Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-05 04:04:52 (3208): Detected: vboxwrapper 26206
2025-04-05 04:04:52 (3208): Detected: BOINC client v7.16.5
2025-04-05 04:04:52 (3208): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-04-05 04:04:53 (3208): Successfully copied 'init_data.xml' to the shared directory.
2025-04-05 04:04:53 (3208): Create VM. (boinc_72612465128407b7, slot#3)
2025-04-05 04:04:54 (3208): Setting Memory Size for VM. (4400MB)
2025-04-05 04:04:54 (3208): Setting CPU Count for VM. (4)
2025-04-05 04:04:54 (3208): Setting Chipset Options for VM.
2025-04-05 04:04:54 (3208): Setting Graphics Controller Options for VM.
2025-04-05 04:04:55 (3208): Setting Boot Options for VM.
2025-04-05 04:04:55 (3208): Setting Network Configuration for NAT.
2025-04-05 04:04:55 (3208): Enabling VM Network Access.
2025-04-05 04:04:55 (3208): Disabling USB Support for VM.
2025-04-05 04:04:56 (3208): Disabling COM Port Support for VM.
2025-04-05 04:04:56 (3208): Disabling LPT Port Support for VM.
2025-04-05 04:04:56 (3208): Disabling Audio Support for VM.
2025-04-05 04:04:56 (3208): Disabling Clipboard Support for VM.
2025-04-05 04:04:57 (3208): Disabling Drag and Drop Support for VM.
2025-04-05 04:04:57 (3208): Adding storage controller(s) to VM.
2025-04-05 04:04:57 (3208): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-05 04:04:58 (3208): Adding VirtualBox Guest Additions to VM.
2025-04-05 04:04:58 (3208): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-05 04:04:58 (3208): forwarding host port 61577 to guest port 80
2025-04-05 04:04:58 (3208): Enabling remote desktop for VM.
2025-04-05 04:04:59 (3208): Enabling shared directory for VM.
2025-04-05 04:04:59 (3208): Starting VM using VBoxManage interface. (boinc_72612465128407b7, slot#3)
2025-04-05 04:05:04 (3208): Successfully started VM. (PID = '10180')
2025-04-05 04:05:04 (3208): Reporting VM Process ID to BOINC.
2025-04-05 04:05:04 (3208): Guest Log: BIOS: VirtualBox 5.2.44
2025-04-05 04:05:04 (3208): Guest Log: CPUID EDX: 0x178bfbff
2025-04-05 04:05:04 (3208): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-05 04:05:04 (3208): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-05 04:05:04 (3208): Detected: Web Application Enabled (http://localhost:61577)
2025-04-05 04:05:04 (3208): Detected: Remote Desktop Enabled (localhost:61578)
2025-04-05 04:05:04 (3208): Preference change detected
2025-04-05 04:05:04 (3208): Setting CPU throttle for VM. (100%)
2025-04-05 04:05:04 (3208): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-05 04:05:06 (3208): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-05 04:05:06 (3208): Guest Log: BIOS: Booting from Hard Disk...
2025-04-05 04:05:09 (3208): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-05 04:05:09 (3208): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-05 04:05:09 (3208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-05 04:05:15 (3208): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-05 04:05:15 (3208): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-05 04:05:21 (3208): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000194 main     Log opened 2025-04-05T04:05:19.817954000Z
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000297 main     OS Product: Linux
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000334 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000365 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000402 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000402 main     Process ID: 1303
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.000403 main     Package type: LINUX_64BITS_GENERIC
2025-04-05 04:05:21 (3208): Guest Log: 00:00:00.001256 main     5.2.32 r132073 started. Verbose level = 0
2025-04-05 04:05:21 (3208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-05 04:05:21 (3208): Guest Log: [INFO] Mounting shared directory
2025-04-05 04:05:21 (3208): Guest Log: [INFO] Checking for init_data.xml
2025-04-05 04:05:24 (3208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-05 04:05:24 (3208): Guest Log: [INFO] Detected branch: prod
2025-04-05 04:05:24 (3208): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-05 04:05:24 (3208): Guest Log: Copying input files
2025-04-05 04:05:27 (3208): Guest Log: Copied input files into RunAtlas.
2025-04-05 04:05:27 (3208): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-05 04:05:27 (3208): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-05 04:05:27 (3208): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-05 04:05:27 (3208): Guest Log: Further information can be found at the LHC@home message board.
2025-04-05 04:05:31 (3208): Guest Log: 00:00:10.006599 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 789 004 845 000ns (GuestNow=1 743 815 130 816 228 000 ns GuestLast=1 743 825 919 821 073 000 ns fSetTimeLastLoop=true )
2025-04-05 04:05:34 (3208): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-05 04:05:34 (3208): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-05 04:05:34 (3208): Guest Log: 2.6.3.0 1579 0 32232 144509 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-05 04:05:35 (3208): Guest Log: copied the webapp to /var/www
2025-04-05 04:05:35 (3208): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-05 04:05:35 (3208): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-05 04:05:35 (3208): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-05 04:05:35 (3208): Guest Log:  *** Starting ATLAS job. (PandaID=6586396592 taskID=43634898) ***
2025-04-05 05:45:10 (3208): Status Report: Elapsed Time: '6000.000000'
2025-04-05 05:45:10 (3208): Status Report: CPU Time: '17784.906250'
2025-04-05 07:25:13 (3208): Status Report: Elapsed Time: '12000.000000'
2025-04-05 07:25:13 (3208): Status Report: CPU Time: '27591.671875'
2025-04-05 09:05:16 (3208): Status Report: Elapsed Time: '18000.000000'
2025-04-05 09:05:16 (3208): Status Report: CPU Time: '38912.781250'
2025-04-05 10:45:19 (3208): Status Report: Elapsed Time: '24000.000000'
2025-04-05 10:45:19 (3208): Status Report: CPU Time: '58335.953125'
2025-04-05 12:25:22 (3208): Status Report: Elapsed Time: '30000.000000'
2025-04-05 12:25:22 (3208): Status Report: CPU Time: '75505.734375'
2025-04-05 13:22:50 (3208): Guest Log:  *** Job finished ***
2025-04-05 13:22:50 (3208): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:36,123 | INFO     | [data] copytool_out thread has finished
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:36,180 | INFO     | [job] queue monitor thread has finished
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:40,113 | INFO     | [data] queue_monitor thread has finished
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:42,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320473450304)>', '<ExcThread(monitor, started 140320020862720)>']
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:42,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:42,542 | INFO     | [monitor] control thread has ended
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,132 | INFO     | all workflow threads have been joined
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,132 | INFO     | end of generic workflow (traces error code: 0)
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,132 | INFO     | traces error code: 0
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,398 [wrapper] ==== pilot stdout END ====
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,469 [wrapper] ==== wrapper stdout RESUME ====
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,546 [wrapper] pilotpid: 5887
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,605 [wrapper] Pilot exit status: 0
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:47,842 [wrapper] pandaids: 6586396592
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:48,081 [wrapper] cleanup supervisor_pilot  8186 5888
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:48,133 [wrapper] Test setup, not cleaning
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:48,237 [wrapper] apfmon messages muted
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:48,335 [wrapper] ==== wrapper stdout END ====
2025-04-05 13:22:50 (3208): Guest Log: 2025-04-05 10:22:48,368 [wrapper] ==== wrapper stderr END ====
2025-04-05 13:22:50 (3208): Guest Log:  *** Error codes and diagnostics ***
2025-04-05 13:22:50 (3208): Guest Log:     "exeErrorCode": 0,
2025-04-05 13:22:50 (3208): Guest Log:     "exeErrorDiag": "",
2025-04-05 13:22:50 (3208): Guest Log:     "pilotErrorCode": 0,
2025-04-05 13:22:50 (3208): Guest Log:     "pilotErrorDiag": "",
2025-04-05 13:22:50 (3208): Guest Log:  *** Listing of results directory ***
2025-04-05 13:22:50 (3208): Guest Log: total 324224
2025-04-05 13:22:50 (3208): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 22:28 pilot3.tar.gz
2025-04-05 13:22:50 (3208): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 22:54 runpilot2-wrapper.sh
2025-04-05 13:22:50 (3208): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 22:54 queuedata.json
2025-04-05 13:22:50 (3208): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Apr  5 01:05 init_data.xml
2025-04-05 13:22:50 (3208): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Apr  5 01:05 input.tar.gz
2025-04-05 13:22:50 (3208): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  5 01:05 start_atlas.sh
2025-04-05 13:22:50 (3208): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  5 01:05 EVNT.43634896._000684.pool.root.1 -> /data/./ATLAS.root_0
2025-04-05 13:22:50 (3208): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr  5 01:05 pandaJob.out
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas       424 Apr  5 01:05 setup.sh.local
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas    979979 Apr  5 01:06 agis_schedconf.cvmfs.json
2025-04-05 13:22:50 (3208): Guest Log: drwx------. 4 atlas atlas      4096 Apr  5 01:06 pilot3
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas 322246044 Apr  5 10:20 HITS.43634898._018476.pool.root.1
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas      1032 Apr  5 10:21 memory_monitor_summary.json
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  5 10:21 agis_ddmendpoints.agis.ALL.json
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas    470908 Apr  5 10:21 log.43634898._018476.job.log.tgz.1
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas        95 Apr  5 10:22 pilot_heartbeat.json
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas      7730 Apr  5 10:22 heartbeat.json
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas      4413 Apr  5 10:22 pilotlog.txt
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas   2523828 Apr  5 10:22 log.43634898._018476.job.log.1
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas       357 Apr  5 10:22 output.list
2025-04-05 13:22:50 (3208): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  5 10:22 runtime_log
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas   3010560 Apr  5 10:22 result.tar.gz
2025-04-05 13:22:50 (3208): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr  5 10:22 runtime_log.err
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas       673 Apr  5 10:22 d8IMDmDdiK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm0MtKDmB2HWUn.diag
2025-04-05 13:22:50 (3208): Guest Log: Looking for outputfile HITS.43634898._018476.pool.root.1
2025-04-05 13:22:50 (3208): Guest Log: HITS file was successfully produced
2025-04-05 13:22:50 (3208): Guest Log: -rw-------. 1 atlas atlas 322246044 Apr  5 10:20 /home/atlas/RunAtlas/HITS.43634898._018476.pool.root.1
2025-04-05 13:22:53 (3208): Guest Log: Successfully finished the ATLAS job!
2025-04-05 13:22:53 (3208): Guest Log: Copying the results back to the shared directory!
2025-04-05 13:22:53 (3208): Guest Log:  *** Contents of shared directory: ***
2025-04-05 13:22:53 (3208): Guest Log: total 670948
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root 361244467 Apr  5 01:04 ATLAS.root_0
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root 322246044 Apr  5 10:22 HITS.pool.root.1
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root      8857 Apr  5 01:04 init_data.xml
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root    508885 Apr  4 03:05 input.tar.gz
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root   3010560 Apr  5 10:22 result.tar.gz
2025-04-05 13:22:53 (3208): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 03:05 start_atlas.sh
2025-04-05 13:22:53 (3208): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-05 13:22:53 (3208): VM Completion File Detected.
2025-04-05 13:22:53 (3208): Powering off VM.
2025-04-05 13:22:54 (3208): Successfully stopped VM.
2025-04-05 13:22:54 (3208): Deregistering VM. (boinc_72612465128407b7, slot#3)
2025-04-05 13:22:54 (3208): Removing network bandwidth throttle group from VM.
2025-04-05 13:22:54 (3208): Removing VM from VirtualBox.
13:22:59 (3208): called boinc_finish(0)

</stderr_txt>
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