Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 22:38:15 (21824): Detected: vboxwrapper 26206
2025-04-03 22:38:15 (21824): Detected: BOINC client v8.0.2
2025-04-03 22:38:16 (21824): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-03 22:38:16 (21824): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 22:38:17 (21824): Create VM. (boinc_2d7d59cff872e882, slot#2)
2025-04-03 22:38:17 (21824): Setting Memory Size for VM. (4400MB)
2025-04-03 22:38:17 (21824): Setting CPU Count for VM. (4)
2025-04-03 22:38:18 (21824): Setting Chipset Options for VM.
2025-04-03 22:38:18 (21824): Setting Graphics Controller Options for VM.
2025-04-03 22:38:18 (21824): Setting Boot Options for VM.
2025-04-03 22:38:19 (21824): Setting Network Configuration for NAT.
2025-04-03 22:38:19 (21824): Enabling VM Network Access.
2025-04-03 22:38:19 (21824): Disabling USB Support for VM.
2025-04-03 22:38:19 (21824): Disabling COM Port Support for VM.
2025-04-03 22:38:20 (21824): Disabling LPT Port Support for VM.
2025-04-03 22:38:20 (21824): Disabling Audio Support for VM.
2025-04-03 22:38:20 (21824): Disabling Clipboard Support for VM.
2025-04-03 22:38:20 (21824): Disabling Drag and Drop Support for VM.
2025-04-03 22:38:21 (21824): Adding storage controller(s) to VM.
2025-04-03 22:38:21 (21824): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 22:38:21 (21824): Adding VirtualBox Guest Additions to VM.
2025-04-03 22:38:22 (21824): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 22:38:22 (21824): forwarding host port 61021 to guest port 80
2025-04-03 22:38:22 (21824): Enabling remote desktop for VM.
2025-04-03 22:38:22 (21824): Required extension pack not installed, remote desktop not enabled.
2025-04-03 22:38:22 (21824): Enabling shared directory for VM.
2025-04-03 22:38:23 (21824): Starting VM using VBoxManage interface. (boinc_2d7d59cff872e882, slot#2)
2025-04-03 22:38:28 (21824): Successfully started VM. (PID = '13848')
2025-04-03 22:38:28 (21824): Reporting VM Process ID to BOINC.
2025-04-03 22:38:28 (21824): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-03 22:38:28 (21824): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 22:38:28 (21824): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 22:38:28 (21824): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 22:38:28 (21824): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 22:38:28 (21824): Detected: Web Application Enabled (http://localhost:61021)
2025-04-03 22:38:28 (21824): Preference change detected
2025-04-03 22:38:28 (21824): Setting CPU throttle for VM. (100%)
2025-04-03 22:38:28 (21824): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 22:38:30 (21824): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 22:38:30 (21824): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 22:38:33 (21824): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 22:38:33 (21824): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 22:38:33 (21824): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 22:38:38 (21824): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 22:38:38 (21824): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 22:38:43 (21824): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000089 main     Log opened 2025-04-03T22:38:41.749037000Z
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000178 main     OS Product: Linux
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000206 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000230 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000253 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000254 main     Process ID: 1312
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000254 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 22:38:43 (21824): Guest Log: 00:00:00.000860 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 22:38:43 (21824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 22:38:43 (21824): Guest Log: [INFO] Mounting shared directory
2025-04-03 22:38:44 (21824): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 22:38:51 (21824): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 22:38:51 (21824): Guest Log: [INFO] Detected branch: prod
2025-04-03 22:38:51 (21824): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 22:38:51 (21824): Guest Log: Copying input files
2025-04-03 22:38:52 (21824): Guest Log: Copied input files into RunAtlas.
2025-04-03 22:38:52 (21824): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 22:38:52 (21824): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 22:38:52 (21824): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 22:38:52 (21824): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 22:38:53 (21824): Guest Log: 00:00:10.002432 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 229 746 000ns (GuestNow=1 743 737 932 980 540 000 ns GuestLast=1 743 719 921 750 794 000 ns fSetTimeLastLoop=true )
2025-04-03 22:39:59 (21824): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 22:39:59 (21824): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 22:39:59 (21824): Guest Log: 2.6.3.0 1595 1 32220 144475 4 1 3117321 4096000 0 65024 0 0 n/a 1 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 22:39:59 (21824): Guest Log: copied the webapp to /var/www
2025-04-03 22:40:00 (21824): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-03 22:40:00 (21824): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-03 22:40:00 (21824): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 22:40:00 (21824): Guest Log:  *** Starting ATLAS job. (PandaID=6586398272 taskID=43634898) ***
2025-04-04 00:18:31 (21824): Status Report: Elapsed Time: '6000.000000'
2025-04-04 00:18:31 (21824): Status Report: CPU Time: '17949.578125'
2025-04-04 01:58:33 (21824): Status Report: Elapsed Time: '12000.000000'
2025-04-04 01:58:33 (21824): Status Report: CPU Time: '41452.984375'
2025-04-04 03:33:52 (21824): Guest Log:  *** Job finished ***
2025-04-04 03:33:52 (21824): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:34,706 | INFO     | [job] create_data_payload thread has finished
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:35,074 | INFO     | [data] copytool_out thread has finished
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:36,683 | INFO     | [data] queue_monitor thread has finished
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:38,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446661285696)>', '<ExcThread(monitor, started 140446076487424)>']
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:38,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:38,700 | INFO     | [monitor] control thread has ended
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,608 | INFO     | all workflow threads have been joined
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,608 | INFO     | end of generic workflow (traces error code: 0)
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,608 | INFO     | traces error code: 0
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,685 [wrapper] ==== pilot stdout END ====
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,689 [wrapper] ==== wrapper stdout RESUME ====
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,692 [wrapper] pilotpid: 5972
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,695 [wrapper] Pilot exit status: 0
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,806 [wrapper] pandaids: 6586398272
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,830 [wrapper] cleanup supervisor_pilot 19898 5973
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,833 [wrapper] Test setup, not cleaning
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,837 [wrapper] apfmon messages muted
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,840 [wrapper] ==== wrapper stdout END ====
2025-04-04 03:33:52 (21824): Guest Log: 2025-04-04 08:33:43,843 [wrapper] ==== wrapper stderr END ====
2025-04-04 03:33:52 (21824): Guest Log:  *** Error codes and diagnostics ***
2025-04-04 03:33:52 (21824): Guest Log:     "exeErrorCode": 0,
2025-04-04 03:33:52 (21824): Guest Log:     "exeErrorDiag": "",
2025-04-04 03:33:52 (21824): Guest Log:     "pilotErrorCode": 0,
2025-04-04 03:33:52 (21824): Guest Log:     "pilotErrorDiag": "",
2025-04-04 03:33:52 (21824): Guest Log:  *** Listing of results directory ***
2025-04-04 03:33:52 (21824): Guest Log: total 324176
2025-04-04 03:33:52 (21824): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 23:12 pilot3.tar.gz
2025-04-04 03:33:52 (21824): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 23:13 queuedata.json
2025-04-04 03:33:52 (21824): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 23:13 runpilot2-wrapper.sh
2025-04-04 03:33:52 (21824): Guest Log: -rwxr-xr-x. 1 atlas atlas      9184 Apr  4 03:38 init_data.xml
2025-04-04 03:33:52 (21824): Guest Log: -rwxr-xr-x. 1 atlas atlas    508888 Apr  4 03:38 input.tar.gz
2025-04-04 03:33:52 (21824): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  4 03:38 start_atlas.sh
2025-04-04 03:33:52 (21824): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 03:38 EVNT.43634896._000690.pool.root.1 -> /data/./ATLAS.root_0
2025-04-04 03:33:52 (21824): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr  4 03:39 pandaJob.out
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 03:40 setup.sh.local
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas    979994 Apr  4 03:43 agis_schedconf.cvmfs.json
2025-04-04 03:33:52 (21824): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 03:43 pilot3
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas 324581073 Apr  4 08:31 HITS.43634898._018627.pool.root.1
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas      1027 Apr  4 08:32 memory_monitor_summary.json
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  4 08:32 agis_ddmendpoints.agis.ALL.json
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas    347971 Apr  4 08:32 log.43634898._018627.job.log.tgz.1
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 08:32 pilot_heartbeat.json
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas      7677 Apr  4 08:33 heartbeat.json
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas      4413 Apr  4 08:33 pilotlog.txt
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas   1453768 Apr  4 08:33 log.43634898._018627.job.log.1
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 08:33 output.list
2025-04-04 03:33:52 (21824): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 08:33 runtime_log
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas   1822720 Apr  4 08:33 result.tar.gz
2025-04-04 03:33:52 (21824): Guest Log: -rw-r--r--. 1 atlas atlas     10953 Apr  4 08:33 runtime_log.err
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas       665 Apr  4 08:33 4zXLDm5viK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmZCILDmDxmDDo.diag
2025-04-04 03:33:52 (21824): Guest Log: Looking for outputfile HITS.43634898._018627.pool.root.1
2025-04-04 03:33:52 (21824): Guest Log: HITS file was successfully produced
2025-04-04 03:33:52 (21824): Guest Log: -rw-------. 1 atlas atlas 324581073 Apr  4 08:31 /home/atlas/RunAtlas/HITS.43634898._018627.pool.root.1
2025-04-04 03:33:53 (21824): Guest Log: Successfully finished the ATLAS job!
2025-04-04 03:33:53 (21824): Guest Log: Copying the results back to the shared directory!
2025-04-04 03:33:53 (21824): Guest Log:  *** Contents of shared directory: ***
2025-04-04 03:33:53 (21824): Guest Log: total 669536
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root 358652618 Apr  4 03:38 ATLAS.root_0
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root 324581073 Apr  4  2025 HITS.pool.root.1
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root      9184 Apr  4 03:38 init_data.xml
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root    508888 Apr  4 03:38 input.tar.gz
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root   1822720 Apr  4  2025 result.tar.gz
2025-04-04 03:33:53 (21824): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 03:38 start_atlas.sh
2025-04-04 03:33:53 (21824): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-04 03:33:53 (21824): VM Completion File Detected.
2025-04-04 03:33:53 (21824): Powering off VM.
2025-04-04 03:33:53 (21824): Successfully stopped VM.
2025-04-04 03:33:53 (21824): Deregistering VM. (boinc_2d7d59cff872e882, slot#2)
2025-04-04 03:33:53 (21824): Removing network bandwidth throttle group from VM.
2025-04-04 03:33:54 (21824): Removing VM from VirtualBox.
03:33:59 (21824): called boinc_finish(0)

</stderr_txt>
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