Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:43:26 (397354): wrapper (7.7.26015): starting
02:43:26 (397354): wrapper: running run_atlas (--nthreads 9)
[2025-04-04 02:43:26] Arguments: --nthreads 9
[2025-04-04 02:43:26] Threads: 9
[2025-04-04 02:43:26] Checking for CVMFS
[2025-04-04 02:43:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 02:43:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 02:43:27] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 02:43:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 02:43:27] 2.12.6.0 2555540 190871 330280 144480 0 120 39050347 40960000 9738 130560 0 22676026 99.792 12367576 31017 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-04 02:43:27] CVMFS is ok
[2025-04-04 02:43:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-04 02:43:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-04 02:43:27] Further information can be found at the LHC@home message board.
[2025-04-04 02:43:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 02:43:27] Checking for apptainer binary...
[2025-04-04 02:43:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 02:43:27] Running /usr/bin/apptainer --version
[2025-04-04 02:43:27] apptainer version 1.4.0-1.el9
[2025-04-04 02:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 02:43:27] c6-8-12-3.aglt2.org
[2025-04-04 02:43:27] apptainer works
[2025-04-04 02:43:27] Set ATHENA_PROC_NUMBER=9
[2025-04-04 02:43:27] Set ATHENA_CORE_NUMBER=9
[2025-04-04 02:43:28] Starting ATLAS job with PandaID=6586396635
[2025-04-04 02:43:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 14:25:47]  *** The last 200 lines of the pilot log: ***
[2025-04-04 14:25:47] 2025-04-04 18:25:27,875 | INFO     | extracted standard info from prmon json
[2025-04-04 14:25:47] 2025-04-04 18:25:27,875 | INFO     | extracted standard memory fields from prmon json
[2025-04-04 14:25:47] 2025-04-04 18:25:27,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-04 14:25:47] 2025-04-04 18:25:27,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 14:25:47] 2025-04-04 18:25:27,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 14:25:47] 2025-04-04 18:25:27,979 | INFO     | fitting pss+swap vs Time
[2025-04-04 14:25:47] 2025-04-04 18:25:27,980 | INFO     | sum of square deviations: 101424067514.02315
[2025-04-04 14:25:47] 2025-04-04 18:25:28,108 | INFO     | sum of deviations: 100793391262.33511
[2025-04-04 14:25:47] 2025-04-04 18:25:28,108 | INFO     | mean x: 1743770052.4049346
[2025-04-04 14:25:47] 2025-04-04 18:25:28,108 | INFO     | mean y: 2190010.7837445573
[2025-04-04 14:25:47] 2025-04-04 18:25:28,108 | INFO     | -- intersect: -1730736911.5100403
[2025-04-04 14:25:47] 2025-04-04 18:25:28,108 | INFO     | intersect: -1730736911.5100403
[2025-04-04 14:25:47] 2025-04-04 18:25:28,139 | INFO     | chi2: 8.340941917267195
[2025-04-04 14:25:47] 2025-04-04 18:25:28,140 | INFO     | sum of square deviations: 99232092903.19725
[2025-04-04 14:25:47] 2025-04-04 18:25:28,187 | INFO     | sum of deviations: 288790460138.4077
[2025-04-04 14:25:47] 2025-04-04 18:25:28,188 | INFO     | mean x: 1743769899.9078948
[2025-04-04 14:25:47] 2025-04-04 18:25:28,188 | INFO     | mean y: 2203090.2763157897
[2025-04-04 14:25:47] 2025-04-04 18:25:28,188 | INFO     | -- intersect: -5072607860.86589
[2025-04-04 14:25:47] 2025-04-04 18:25:28,188 | INFO     | intersect: -5072607860.86589
[2025-04-04 14:25:47] 2025-04-04 18:25:28,189 | INFO     | chi2: 4.979059373288157
[2025-04-04 14:25:47] 2025-04-04 18:25:28,189 | INFO     | current chi2=4.979059373288157 (change=40.30579012928214 %)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,190 | INFO     | sum of square deviations: 97071932842.35924
[2025-04-04 14:25:47] 2025-04-04 18:25:28,313 | INFO     | sum of deviations: 293334685793.4184
[2025-04-04 14:25:47] 2025-04-04 18:25:28,314 | INFO     | mean x: 1743769747.4108984
[2025-04-04 14:25:47] 2025-04-04 18:25:28,314 | INFO     | mean y: 2203407.5110456552
[2025-04-04 14:25:47] 2025-04-04 18:25:28,314 | INFO     | -- intersect: -5267168860.820237
[2025-04-04 14:25:47] 2025-04-04 18:25:28,314 | INFO     | intersect: -5267168860.820237
[2025-04-04 14:25:47] 2025-04-04 18:25:28,315 | INFO     | chi2: 4.952631758072891
[2025-04-04 14:25:47] 2025-04-04 18:25:28,315 | INFO     | current chi2=4.952631758072891 (change=0.5307752576128358 %)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,315 | INFO     | right removable region: 678
[2025-04-04 14:25:47] 2025-04-04 18:25:28,316 | INFO     | sum of square deviations: 99231922713.19734
[2025-04-04 14:25:47] 2025-04-04 18:25:28,416 | INFO     | sum of deviations: -44579156494.76314
[2025-04-04 14:25:47] 2025-04-04 18:25:28,416 | INFO     | mean x: 1743770204.9078948
[2025-04-04 14:25:47] 2025-04-04 18:25:28,416 | INFO     | mean y: 2200114.178362573
[2025-04-04 14:25:47] 2025-04-04 18:25:28,416 | INFO     | -- intersect: 785575087.9775528
[2025-04-04 14:25:47] 2025-04-04 18:25:28,416 | INFO     | intersect: 785575087.9775528
[2025-04-04 14:25:47] 2025-04-04 18:25:28,417 | INFO     | chi2: 6.11605215931417
[2025-04-04 14:25:47] 2025-04-04 18:25:28,417 | INFO     | current chi2=6.11605215931417 (change=26.674322636717058 %)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,418 | INFO     | sum of square deviations: 97071592462.35928
[2025-04-04 14:25:47] 2025-04-04 18:25:28,435 | INFO     | sum of deviations: -142498346208.346
[2025-04-04 14:25:47] 2025-04-04 18:25:28,435 | INFO     | mean x: 1743770357.4108984
[2025-04-04 14:25:47] 2025-04-04 18:25:28,435 | INFO     | mean y: 2207026.911634757
[2025-04-04 14:25:47] 2025-04-04 18:25:28,435 | INFO     | -- intersect: 2562012483.8432536
[2025-04-04 14:25:47] 2025-04-04 18:25:28,435 | INFO     | intersect: 2562012483.8432536
[2025-04-04 14:25:47] 2025-04-04 18:25:28,440 | INFO     | chi2: 5.181510896334986
[2025-04-04 14:25:47] 2025-04-04 18:25:28,441 | INFO     | current chi2=5.181510896334986 (change=15.280138864675402 %)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,441 | INFO     | left removable region: 20
[2025-04-04 14:25:47] 2025-04-04 18:25:28,441 | INFO     | sum of square deviations: 88340746242.20084
[2025-04-04 14:25:47] 2025-04-04 18:25:28,459 | INFO     | sum of deviations: 19083757914.407314
[2025-04-04 14:25:47] 2025-04-04 18:25:28,464 | INFO     | mean x: 1743770326.9240122
[2025-04-04 14:25:47] 2025-04-04 18:25:28,464 | INFO     | mean y: 2223041.088145897
[2025-04-04 14:25:47] 2025-04-04 18:25:28,464 | INFO     | -- intersect: -374473921.44495773
[2025-04-04 14:25:47] 2025-04-04 18:25:28,464 | INFO     | intersect: -374473921.44495773
[2025-04-04 14:25:47] 2025-04-04 18:25:28,465 | INFO     | chi2: 1.1165047515684672
[2025-04-04 14:25:47] 2025-04-04 18:25:28,466 | INFO     | -- intersect: -374473921.44495773
[2025-04-04 14:25:47] 2025-04-04 18:25:28,466 | INFO     | current memory leak: 0.22 B/s (using 658 data points, chi2=1.12)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | ..............................
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . Timing measurements:
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . get job = 0 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . initial setup = 3 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . payload setup = 9 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . stage-in = 0 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,467 | INFO     | . payload execution = 42016 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,468 | INFO     | . stage-out = 8 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,468 | INFO     | . log creation = 2 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,472 | INFO     | ..............................
[2025-04-04 14:25:47] 2025-04-04 18:25:28,679 | INFO     | 
[2025-04-04 14:25:47] 2025-04-04 18:25:28,679 | INFO     | job summary report
[2025-04-04 14:25:47] 2025-04-04 18:25:28,679 | INFO     | --------------------------------------------------
[2025-04-04 14:25:47] 2025-04-04 18:25:28,679 | INFO     | PanDA job id: 6586396635
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | task id: 43634898
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | errors: (none)
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | pilot state: finished 
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | transexitcode: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | exeerrorcode: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | exeerrordiag: 
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | exitcode: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | exitmsg: OK
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | cpuconsumptiontime: 79079 s
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | nevents: 400
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | neventsw: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | pid: 424993
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | pgrp: 424993
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | corecount: 9
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | event service: False
[2025-04-04 14:25:47] 2025-04-04 18:25:28,680 | INFO     | sizes: {0: 2417176, 1: 2417375, 9: 2417581, 12: 2417609, 42030: 2460122, 42031: 2460121, 42041: 2469246, 42043: 2469302, 42080: 2469472}
[2025-04-04 14:25:47] 2025-04-04 18:25:28,681 | INFO     | --------------------------------------------------
[2025-04-04 14:25:47] 2025-04-04 18:25:28,681 | INFO     | 
[2025-04-04 14:25:47] 2025-04-04 18:25:28,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-04 14:25:47] 2025-04-04 18:25:29,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | job 6586396635 has completed (purged errors)
[2025-04-04 14:25:47] 2025-04-04 18:25:29,030 | INFO     | overall cleanup function is called
[2025-04-04 14:25:47] 2025-04-04 18:25:30,075 | INFO     | --- collectZombieJob: --- 10, [424993]
[2025-04-04 14:25:47] 2025-04-04 18:25:30,075 | INFO     | zombie collector waiting for pid 424993
[2025-04-04 14:25:47] 2025-04-04 18:25:30,075 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 14:25:47] 2025-04-04 18:25:30,075 | INFO     | collected zombie processes
[2025-04-04 14:25:47] 2025-04-04 18:25:30,075 | INFO     | will attempt to kill all subprocesses of pid=424993
[2025-04-04 14:25:47] 2025-04-04 18:25:32,939 | INFO     | process IDs to be killed: [424993] (in reverse order)
[2025-04-04 14:25:47] 2025-04-04 18:25:33,899 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 14:25:47] 2025-04-04 18:25:33,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 14:25:47] 2025-04-04 18:25:33,995 | INFO     | did not find any defunct processes belonging to 424993
[2025-04-04 14:25:47] 2025-04-04 18:25:34,076 | INFO     | did not find any defunct processes belonging to 424993
[2025-04-04 14:25:47] 2025-04-04 18:25:34,076 | INFO     | ready for new job
[2025-04-04 14:25:47] 2025-04-04 18:25:34,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 14:25:47] 2025-04-04 18:25:34,112 | INFO     | **************************************
[2025-04-04 14:25:47] 2025-04-04 18:25:34,112 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 14:25:47] 2025-04-04 18:25:34,112 | INFO     | **************************************
[2025-04-04 14:25:47] 2025-04-04 18:25:34,112 | INFO     | 
[2025-04-04 14:25:47] 2025-04-04 18:25:34,143 | INFO     | architecture information:
[2025-04-04 14:25:47] 2025-04-04 18:25:34,173 | INFO     | executing command: cat /etc/os-release
[2025-04-04 14:25:47] 2025-04-04 18:25:34,361 | INFO     | cat /etc/os-release:
[2025-04-04 14:25:47] NAME="CentOS Linux"
[2025-04-04 14:25:47] VERSION="7 (Core)"
[2025-04-04 14:25:47] ID="centos"
[2025-04-04 14:25:47] ID_LIKE="rhel fedora"
[2025-04-04 14:25:47] VERSION_ID="7"
[2025-04-04 14:25:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 14:25:47] ANSI_COLOR="0;31"
[2025-04-04 14:25:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 14:25:47] HOME_URL="https://www.centos.org/"
[2025-04-04 14:25:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 14:25:47] 
[2025-04-04 14:25:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 14:25:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 14:25:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 14:25:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 14:25:47] 
[2025-04-04 14:25:47] 2025-04-04 18:25:34,361 | INFO     | **************************************
[2025-04-04 14:25:47] 2025-04-04 18:25:34,942 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-04 14:25:47] 2025-04-04 18:25:35,085 | INFO     | sufficient remaining disk space (53616836608 B)
[2025-04-04 14:25:47] 2025-04-04 18:25:35,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 14:25:47] 2025-04-04 18:25:35,086 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 14:25:47] 2025-04-04 18:25:35,086 | INFO     | update_server=False
[2025-04-04 14:25:47] 2025-04-04 18:25:35,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 14:25:47] 2025-04-04 18:25:35,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 14:25:47] 2025-04-04 18:25:35,645 | INFO     | all payload control threads have been joined
[2025-04-04 14:25:47] 2025-04-04 18:25:35,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 14:25:47] 2025-04-04 18:25:35,760 | INFO     | aborting loop
[2025-04-04 14:25:47] 2025-04-04 18:25:35,953 | INFO     | all job control threads have been joined
[2025-04-04 14:25:47] 2025-04-04 18:25:36,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 14:25:47] 2025-04-04 18:25:36,131 | INFO     | [job] retrieve thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,285 | INFO     | all data control threads have been joined
[2025-04-04 14:25:47] 2025-04-04 18:25:36,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,592 | INFO     | [job] validate thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,598 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,651 | INFO     | [payload] control thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,766 | INFO     | [job] job monitor thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,809 | INFO     | [data] copytool_in thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:36,987 | INFO     | [job] control thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,006 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,029 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,108 | INFO     | [payload] validate_post thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,196 | INFO     | [payload] failed_post thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,391 | INFO     | [data] control thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:37,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 14:25:47] 2025-04-04 18:25:37,856 | INFO     | PID=405835 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-04 14:25:47] 2025-04-04 18:25:37,856 | INFO     | .. there are 17 such processes running
[2025-04-04 14:25:47] 2025-04-04 18:25:37,856 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 14:25:47] 2025-04-04 18:25:37,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 14:25:47] 2025-04-04 18:25:37,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 14:25:47] 2025-04-04 18:25:38,108 | INFO     | [data] copytool_out thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:38,791 | INFO     | [job] queue monitor thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:39,154 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 14:25:47] 2025-04-04 18:25:40,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466350004032)>', '<ExcThread(monitor, started 140465991034624)>']
[2025-04-04 14:25:47] 2025-04-04 18:25:40,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 14:25:47] 2025-04-04 18:25:40,911 | INFO     | [monitor] control thread has ended
[2025-04-04 14:25:47] 2025-04-04 18:25:45,391 | INFO     | all workflow threads have been joined
[2025-04-04 14:25:47] 2025-04-04 18:25:45,391 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 14:25:47] 2025-04-04 18:25:45,391 | INFO     | traces error code: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:45,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 14:25:47] 2025-04-04 18:25:46,619 [wrapper] ==== pilot stdout END ====
[2025-04-04 14:25:47] 2025-04-04 18:25:46,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 14:25:47] 2025-04-04 18:25:46,649 [wrapper] pilotpid: 405835
[2025-04-04 14:25:47] 2025-04-04 18:25:46,661 [wrapper] Pilot exit status: 0
[2025-04-04 14:25:47] 2025-04-04 18:25:46,792 [wrapper] pandaids: 6586396635
[2025-04-04 14:25:47] 2025-04-04 18:25:46,890 [wrapper] cleanup supervisor_pilot 3074505 405836
[2025-04-04 14:25:47] 2025-04-04 18:25:46,941 [wrapper] Test setup, not cleaning
[2025-04-04 14:25:47] 2025-04-04 18:25:46,962 [wrapper] apfmon messages muted
[2025-04-04 14:25:47] 2025-04-04 18:25:46,977 [wrapper] ==== wrapper stdout END ====
[2025-04-04 14:25:47] 2025-04-04 18:25:46,993 [wrapper] ==== wrapper stderr END ====
[2025-04-04 14:25:47]  *** Error codes and diagnostics ***
[2025-04-04 14:25:47]     "exeErrorCode": 0,
[2025-04-04 14:25:47]     "exeErrorDiag": "",
[2025-04-04 14:25:47]     "pilotErrorCode": 0,
[2025-04-04 14:25:47]     "pilotErrorDiag": "",
[2025-04-04 14:25:47]  *** Listing of results directory ***
[2025-04-04 14:25:47] total 678964
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas    495897 Apr  3 18:28 pilot3.tar.gz
[2025-04-04 14:25:47] -rwx------. 1 boincer umatlas     37140 Apr  3 19:00 runpilot2-wrapper.sh
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas      5111 Apr  3 19:00 queuedata.json
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas       100 Apr  4 02:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 14:25:47] -rwxr-xr-x. 1 boincer umatlas      7986 Apr  4 02:43 run_atlas
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas       105 Apr  4 02:43 job.xml
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas 361375584 Apr  4 02:43 EVNT.43634896._000686.pool.root.1
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 02:43 start_atlas.sh
[2025-04-04 14:25:47] drwxrwx--x. 2 boincer umatlas      4096 Apr  4 02:43 shared
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas    508891 Apr  4 02:43 input.tar.gz
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas         0 Apr  4 02:43 boinc_lockfile
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas      2598 Apr  4 02:43 pandaJob.out
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas       467 Apr  4 02:43 setup.sh.local
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas    979970 Apr  4 02:43 agis_schedconf.cvmfs.json
[2025-04-04 14:25:47] drwx------. 4 boincer umatlas      4096 Apr  4 02:43 pilot3
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas 322051783 Apr  4 14:19 HITS.43634898._018519.pool.root.1
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas       532 Apr  4 14:19 boinc_task_state.xml
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas      6841 Apr  4 14:22 init_data.xml
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas      1055 Apr  4 14:24 memory_monitor_summary.json
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas   1603525 Apr  4 14:24 agis_ddmendpoints.agis.ALL.json
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas    636009 Apr  4 14:24 log.43634898._018519.job.log.tgz.1
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas        95 Apr  4 14:25 pilot_heartbeat.json
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas      7753 Apr  4 14:25 heartbeat.json
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas      8192 Apr  4 14:25 boinc_mmap_file
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas        28 Apr  4 14:25 wrapper_checkpoint.txt
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas      4747 Apr  4 14:25 pilotlog.txt
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas   3360426 Apr  4 14:25 log.43634898._018519.job.log.1
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas       357 Apr  4 14:25 output.list
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas       620 Apr  4 14:25 runtime_log
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas   4014080 Apr  4 14:25 result.tar.gz
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas     11424 Apr  4 14:25 runtime_log.err
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas       664 Apr  4 14:25 ippMDmeiiK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm2AILDmncYH1m.diag
[2025-04-04 14:25:47] -rw-r--r--. 1 boincer umatlas     20959 Apr  4 14:25 stderr.txt
[2025-04-04 14:25:47] HITS file was successfully produced:
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas 322051783 Apr  4 14:19 shared/HITS.pool.root.1
[2025-04-04 14:25:47]  *** Contents of shared directory: ***
[2025-04-04 14:25:47] total 671860
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas 361375584 Apr  4 02:43 ATLAS.root_0
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas     17569 Apr  4 02:43 start_atlas.sh
[2025-04-04 14:25:47] -rw-r--r--. 2 boincer umatlas    508891 Apr  4 02:43 input.tar.gz
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas 322051783 Apr  4 14:19 HITS.pool.root.1
[2025-04-04 14:25:47] -rw-------. 1 boincer umatlas   4014080 Apr  4 14:25 result.tar.gz
14:25:49 (397354): run_atlas exited; CPU time 80383.067260
14:25:49 (397354): called boinc_finish(0)

</stderr_txt>
]]>

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