Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-04 01:29:36 (6172): Detected: vboxwrapper 26206
2025-04-04 01:29:36 (6172): Detected: BOINC client v8.0.4
2025-04-04 01:29:36 (6172): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-04 01:29:37 (6172): Successfully copied 'init_data.xml' to the shared directory.
2025-04-04 01:29:37 (6172): Create VM. (boinc_d9d8a3c65c9bb1f9, slot#3)
2025-04-04 01:29:38 (6172): Setting Memory Size for VM. (4400MB)
2025-04-04 01:29:38 (6172): Setting CPU Count for VM. (4)
2025-04-04 01:29:38 (6172): Setting Chipset Options for VM.
2025-04-04 01:29:38 (6172): Setting Graphics Controller Options for VM.
2025-04-04 01:29:39 (6172): Setting Boot Options for VM.
2025-04-04 01:29:39 (6172): Setting Network Configuration for NAT.
2025-04-04 01:29:39 (6172): Enabling VM Network Access.
2025-04-04 01:29:39 (6172): Disabling USB Support for VM.
2025-04-04 01:29:40 (6172): Disabling COM Port Support for VM.
2025-04-04 01:29:40 (6172): Disabling LPT Port Support for VM.
2025-04-04 01:29:40 (6172): Disabling Audio Support for VM.
2025-04-04 01:29:40 (6172): Disabling Clipboard Support for VM.
2025-04-04 01:29:41 (6172): Disabling Drag and Drop Support for VM.
2025-04-04 01:29:41 (6172): Adding storage controller(s) to VM.
2025-04-04 01:29:41 (6172): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-04 01:29:42 (6172): Adding VirtualBox Guest Additions to VM.
2025-04-04 01:29:42 (6172): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-04 01:29:43 (6172): forwarding host port 56380 to guest port 80
2025-04-04 01:29:43 (6172): Enabling remote desktop for VM.
2025-04-04 01:29:43 (6172): Required extension pack not installed, remote desktop not enabled.
2025-04-04 01:29:43 (6172): Enabling shared directory for VM.
2025-04-04 01:29:44 (6172): Starting VM using VBoxManage interface. (boinc_d9d8a3c65c9bb1f9, slot#3)
2025-04-04 01:29:54 (6172): Successfully started VM. (PID = '12684')
2025-04-04 01:29:54 (6172): Reporting VM Process ID to BOINC.
2025-04-04 01:29:54 (6172): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-04 01:29:54 (6172): Guest Log: CPUID EDX: 0x178bfbff
2025-04-04 01:29:54 (6172): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-04 01:29:54 (6172): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-04 01:29:54 (6172): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-04 01:29:54 (6172): Detected: Web Application Enabled (http://localhost:56380)
2025-04-04 01:29:54 (6172): Preference change detected
2025-04-04 01:29:54 (6172): Setting CPU throttle for VM. (60%)
2025-04-04 01:29:55 (6172): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-04 01:29:56 (6172): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-04 01:29:56 (6172): Guest Log: BIOS: Booting from Hard Disk...
2025-04-04 01:31:19 (6172): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-04 01:31:19 (6172): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-04 01:31:19 (6172): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-04 01:31:29 (6172): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-04 01:31:29 (6172): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-04 01:31:47 (6172): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000108 main     Log opened 2025-04-04T01:31:45.366084000Z
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000183 main     OS Product: Linux
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000230 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000258 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000280 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000281 main     Process ID: 1310
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000281 main     Package type: LINUX_64BITS_GENERIC
2025-04-04 01:31:47 (6172): Guest Log: 00:00:00.000852 main     5.2.32 r132073 started. Verbose level = 0
2025-04-04 01:31:47 (6172): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-04 01:31:47 (6172): Guest Log: [INFO] Mounting shared directory
2025-04-04 01:31:47 (6172): Guest Log: [INFO] Checking for init_data.xml
2025-04-04 01:31:57 (6172): Guest Log: 00:00:10.002677 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 655 034 000ns (GuestNow=1 743 744 717 023 327 000 ns GuestLast=1 743 730 305 368 293 000 ns fSetTimeLastLoop=true )
2025-04-04 01:32:43 (6172): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-04 01:32:43 (6172): Guest Log: [INFO] Detected branch: prod
2025-04-04 01:32:44 (6172): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-04 01:32:44 (6172): Guest Log: Copying input files
2025-04-04 01:32:46 (6172): Guest Log: Copied input files into RunAtlas.
2025-04-04 01:32:47 (6172): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-04 01:32:47 (6172): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-04 01:32:47 (6172): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-04 01:32:47 (6172): Guest Log: Further information can be found at the LHC@home message board.
2025-04-04 01:33:57 (6172): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-04 01:33:58 (6172): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-04 01:33:58 (6172): Guest Log: 2.6.3.0 1614 2 30136 144478 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-04 01:34:04 (6172): Guest Log: copied the webapp to /var/www
2025-04-04 01:34:04 (6172): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-04 01:34:04 (6172): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-04 01:34:04 (6172): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-04 01:34:04 (6172): Guest Log:  *** Starting ATLAS job. (PandaID=6586322341 taskID=43634898) ***
2025-04-04 03:10:00 (6172): Status Report: Elapsed Time: '6000.986685'
2025-04-04 03:10:00 (6172): Status Report: CPU Time: '10797.156250'
2025-04-04 04:50:04 (6172): Status Report: Elapsed Time: '12000.986685'
2025-04-04 04:50:04 (6172): Status Report: CPU Time: '25284.828125'
2025-04-04 06:30:08 (6172): Status Report: Elapsed Time: '18000.986685'
2025-04-04 06:30:08 (6172): Status Report: CPU Time: '39765.078125'
2025-04-04 08:10:14 (6172): Status Report: Elapsed Time: '24001.876614'
2025-04-04 08:10:14 (6172): Status Report: CPU Time: '54007.062500'
2025-04-04 08:11:30 (6172): Guest Log:  *** Job finished ***
2025-04-04 08:11:30 (6172): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:19,203 | INFO     | [payload] validate_post thread has finished
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:19,394 | INFO     | [data] copytool_out thread has finished
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:22,421 | INFO     | [data] queue_monitor thread has finished
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:24,075 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456575969088)>', '<ExcThread(monitor, started 140456142817024)>']
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:24,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:24,461 | INFO     | [monitor] control thread has ended
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,102 | INFO     | all workflow threads have been joined
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,102 | INFO     | end of generic workflow (traces error code: 0)
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,102 | INFO     | traces error code: 0
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,214 [wrapper] ==== pilot stdout END ====
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,218 [wrapper] ==== wrapper stdout RESUME ====
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,222 [wrapper] pilotpid: 5980
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,226 [wrapper] Pilot exit status: 0
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,275 [wrapper] pandaids: 6586322341
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,302 [wrapper] cleanup supervisor_pilot 24216 5981
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,310 [wrapper] Test setup, not cleaning
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,314 [wrapper] apfmon messages muted
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,317 [wrapper] ==== wrapper stdout END ====
2025-04-04 08:11:30 (6172): Guest Log: 2025-04-04 12:11:29,321 [wrapper] ==== wrapper stderr END ====
2025-04-04 08:11:30 (6172): Guest Log:  *** Error codes and diagnostics ***
2025-04-04 08:11:30 (6172): Guest Log:     "exeErrorCode": 0,
2025-04-04 08:11:30 (6172): Guest Log:     "exeErrorDiag": "",
2025-04-04 08:11:30 (6172): Guest Log:     "pilotErrorCode": 0,
2025-04-04 08:11:30 (6172): Guest Log:     "pilotErrorDiag": "",
2025-04-04 08:11:30 (6172): Guest Log:  *** Listing of results directory ***
2025-04-04 08:11:30 (6172): Guest Log: total 321300
2025-04-04 08:11:30 (6172): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 19:25 pilot3.tar.gz
2025-04-04 08:11:30 (6172): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 19:46 queuedata.json
2025-04-04 08:11:30 (6172): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 19:48 runpilot2-wrapper.sh
2025-04-04 08:11:30 (6172): Guest Log: -rwxr-xr-x. 1 atlas atlas     12282 Apr  4 05:32 init_data.xml
2025-04-04 08:11:30 (6172): Guest Log: -rwxr-xr-x. 1 atlas atlas    508892 Apr  4 05:32 input.tar.gz
2025-04-04 08:11:30 (6172): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  4 05:32 start_atlas.sh
2025-04-04 08:11:30 (6172): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 05:32 EVNT.43634896._000657.pool.root.1 -> /data/./ATLAS.root_0
2025-04-04 08:11:30 (6172): Guest Log: -rw-r--r--. 1 atlas atlas      2600 Apr  4 05:34 pandaJob.out
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 05:34 setup.sh.local
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas    979986 Apr  4 05:36 agis_schedconf.cvmfs.json
2025-04-04 08:11:30 (6172): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 05:36 pilot3
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas 321099381 Apr  4 12:09 HITS.43634898._017171.pool.root.1
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas      1046 Apr  4 12:10 memory_monitor_summary.json
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  4 12:11 agis_ddmendpoints.agis.ALL.json
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas    387766 Apr  4 12:11 log.43634898._017171.job.log.tgz.1
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 12:11 pilot_heartbeat.json
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas      7699 Apr  4 12:11 heartbeat.json
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas      4413 Apr  4 12:11 pilotlog.txt
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas   1681246 Apr  4 12:11 log.43634898._017171.job.log.1
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 12:11 output.list
2025-04-04 08:11:30 (6172): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 12:11 runtime_log
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas   2088960 Apr  4 12:11 result.tar.gz
2025-04-04 08:11:30 (6172): Guest Log: -rw-r--r--. 1 atlas atlas     10899 Apr  4 12:11 runtime_log.err
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas       647 Apr  4 12:11 iDjMDmOjfK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmxvHLDmC5bQsm.diag
2025-04-04 08:11:30 (6172): Guest Log: Looking for outputfile HITS.43634898._017171.pool.root.1
2025-04-04 08:11:30 (6172): Guest Log: HITS file was successfully produced
2025-04-04 08:11:30 (6172): Guest Log: -rw-------. 1 atlas atlas 321099381 Apr  4 12:09 /home/atlas/RunAtlas/HITS.43634898._017171.pool.root.1
2025-04-04 08:11:32 (6172): Guest Log: Successfully finished the ATLAS job!
2025-04-04 08:11:32 (6172): Guest Log: Copying the results back to the shared directory!
2025-04-04 08:11:32 (6172): Guest Log:  *** Contents of shared directory: ***
2025-04-04 08:11:32 (6172): Guest Log: total 666996
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root 359266285 Apr  4 05:29 ATLAS.root_0
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root 321099381 Apr  4 12:11 HITS.pool.root.1
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root     12282 Apr  4 05:29 init_data.xml
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root    508892 Apr  4 05:29 input.tar.gz
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root   2088960 Apr  4 12:11 result.tar.gz
2025-04-04 08:11:32 (6172): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 05:29 start_atlas.sh
2025-04-04 08:11:32 (6172): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-04 08:11:32 (6172): VM Completion File Detected.
2025-04-04 08:11:32 (6172): Powering off VM.
2025-04-04 08:11:32 (6172): Successfully stopped VM.
2025-04-04 08:11:32 (6172): Deregistering VM. (boinc_d9d8a3c65c9bb1f9, slot#3)
2025-04-04 08:11:32 (6172): Removing network bandwidth throttle group from VM.
2025-04-04 08:11:32 (6172): Removing VM from VirtualBox.
08:11:37 (6172): called boinc_finish(0)

</stderr_txt>
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