Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:26:30 (2937704): wrapper (7.7.26015): starting
15:26:30 (2937704): wrapper: running run_atlas (--nthreads 6)
[2025-04-04 15:26:30] Arguments: --nthreads 6
[2025-04-04 15:26:30] Threads: 6
[2025-04-04 15:26:30] Checking for CVMFS
[2025-04-04 15:26:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 15:26:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 15:26:30] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 15:26:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 15:26:30] 2.11.5.0 2777923 5156 77468 144478 0 187 45136155 52428801 1804 130560 0 14686686 99.997 1330983 73 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-04-04 15:26:30] CVMFS is ok
[2025-04-04 15:26:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 15:26:30] Checking for apptainer binary...
[2025-04-04 15:26:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 15:26:30] Running /usr/bin/apptainer --version
[2025-04-04 15:26:30] apptainer version 1.3.5-1.el9
[2025-04-04 15:26:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 15:26:30] testio008
[2025-04-04 15:26:30] apptainer works
[2025-04-04 15:26:30] Set ATHENA_PROC_NUMBER=6
[2025-04-04 15:26:30] Set ATHENA_CORE_NUMBER=6
[2025-04-04 15:26:30] Starting ATLAS job with PandaID=6586534053
[2025-04-04 15:26:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 16:43:49]  *** The last 200 lines of the pilot log: ***
[2025-04-04 16:43:49] 2025-04-04 07:42:45,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:42:47,848 | INFO     | monitor loop #349: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:42:47,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:42:50,351 | INFO     | monitor loop #350: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:42:50,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:42:52,854 | INFO     | monitor loop #351: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:42:52,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:42:55,357 | INFO     | monitor loop #352: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:42:55,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:42:57,860 | INFO     | monitor loop #353: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:42:57,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:00,363 | INFO     | monitor loop #354: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:00,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:02,864 | INFO     | monitor loop #355: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:02,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:05,126 | INFO     | PID=2941463 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-04 16:43:49] 2025-04-04 07:43:05,127 | INFO     | .. there are 3 such processes running
[2025-04-04 16:43:49] 2025-04-04 07:43:05,367 | INFO     | monitor loop #356: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:05,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:07,870 | INFO     | monitor loop #357: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:07,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:10,373 | INFO     | monitor loop #358: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:10,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:12,140 | INFO     | 4598s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-04 16:43:49] 2025-04-04 07:43:12,876 | INFO     | monitor loop #359: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:12,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:15,379 | INFO     | monitor loop #360: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:15,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:17,882 | INFO     | monitor loop #361: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:17,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:20,383 | INFO     | monitor loop #362: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:20,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:22,886 | INFO     | monitor loop #363: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:22,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:25,389 | INFO     | monitor loop #364: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:25,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:27,247 | INFO     | PID=2941463 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-04 16:43:49] 2025-04-04 07:43:27,247 | INFO     | .. there are 3 such processes running
[2025-04-04 16:43:49] 2025-04-04 07:43:27,892 | INFO     | monitor loop #365: job 0:6586534053 is in state 'finished'
[2025-04-04 16:43:49] 2025-04-04 07:43:27,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,378 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6586534053/memory_monitor_summary.json (trf name=prmon)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | INFO     | extracted standard info from prmon json
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | INFO     | extracted standard memory fields from prmon json
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 16:43:49] 2025-04-04 07:43:30,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | fitting pss+swap vs Time
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | sum of square deviations: 93240818.0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | sum of deviations: 19853548244.0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | mean x: 1743750331.0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | mean y: 2283465.686567164
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | -- intersect: -371290376386.3481
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | intersect: -371290376386.3481
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | chi2: 2.120013868569497
[2025-04-04 16:43:49] 2025-04-04 07:43:30,380 | INFO     | -- intersect: -371290376386.3481
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | current memory leak: 212.93 B/s (using 67 data points, chi2=2.12)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | ..............................
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . Timing measurements:
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . get job = 0 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . initial setup = 4 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . payload setup = 1 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . stage-in = 0 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . payload execution = 4492 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . stage-out = 0 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | . log creation = 0 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,381 | INFO     | ..............................
[2025-04-04 16:43:49] 2025-04-04 07:43:30,767 | INFO     | 
[2025-04-04 16:43:49] 2025-04-04 07:43:30,767 | INFO     | job summary report
[2025-04-04 16:43:49] 2025-04-04 07:43:30,767 | INFO     | --------------------------------------------------
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | PanDA job id: 6586534053
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | task id: 44004367
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | errors: (none)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | pilot state: finished 
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | transexitcode: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | exeerrorcode: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | exeerrordiag: 
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | exitcode: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | exitmsg: OK
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | cpuconsumptiontime: 21298 s
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | nevents: 400
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | neventsw: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | pid: 2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | pgrp: 2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | corecount: 6
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | event service: False
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | sizes: {0: 2417155, 1: 2417354, 2: 2417560, 11: 2417588, 4498: 2443595, 4499: 2452536, 4502: 2452720, 4601: 2452890}
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | --------------------------------------------------
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | 
[2025-04-04 16:43:49] 2025-04-04 07:43:30,768 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-04-04 16:43:49] 2025-04-04 07:43:30,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 16:43:49] 2025-04-04 07:43:30,778 | INFO     | job 6586534053 has completed (purged errors)
[2025-04-04 16:43:49] 2025-04-04 07:43:30,779 | INFO     | overall cleanup function is called
[2025-04-04 16:43:49] 2025-04-04 07:43:31,781 | INFO     | --- collectZombieJob: --- 10, [2948102]
[2025-04-04 16:43:49] 2025-04-04 07:43:31,781 | INFO     | zombie collector waiting for pid 2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:31,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 16:43:49] 2025-04-04 07:43:31,781 | INFO     | collected zombie processes
[2025-04-04 16:43:49] 2025-04-04 07:43:31,781 | INFO     | will attempt to kill all subprocesses of pid=2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:31,837 | INFO     | process IDs to be killed: [2948102] (in reverse order)
[2025-04-04 16:43:49] 2025-04-04 07:43:31,859 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 16:43:49] 2025-04-04 07:43:31,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 16:43:49] 2025-04-04 07:43:31,862 | INFO     | did not find any defunct processes belonging to 2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:31,864 | INFO     | did not find any defunct processes belonging to 2948102
[2025-04-04 16:43:49] 2025-04-04 07:43:31,864 | INFO     | ready for new job
[2025-04-04 16:43:49] 2025-04-04 07:43:31,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 16:43:49] 2025-04-04 07:43:31,865 | INFO     | **************************************
[2025-04-04 16:43:49] 2025-04-04 07:43:31,865 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 16:43:49] 2025-04-04 07:43:31,865 | INFO     | **************************************
[2025-04-04 16:43:49] 2025-04-04 07:43:31,865 | INFO     | 
[2025-04-04 16:43:49] 2025-04-04 07:43:31,866 | INFO     | architecture information:
[2025-04-04 16:43:49] 2025-04-04 07:43:31,866 | INFO     | executing command: cat /etc/os-release
[2025-04-04 16:43:49] 2025-04-04 07:43:31,871 | INFO     | cat /etc/os-release:
[2025-04-04 16:43:49] NAME="CentOS Linux"
[2025-04-04 16:43:49] VERSION="7 (Core)"
[2025-04-04 16:43:49] ID="centos"
[2025-04-04 16:43:49] ID_LIKE="rhel fedora"
[2025-04-04 16:43:49] VERSION_ID="7"
[2025-04-04 16:43:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 16:43:49] ANSI_COLOR="0;31"
[2025-04-04 16:43:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 16:43:49] HOME_URL="https://www.centos.org/"
[2025-04-04 16:43:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 16:43:49] 
[2025-04-04 16:43:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 16:43:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 16:43:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 16:43:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 16:43:49] 
[2025-04-04 16:43:49] 2025-04-04 07:43:31,872 | INFO     | **************************************
[2025-04-04 16:43:49] 2025-04-04 07:43:32,374 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-04-04 16:43:49] 2025-04-04 07:43:32,381 | INFO     | sufficient remaining disk space (271632564224 B)
[2025-04-04 16:43:49] 2025-04-04 07:43:32,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 16:43:49] 2025-04-04 07:43:32,381 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 16:43:49] 2025-04-04 07:43:32,381 | INFO     | update_server=False
[2025-04-04 16:43:49] 2025-04-04 07:43:32,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 16:43:49] 2025-04-04 07:43:32,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 16:43:49] 2025-04-04 07:43:32,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 16:43:49] 2025-04-04 07:43:32,382 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 16:43:49] 2025-04-04 07:43:32,382 | INFO     | aborting loop
[2025-04-04 16:43:49] 2025-04-04 07:43:32,516 | INFO     | all payload control threads have been joined
[2025-04-04 16:43:49] 2025-04-04 07:43:32,781 | INFO     | all data control threads have been joined
[2025-04-04 16:43:49] 2025-04-04 07:43:33,046 | INFO     | all job control threads have been joined
[2025-04-04 16:43:49] 2025-04-04 07:43:33,261 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 16:43:49] 2025-04-04 07:43:33,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 16:43:49] 2025-04-04 07:43:33,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 16:43:49] 2025-04-04 07:43:33,387 | INFO     | [job] retrieve thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,387 | INFO     | [job] queue monitor thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,387 | INFO     | [job] job monitor thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,418 | INFO     | [data] copytool_in thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,448 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,522 | INFO     | [payload] control thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,524 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 16:43:49] 2025-04-04 07:43:33,772 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:33,786 | INFO     | [data] control thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:34,051 | INFO     | [job] control thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:34,426 | INFO     | [payload] validate_post thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:34,778 | INFO     | [payload] failed_post thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:34,889 | INFO     | [job] validate thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:35,609 | INFO     | [data] copytool_out thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:36,384 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:42,651 | INFO     | job.realtimelogging is not enabled
[2025-04-04 16:43:49] 2025-04-04 07:43:43,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 16:43:49] 2025-04-04 07:43:44,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641250907968)>', '<ExcThread(monitor, started 140640742516480)>']
[2025-04-04 16:43:49] 2025-04-04 07:43:45,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 16:43:49] 2025-04-04 07:43:45,315 | INFO     | [monitor] control thread has ended
[2025-04-04 16:43:49] 2025-04-04 07:43:49,441 | INFO     | all workflow threads have been joined
[2025-04-04 16:43:49] 2025-04-04 07:43:49,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 16:43:49] 2025-04-04 07:43:49,442 | INFO     | traces error code: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:49,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 16:43:49] 2025-04-04 07:43:49,490 [wrapper] ==== pilot stdout END ====
[2025-04-04 16:43:49] 2025-04-04 07:43:49,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 16:43:49] 2025-04-04 07:43:49,492 [wrapper] pilotpid: 2941463
[2025-04-04 16:43:49] 2025-04-04 07:43:49,493 [wrapper] Pilot exit status: 0
[2025-04-04 16:43:49] 2025-04-04 07:43:49,497 [wrapper] pandaids: 6586534053
[2025-04-04 16:43:49] 2025-04-04 07:43:49,510 [wrapper] cleanup supervisor_pilot 2994847 2941464
[2025-04-04 16:43:49] 2025-04-04 07:43:49,512 [wrapper] Test setup, not cleaning
[2025-04-04 16:43:49] 2025-04-04 07:43:49,513 [wrapper] apfmon messages muted
[2025-04-04 16:43:49] 2025-04-04 07:43:49,514 [wrapper] ==== wrapper stdout END ====
[2025-04-04 16:43:49] 2025-04-04 07:43:49,515 [wrapper] ==== wrapper stderr END ====
[2025-04-04 16:43:49]  *** Error codes and diagnostics ***
[2025-04-04 16:43:49]     "exeErrorCode": 0,
[2025-04-04 16:43:49]     "exeErrorDiag": "",
[2025-04-04 16:43:49]     "pilotErrorCode": 0,
[2025-04-04 16:43:49]     "pilotErrorDiag": "",
[2025-04-04 16:43:49]  *** Listing of results directory ***
[2025-04-04 16:43:49] total 415648
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc    495897 Apr  4 10:20 pilot3.tar.gz
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc      5111 Apr  4 10:28 queuedata.json
[2025-04-04 16:43:49] -rwx------. 1 boinc boinc     37140 Apr  4 10:29 runpilot2-wrapper.sh
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc       100 Apr  4 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 16:43:49] -rwxr-xr-x. 1 boinc boinc      7986 Apr  4 15:26 run_atlas
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc       105 Apr  4 15:26 job.xml
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc     17569 Apr  4 15:26 start_atlas.sh
[2025-04-04 16:43:49] drwxrwx--x. 2 boinc boinc        68 Apr  4 15:26 shared
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc    508881 Apr  4 15:26 input.tar.gz
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc      9509 Apr  4 15:26 init_data.xml
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc 220233191 Apr  4 15:26 EVNT.44004365._000430.pool.root.1
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc         0 Apr  4 15:26 boinc_lockfile
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc      2550 Apr  4 15:26 pandaJob.out
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc       424 Apr  4 15:26 setup.sh.local
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc    979986 Apr  4 15:26 agis_schedconf.cvmfs.json
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc   1603525 Apr  4 15:26 agis_ddmendpoints.agis.ALL.json
[2025-04-04 16:43:49] drwx------. 4 boinc boinc      4096 Apr  4 15:26 pilot3
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc 200105641 Apr  4 16:41 HITS.44004367._011009.pool.root.1
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc      1021 Apr  4 16:41 memory_monitor_summary.json
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc    274453 Apr  4 16:41 log.44004367._011009.job.log.tgz.1
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc       529 Apr  4 16:41 boinc_task_state.xml
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc        95 Apr  4 16:43 pilot_heartbeat.json
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc      8192 Apr  4 16:43 boinc_mmap_file
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc        27 Apr  4 16:43 wrapper_checkpoint.txt
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc      7663 Apr  4 16:43 heartbeat.json
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc      4426 Apr  4 16:43 pilotlog.txt
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc    452305 Apr  4 16:43 log.44004367._011009.job.log.1
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc       357 Apr  4 16:43 output.list
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc       620 Apr  4 16:43 runtime_log
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc    747520 Apr  4 16:43 result.tar.gz
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc       642 Apr  4 16:43 xMTNDmW3kK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmSQtKDmzwPsVn.diag
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc     10971 Apr  4 16:43 runtime_log.err
[2025-04-04 16:43:49] -rw-r--r--. 1 boinc boinc     22103 Apr  4 16:43 stderr.txt
[2025-04-04 16:43:49] HITS file was successfully produced:
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc 200105641 Apr  4 16:41 shared/HITS.pool.root.1
[2025-04-04 16:43:49]  *** Contents of shared directory: ***
[2025-04-04 16:43:49] total 411740
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc     17569 Apr  4 15:26 start_atlas.sh
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc    508881 Apr  4 15:26 input.tar.gz
[2025-04-04 16:43:49] -rw-r--r--. 2 boinc boinc 220233191 Apr  4 15:26 ATLAS.root_0
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc 200105641 Apr  4 16:41 HITS.pool.root.1
[2025-04-04 16:43:49] -rw-------. 1 boinc boinc    747520 Apr  4 16:43 result.tar.gz
16:43:51 (2937704): run_atlas exited; CPU time 21327.120564
16:43:51 (2937704): called boinc_finish(0)

</stderr_txt>
]]>

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