Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:50:58 (2453113): wrapper (7.7.26015): starting
00:50:58 (2453113): wrapper: running run_atlas (--nthreads 8)
[2025-04-04 00:50:58] Arguments: --nthreads 8
[2025-04-04 00:50:58] Threads: 8
[2025-04-04 00:50:58] Checking for CVMFS
[2025-04-04 00:50:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 00:50:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 00:50:59] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 00:51:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 00:51:00] 2.12.6.0 2303914 11564 353400 144477 3 564 25896207 32935936 27571 130560 0 16675684 99.656 14935044 23006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-04 00:51:00] CVMFS is ok
[2025-04-04 00:51:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-04 00:51:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-04 00:51:00] Further information can be found at the LHC@home message board.
[2025-04-04 00:51:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 00:51:00] Checking for apptainer binary...
[2025-04-04 00:51:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 00:51:00] Running /usr/bin/apptainer --version
[2025-04-04 00:51:00] apptainer version 1.4.0-1.el9
[2025-04-04 00:51:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 00:51:01] c6-2-11-1.aglt2.org
[2025-04-04 00:51:01] apptainer works
[2025-04-04 00:51:01] Set ATHENA_PROC_NUMBER=8
[2025-04-04 00:51:01] Set ATHENA_CORE_NUMBER=8
[2025-04-04 00:51:01] Starting ATLAS job with PandaID=6586398999
[2025-04-04 00:51:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 05:05:03]  *** The last 200 lines of the pilot log: ***
[2025-04-04 05:05:03] 2025-04-04 09:04:45,766 | INFO     | mean y: 2456609.016194332
[2025-04-04 05:05:03] 2025-04-04 09:04:45,766 | INFO     | -- intersect: -48155538251.04626
[2025-04-04 05:05:03] 2025-04-04 09:04:45,766 | INFO     | intersect: -48155538251.04626
[2025-04-04 05:05:03] 2025-04-04 09:04:45,766 | INFO     | chi2: 4.805902505543086
[2025-04-04 05:05:03] 2025-04-04 09:04:45,767 | INFO     | sum of square deviations: 4395221253.17768
[2025-04-04 05:05:03] 2025-04-04 09:04:45,768 | INFO     | sum of deviations: 140982689855.71484
[2025-04-04 05:05:03] 2025-04-04 09:04:45,768 | INFO     | mean x: 1743749763.913223
[2025-04-04 05:05:03] 2025-04-04 09:04:45,768 | INFO     | mean y: 2463006.5578512396
[2025-04-04 05:05:03] 2025-04-04 09:04:45,769 | INFO     | -- intersect: -55930678464.7654
[2025-04-04 05:05:03] 2025-04-04 09:04:45,769 | INFO     | intersect: -55930678464.7654
[2025-04-04 05:05:03] 2025-04-04 09:04:45,773 | INFO     | chi2: 4.125974676827924
[2025-04-04 05:05:03] 2025-04-04 09:04:45,773 | INFO     | current chi2=4.125974676827924 (change=14.147765751197399 %)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,774 | INFO     | right removable region: 241
[2025-04-04 05:05:03] 2025-04-04 09:04:45,774 | INFO     | sum of square deviations: 4395218205.805789
[2025-04-04 05:05:03] 2025-04-04 09:04:45,775 | INFO     | sum of deviations: 66903784082.90501
[2025-04-04 05:05:03] 2025-04-04 09:04:45,776 | INFO     | mean x: 1743750068.929752
[2025-04-04 05:05:03] 2025-04-04 09:04:45,776 | INFO     | mean y: 2490611.582644628
[2025-04-04 05:05:03] 2025-04-04 09:04:45,776 | INFO     | -- intersect: -26540782701.246788
[2025-04-04 05:05:03] 2025-04-04 09:04:45,776 | INFO     | intersect: -26540782701.246788
[2025-04-04 05:05:03] 2025-04-04 09:04:45,777 | INFO     | chi2: 2.3099414693189835
[2025-04-04 05:05:03] 2025-04-04 09:04:45,777 | INFO     | current chi2=2.3099414693189835 (change=51.935323975991665 %)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,781 | INFO     | sum of square deviations: 4128381482.3628674
[2025-04-04 05:05:03] 2025-04-04 09:04:45,784 | INFO     | sum of deviations: 23708056029.029533
[2025-04-04 05:05:03] 2025-04-04 09:04:45,784 | INFO     | mean x: 1743750221.4388185
[2025-04-04 05:05:03] 2025-04-04 09:04:45,784 | INFO     | mean y: 2515300.105485232
[2025-04-04 05:05:03] 2025-04-04 09:04:45,784 | INFO     | -- intersect: -10011318965.724716
[2025-04-04 05:05:03] 2025-04-04 09:04:45,784 | INFO     | intersect: -10011318965.724716
[2025-04-04 05:05:03] 2025-04-04 09:04:45,785 | INFO     | chi2: 1.2274761726488597
[2025-04-04 05:05:03] 2025-04-04 09:04:45,789 | INFO     | current chi2=1.2274761726488597 (change=46.86115691880522 %)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,790 | INFO     | sum of square deviations: 3872568221.3793054
[2025-04-04 05:05:03] 2025-04-04 09:04:45,791 | INFO     | sum of deviations: -1402792231.2068977
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | mean x: 1743750373.9482758
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | mean y: 2530174.2327586208
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | -- intersect: 634183211.1591221
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | intersect: 634183211.1591221
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | chi2: 0.7314791477302549
[2025-04-04 05:05:03] 2025-04-04 09:04:45,792 | INFO     | current chi2=0.7314791477302549 (change=40.40787397512221 %)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,793 | INFO     | sum of square deviations: 3627545860.3524284
[2025-04-04 05:05:03] 2025-04-04 09:04:45,798 | INFO     | sum of deviations: -1906888854.3568268
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | mean x: 1743750526.4581497
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | mean y: 2530463.436123348
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | -- intersect: 919166274.9979504
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | intersect: 919166274.9979504
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | chi2: 0.7196581585877098
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | current chi2=0.7196581585877098 (change=1.6160391146111432 %)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,799 | INFO     | left removable region: 40
[2025-04-04 05:05:03] 2025-04-04 09:04:45,800 | INFO     | sum of square deviations: 2518491419.890558
[2025-04-04 05:05:03] 2025-04-04 09:04:45,801 | INFO     | sum of deviations: 6562713619.940295
[2025-04-04 05:05:03] 2025-04-04 09:04:45,805 | INFO     | mean x: 1743750953.4577115
[2025-04-04 05:05:03] 2025-04-04 09:04:45,805 | INFO     | mean y: 2542640.5223880596
[2025-04-04 05:05:03] 2025-04-04 09:04:45,805 | INFO     | -- intersect: -4541343450.039751
[2025-04-04 05:05:03] 2025-04-04 09:04:45,806 | INFO     | intersect: -4541343450.039751
[2025-04-04 05:05:03] 2025-04-04 09:04:45,806 | INFO     | chi2: 0.0022164539716103718
[2025-04-04 05:05:03] 2025-04-04 09:04:45,806 | INFO     | -- intersect: -4541343450.039751
[2025-04-04 05:05:03] 2025-04-04 09:04:45,806 | INFO     | current memory leak: 2.61 B/s (using 201 data points, chi2=0.00)
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | ..............................
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . Timing measurements:
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . get job = 0 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . initial setup = 4 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . payload setup = 25 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . stage-in = 0 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . payload execution = 15046 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,807 | INFO     | . stage-out = 6 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,808 | INFO     | . log creation = 0 s
[2025-04-04 05:05:03] 2025-04-04 09:04:45,808 | INFO     | ..............................
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | job summary report
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | --------------------------------------------------
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | PanDA job id: 6586398999
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | task id: 43634898
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | errors: (none)
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | pilot state: finished 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | transexitcode: 0
[2025-04-04 05:05:03] 2025-04-04 09:04:46,299 | INFO     | exeerrorcode: 0
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | exeerrordiag: 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | exitcode: 0
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | exitmsg: OK
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | cpuconsumptiontime: 77101 s
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | nevents: 400
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | neventsw: 0
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | pid: 2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | pgrp: 2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | corecount: 8
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | event service: False
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | sizes: {0: 2416572, 1: 2417173, 2: 2417456, 3: 2417456, 14: 2417484, 25: 2417512, 27: 2417874, 35: 2417902, 15075: 2448763, 15076: 2448762, 15083: 2457759, 15087: 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | --------------------------------------------------
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | 
[2025-04-04 05:05:03] 2025-04-04 09:04:46,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,441 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 05:05:03] 2025-04-04 09:04:46,441 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,441 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 05:05:03] 2025-04-04 09:04:46,441 | INFO     | job 6586398999 has completed (purged errors)
[2025-04-04 05:05:03] 2025-04-04 09:04:46,441 | INFO     | overall cleanup function is called
[2025-04-04 05:05:03] 2025-04-04 09:04:47,584 | INFO     | --- collectZombieJob: --- 10, [2469459]
[2025-04-04 05:05:03] 2025-04-04 09:04:47,584 | INFO     | zombie collector waiting for pid 2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:47,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 05:05:03] 2025-04-04 09:04:47,585 | INFO     | collected zombie processes
[2025-04-04 05:05:03] 2025-04-04 09:04:47,585 | INFO     | will attempt to kill all subprocesses of pid=2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:48,317 | INFO     | PID=2459288 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-04 05:05:03] 2025-04-04 09:04:48,317 | INFO     | .. there are 29 such processes running
[2025-04-04 05:05:03] 2025-04-04 09:04:49,583 | INFO     | process IDs to be killed: [2469459] (in reverse order)
[2025-04-04 05:05:03] 2025-04-04 09:04:50,044 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 05:05:03] 2025-04-04 09:04:50,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 05:05:03] 2025-04-04 09:04:50,069 | INFO     | did not find any defunct processes belonging to 2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:50,088 | INFO     | did not find any defunct processes belonging to 2469459
[2025-04-04 05:05:03] 2025-04-04 09:04:50,088 | INFO     | ready for new job
[2025-04-04 05:05:03] 2025-04-04 09:04:50,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 05:05:03] 2025-04-04 09:04:50,090 | INFO     | **************************************
[2025-04-04 05:05:03] 2025-04-04 09:04:50,090 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 05:05:03] 2025-04-04 09:04:50,090 | INFO     | **************************************
[2025-04-04 05:05:03] 2025-04-04 09:04:50,090 | INFO     | 
[2025-04-04 05:05:03] 2025-04-04 09:04:50,134 | INFO     | architecture information:
[2025-04-04 05:05:03] 2025-04-04 09:04:50,162 | INFO     | executing command: cat /etc/os-release
[2025-04-04 05:05:03] 2025-04-04 09:04:50,231 | INFO     | cat /etc/os-release:
[2025-04-04 05:05:03] NAME="CentOS Linux"
[2025-04-04 05:05:03] VERSION="7 (Core)"
[2025-04-04 05:05:03] ID="centos"
[2025-04-04 05:05:03] ID_LIKE="rhel fedora"
[2025-04-04 05:05:03] VERSION_ID="7"
[2025-04-04 05:05:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 05:05:03] ANSI_COLOR="0;31"
[2025-04-04 05:05:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 05:05:03] HOME_URL="https://www.centos.org/"
[2025-04-04 05:05:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 05:05:03] 
[2025-04-04 05:05:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 05:05:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 05:05:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 05:05:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 05:05:03] 
[2025-04-04 05:05:03] 2025-04-04 09:04:50,232 | INFO     | **************************************
[2025-04-04 05:05:03] 2025-04-04 09:04:50,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-04-04 05:05:03] 2025-04-04 09:04:50,798 | INFO     | sufficient remaining disk space (92242182144 B)
[2025-04-04 05:05:03] 2025-04-04 09:04:50,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 05:05:03] 2025-04-04 09:04:50,799 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 05:05:03] 2025-04-04 09:04:50,799 | INFO     | update_server=False
[2025-04-04 05:05:03] 2025-04-04 09:04:50,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 05:05:03] 2025-04-04 09:04:50,800 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-04 05:05:03] 2025-04-04 09:04:50,800 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 05:05:03] 2025-04-04 09:04:50,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 05:05:03] 2025-04-04 09:04:50,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 05:05:03] 2025-04-04 09:04:50,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 05:05:03] 2025-04-04 09:04:50,801 | INFO     | aborting loop
[2025-04-04 05:05:03] 2025-04-04 09:04:50,927 | INFO     | all payload control threads have been joined
[2025-04-04 05:05:03] 2025-04-04 09:04:51,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 05:05:03] 2025-04-04 09:04:51,220 | INFO     | all job control threads have been joined
[2025-04-04 05:05:03] 2025-04-04 09:04:51,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 05:05:03] 2025-04-04 09:04:51,342 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 05:05:03] 2025-04-04 09:04:51,426 | INFO     | all data control threads have been joined
[2025-04-04 05:05:03] 2025-04-04 09:04:51,805 | INFO     | [job] retrieve thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:51,829 | INFO     | [job] job monitor thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:51,933 | INFO     | [payload] control thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,013 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,200 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,226 | INFO     | [job] control thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,348 | INFO     | [job] queue monitor thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,432 | INFO     | [data] control thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,467 | INFO     | [payload] validate_post thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:52,551 | INFO     | [payload] failed_post thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:53,107 | INFO     | [data] copytool_out thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:53,127 | INFO     | [job] validate thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:53,153 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:53,290 | INFO     | [data] copytool_in thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:55,241 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 05:05:03] 2025-04-04 09:04:57,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651758167872)>', '<ExcThread(monitor, started 140651043743488)>']
[2025-04-04 05:05:03] 2025-04-04 09:04:57,844 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 05:05:03] 2025-04-04 09:04:57,844 | INFO     | [monitor] control thread has ended
[2025-04-04 05:05:03] 2025-04-04 09:05:02,288 | INFO     | all workflow threads have been joined
[2025-04-04 05:05:03] 2025-04-04 09:05:02,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 05:05:03] 2025-04-04 09:05:02,290 | INFO     | traces error code: 0
[2025-04-04 05:05:03] 2025-04-04 09:05:02,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 05:05:03] 2025-04-04 09:05:02,545 [wrapper] ==== pilot stdout END ====
[2025-04-04 05:05:03] 2025-04-04 09:05:02,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 05:05:03] 2025-04-04 09:05:02,551 [wrapper] pilotpid: 2459288
[2025-04-04 05:05:03] 2025-04-04 09:05:02,553 [wrapper] Pilot exit status: 0
[2025-04-04 05:05:03] 2025-04-04 09:05:02,575 [wrapper] pandaids: 6586398999
[2025-04-04 05:05:03] 2025-04-04 09:05:02,686 [wrapper] cleanup supervisor_pilot 4082459 2459289
[2025-04-04 05:05:03] 2025-04-04 09:05:02,697 [wrapper] Test setup, not cleaning
[2025-04-04 05:05:03] 2025-04-04 09:05:02,732 [wrapper] apfmon messages muted
[2025-04-04 05:05:03] 2025-04-04 09:05:02,736 [wrapper] ==== wrapper stdout END ====
[2025-04-04 05:05:03] 2025-04-04 09:05:02,739 [wrapper] ==== wrapper stderr END ====
[2025-04-04 05:05:03]  *** Error codes and diagnostics ***
[2025-04-04 05:05:03]     "exeErrorCode": 0,
[2025-04-04 05:05:03]     "exeErrorDiag": "",
[2025-04-04 05:05:03]     "pilotErrorCode": 0,
[2025-04-04 05:05:03]     "pilotErrorDiag": "",
[2025-04-04 05:05:03]  *** Listing of results directory ***
[2025-04-04 05:05:03] total 669932
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas    495897 Apr  3 19:51 pilot3.tar.gz
[2025-04-04 05:05:03] -rwx------. 1 boincer umatlas     37140 Apr  3 19:55 runpilot2-wrapper.sh
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas      5111 Apr  3 19:55 queuedata.json
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas       100 Apr  4 00:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 05:05:03] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  4 00:50 run_atlas
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas       105 Apr  4 00:50 job.xml
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas 359060244 Apr  4 00:50 EVNT.43634896._000701.pool.root.1
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 00:50 start_atlas.sh
[2025-04-04 05:05:03] drwxrwx--x. 2 boincer umatlas      4096 Apr  4 00:50 shared
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas    508890 Apr  4 00:50 input.tar.gz
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas         0 Apr  4 00:50 boinc_lockfile
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas      2600 Apr  4 00:51 pandaJob.out
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas       467 Apr  4 00:51 setup.sh.local
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas    979986 Apr  4 00:51 agis_schedconf.cvmfs.json
[2025-04-04 05:05:03] drwx------. 4 boincer umatlas      4096 Apr  4 00:51 pilot3
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas 319681326 Apr  4 05:02 HITS.43634898._018907.pool.root.1
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas       532 Apr  4 05:02 boinc_task_state.xml
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas      1052 Apr  4 05:03 memory_monitor_summary.json
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas   1603525 Apr  4 05:04 agis_ddmendpoints.agis.ALL.json
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas        95 Apr  4 05:04 pilot_heartbeat.json
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas    410397 Apr  4 05:04 log.43634898._018907.job.log.tgz.1
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas      6857 Apr  4 05:04 init_data.xml
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas      7726 Apr  4 05:04 heartbeat.json
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas      8192 Apr  4 05:05 boinc_mmap_file
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas      4476 Apr  4 05:05 pilotlog.txt
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas        28 Apr  4 05:05 wrapper_checkpoint.txt
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas   1301483 Apr  4 05:05 log.43634898._018907.job.log.1
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas       357 Apr  4 05:05 output.list
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas       620 Apr  4 05:05 runtime_log
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas   1730560 Apr  4 05:05 result.tar.gz
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas     11424 Apr  4 05:05 runtime_log.err
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas       659 Apr  4 05:05 LiyNDm4ZjK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUGILDmAAZomn.diag
[2025-04-04 05:05:03] -rw-r--r--. 1 boincer umatlas     21032 Apr  4 05:05 stderr.txt
[2025-04-04 05:05:03] HITS file was successfully produced:
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas 319681326 Apr  4 05:02 shared/HITS.pool.root.1
[2025-04-04 05:05:03]  *** Contents of shared directory: ***
[2025-04-04 05:05:03] total 665060
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas 359060244 Apr  4 00:50 ATLAS.root_0
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 00:50 start_atlas.sh
[2025-04-04 05:05:03] -rw-r--r--. 2 boincer umatlas    508890 Apr  4 00:50 input.tar.gz
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas 319681326 Apr  4 05:02 HITS.pool.root.1
[2025-04-04 05:05:03] -rw-------. 1 boincer umatlas   1730560 Apr  4 05:05 result.tar.gz
05:05:04 (2453113): run_atlas exited; CPU time 77789.687209
05:05:04 (2453113): called boinc_finish(0)

</stderr_txt>
]]>

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