:42:27] 2025-04-04 15:42:12,629 | INFO     | intersect: 1152207867.7137651
[2025-04-04 11:42:27] 2025-04-04 15:42:12,630 | INFO     | chi2: 1.053387367390949
[2025-04-04 11:42:27] 2025-04-04 15:42:12,630 | INFO     | current chi2=1.053387367390949 (change=26.92809039272227 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,630 | INFO     | sum of square deviations: 15962229084.0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | sum of deviations: -28419824009.000004
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | mean x: 1743770003.0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | mean y: 2472692.1532258065
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | -- intersect: 3107154145.8925605
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | intersect: 3107154145.8925605
[2025-04-04 11:42:27] 2025-04-04 15:42:12,633 | INFO     | chi2: 0.9738368975211849
[2025-04-04 11:42:27] 2025-04-04 15:42:12,634 | INFO     | current chi2=0.9738368975211849 (change=7.551872400634195 %)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,634 | INFO     | left removable region: 50
[2025-04-04 11:42:27] 2025-04-04 15:42:12,634 | INFO     | sum of square deviations: 12294840695.161245
[2025-04-04 11:42:27] 2025-04-04 15:42:12,636 | INFO     | sum of deviations: -8855656581.677399
[2025-04-04 11:42:27] 2025-04-04 15:42:12,636 | INFO     | mean x: 1743770582.516129
[2025-04-04 11:42:27] 2025-04-04 15:42:12,636 | INFO     | mean y: 2479630.57771261
[2025-04-04 11:42:27] 2025-04-04 15:42:12,636 | INFO     | -- intersect: 1258472596.9666004
[2025-04-04 11:42:27] 2025-04-04 15:42:12,636 | INFO     | intersect: 1258472596.9666004
[2025-04-04 11:42:27] 2025-04-04 15:42:12,637 | INFO     | chi2: 0.06442309751691494
[2025-04-04 11:42:27] 2025-04-04 15:42:12,637 | INFO     | -- intersect: 1258472596.9666004
[2025-04-04 11:42:27] 2025-04-04 15:42:12,637 | INFO     | current memory leak: -0.72 B/s (using 341 data points, chi2=0.06)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,638 | INFO     | ..............................
[2025-04-04 11:42:27] 2025-04-04 15:42:12,638 | INFO     | . Timing measurements:
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . get job = 0 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . initial setup = 4 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . payload setup = 53 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . stage-in = 0 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . payload execution = 24193 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . stage-out = 2 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | . log creation = 0 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,639 | INFO     | ..............................
[2025-04-04 11:42:27] 2025-04-04 15:42:12,749 | INFO     | 
[2025-04-04 11:42:27] 2025-04-04 15:42:12,749 | INFO     | job summary report
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | --------------------------------------------------
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | PanDA job id: 6586697646
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | task id: 43634898
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | errors: (none)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | pilot state: finished 
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | transexitcode: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | exeerrorcode: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | exeerrordiag: 
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | exitcode: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | exitmsg: OK
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | cpuconsumptiontime: 87642 s
[2025-04-04 11:42:27] 2025-04-04 15:42:12,750 | INFO     | nevents: 400
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | neventsw: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | pid: 3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | pgrp: 3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | corecount: 8
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | event service: False
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | sizes: {0: 2416521, 1: 2417122, 2: 2417234, 3: 2417234, 4: 2417461, 16: 2417461, 27: 2417617, 38: 2417645, 44: 2417879, 49: 2417907, 24250: 2452736, 24253: 2461677
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | --------------------------------------------------
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | 
[2025-04-04 11:42:27] 2025-04-04 15:42:12,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-04 11:42:27] 2025-04-04 15:42:12,782 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 11:42:27] 2025-04-04 15:42:12,784 | INFO     | job 6586697646 has completed (purged errors)
[2025-04-04 11:42:27] 2025-04-04 15:42:12,785 | INFO     | overall cleanup function is called
[2025-04-04 11:42:27] 2025-04-04 15:42:13,793 | INFO     | --- collectZombieJob: --- 10, [3929454]
[2025-04-04 11:42:27] 2025-04-04 15:42:13,794 | INFO     | zombie collector waiting for pid 3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:13,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 11:42:27] 2025-04-04 15:42:13,794 | INFO     | collected zombie processes
[2025-04-04 11:42:27] 2025-04-04 15:42:13,795 | INFO     | will attempt to kill all subprocesses of pid=3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:14,336 | INFO     | process IDs to be killed: [3929454] (in reverse order)
[2025-04-04 11:42:27] 2025-04-04 15:42:14,543 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 11:42:27] 2025-04-04 15:42:14,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 11:42:27] 2025-04-04 15:42:14,564 | INFO     | did not find any defunct processes belonging to 3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:14,584 | INFO     | did not find any defunct processes belonging to 3929454
[2025-04-04 11:42:27] 2025-04-04 15:42:14,584 | INFO     | ready for new job
[2025-04-04 11:42:27] 2025-04-04 15:42:14,585 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 11:42:27] 2025-04-04 15:42:14,587 | INFO     | **************************************
[2025-04-04 11:42:27] 2025-04-04 15:42:14,587 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 11:42:27] 2025-04-04 15:42:14,587 | INFO     | **************************************
[2025-04-04 11:42:27] 2025-04-04 15:42:14,587 | INFO     | 
[2025-04-04 11:42:27] 2025-04-04 15:42:14,606 | INFO     | architecture information:
[2025-04-04 11:42:27] 2025-04-04 15:42:14,607 | INFO     | executing command: cat /etc/os-release
[2025-04-04 11:42:27] 2025-04-04 15:42:14,630 | INFO     | cat /etc/os-release:
[2025-04-04 11:42:27] NAME="CentOS Linux"
[2025-04-04 11:42:27] VERSION="7 (Core)"
[2025-04-04 11:42:27] ID="centos"
[2025-04-04 11:42:27] ID_LIKE="rhel fedora"
[2025-04-04 11:42:27] VERSION_ID="7"
[2025-04-04 11:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 11:42:27] ANSI_COLOR="0;31"
[2025-04-04 11:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 11:42:27] HOME_URL="https://www.centos.org/"
[2025-04-04 11:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 11:42:27] 
[2025-04-04 11:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 11:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 11:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 11:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 11:42:27] 
[2025-04-04 11:42:27] 2025-04-04 15:42:14,631 | INFO     | **************************************
[2025-04-04 11:42:27] 2025-04-04 15:42:15,134 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-04 11:42:27] 2025-04-04 15:42:15,169 | INFO     | sufficient remaining disk space (88819630080 B)
[2025-04-04 11:42:27] 2025-04-04 15:42:15,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 11:42:27] 2025-04-04 15:42:15,170 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 11:42:27] 2025-04-04 15:42:15,170 | INFO     | update_server=False
[2025-04-04 11:42:27] 2025-04-04 15:42:15,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 11:42:27] 2025-04-04 15:42:15,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 11:42:27] 2025-04-04 15:42:15,173 | INFO     | aborting loop
[2025-04-04 11:42:27] 2025-04-04 15:42:15,225 | INFO     | all data control threads have been joined
[2025-04-04 11:42:27] 2025-04-04 15:42:15,409 | INFO     | all payload control threads have been joined
[2025-04-04 11:42:27] 2025-04-04 15:42:15,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 11:42:27] 2025-04-04 15:42:15,560 | INFO     | all job control threads have been joined
[2025-04-04 11:42:27] 2025-04-04 15:42:15,773 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 11:42:27] 2025-04-04 15:42:15,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 11:42:27] 2025-04-04 15:42:15,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 11:42:27] 2025-04-04 15:42:16,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 11:42:27] 2025-04-04 15:42:16,175 | INFO     | [job] retrieve thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,179 | INFO     | [job] job monitor thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,231 | INFO     | [data] control thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,368 | INFO     | [job] validate thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,415 | INFO     | [payload] control thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,436 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:16,566 | INFO     | [job] control thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,127 | INFO     | [data] copytool_in thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,221 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,399 | INFO     | [payload] failed_post thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,425 | INFO     | [data] copytool_out thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,435 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,543 | INFO     | [payload] validate_post thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:17,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 11:42:27] 2025-04-04 15:42:18,779 | INFO     | [job] queue monitor thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:20,132 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 11:42:27] 2025-04-04 15:42:21,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139910872438592)>', '<ExcThread(monitor, started 139910128314112)>']
[2025-04-04 11:42:27] 2025-04-04 15:42:21,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 11:42:27] 2025-04-04 15:42:21,809 | INFO     | [monitor] control thread has ended
[2025-04-04 11:42:27] 2025-04-04 15:42:26,510 | INFO     | all workflow threads have been joined
[2025-04-04 11:42:27] 2025-04-04 15:42:26,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 11:42:27] 2025-04-04 15:42:26,511 | INFO     | traces error code: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:26,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 11:42:27] 2025-04-04 15:42:26,796 [wrapper] ==== pilot stdout END ====
[2025-04-04 11:42:27] 2025-04-04 15:42:26,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 11:42:27] 2025-04-04 15:42:26,828 [wrapper] pilotpid: 3919930
[2025-04-04 11:42:27] 2025-04-04 15:42:26,835 [wrapper] Pilot exit status: 0
[2025-04-04 11:42:27] 2025-04-04 15:42:26,852 [wrapper] pandaids: 6586697646
[2025-04-04 11:42:27] 2025-04-04 15:42:26,953 [wrapper] cleanup supervisor_pilot 1724712 3919931
[2025-04-04 11:42:27] 2025-04-04 15:42:26,958 [wrapper] Test setup, not cleaning
[2025-04-04 11:42:27] 2025-04-04 15:42:26,961 [wrapper] apfmon messages muted
[2025-04-04 11:42:27] 2025-04-04 15:42:26,964 [wrapper] ==== wrapper stdout END ====
[2025-04-04 11:42:27] 2025-04-04 15:42:26,969 [wrapper] ==== wrapper stderr END ====
[2025-04-04 11:42:27]  *** Error codes and diagnostics ***
[2025-04-04 11:42:27]     "exeErrorCode": 0,
[2025-04-04 11:42:27]     "exeErrorDiag": "",
[2025-04-04 11:42:27]     "pilotErrorCode": 0,
[2025-04-04 11:42:27]     "pilotErrorDiag": "",
[2025-04-04 11:42:27]  *** Listing of results directory ***
[2025-04-04 11:42:27] total 670728
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas    495897 Apr  3 22:31 pilot3.tar.gz
[2025-04-04 11:42:27] -rwx------. 1 boincer umatlas     37140 Apr  3 22:46 runpilot2-wrapper.sh
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas      5111 Apr  3 22:46 queuedata.json
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas       100 Apr  4 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 11:42:27] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  4 04:55 run_atlas
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas       105 Apr  4 04:55 job.xml
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas 358894046 Apr  4 04:55 EVNT.43634896._000765.pool.root.1
[2025-04-04 11:42:27] drwxrwx--x. 2 boincer umatlas      4096 Apr  4 04:55 shared
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas    508882 Apr  4 04:55 input.tar.gz
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 04:55 start_atlas.sh
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas         0 Apr  4 04:55 boinc_lockfile
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas      2599 Apr  4 04:55 pandaJob.out
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas       467 Apr  4 04:55 setup.sh.local
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas    979986 Apr  4 04:56 agis_schedconf.cvmfs.json
[2025-04-04 11:42:27] drwx------. 4 boincer umatlas      4096 Apr  4 04:56 pilot3
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas      6859 Apr  4 11:39 init_data.xml
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas 319436828 Apr  4 11:41 HITS.43634898._020041.pool.root.1
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas       532 Apr  4 11:41 boinc_task_state.xml
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas        95 Apr  4 11:41 pilot_heartbeat.json
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas      1056 Apr  4 11:41 memory_monitor_summary.json
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas   1603525 Apr  4 11:42 agis_ddmendpoints.agis.ALL.json
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas    475403 Apr  4 11:42 log.43634898._020041.job.log.tgz.1
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas      7751 Apr  4 11:42 heartbeat.json
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas        28 Apr  4 11:42 wrapper_checkpoint.txt
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas      8192 Apr  4 11:42 boinc_mmap_file
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas      4353 Apr  4 11:42 pilotlog.txt
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas   1862938 Apr  4 11:42 log.43634898._020041.job.log.1
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas       357 Apr  4 11:42 output.list
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas       620 Apr  4 11:42 runtime_log
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas   2355200 Apr  4 11:42 result.tar.gz
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas     11429 Apr  4 11:42 runtime_log.err
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas       666 Apr  4 11:42 9uLKDmaFmK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmKWILDmjlitKm.diag
[2025-04-04 11:42:27] -rw-r--r--. 1 boincer umatlas      2145 Apr  4 11:42 stderr.txt
[2025-04-04 11:42:27] HITS file was successfully produced:
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas 319436828 Apr  4 11:41 shared/HITS.pool.root.1
[2025-04-04 11:42:27]  *** Contents of shared directory: ***
[2025-04-04 11:42:27] total 665264
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas 358894046 Apr  4 04:55 ATLAS.root_0
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas    508882 Apr  4 04:55 input.tar.gz
[2025-04-04 11:42:27] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 04:55 start_atlas.sh
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas 319436828 Apr  4 11:41 HITS.pool.root.1
[2025-04-04 11:42:27] -rw-------. 1 boincer umatlas   2355200 Apr  4 11:42 result.tar.gz
11:42:29 (3911698): run_atlas exited; CPU time 88849.495917
11:42:29 (3911698): called boinc_finish(0)

</stderr_txt>
]]>

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