Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-04 20:44:15 (17516): Detected: vboxwrapper 26206
2025-04-04 20:44:15 (17516): Detected: BOINC client v7.16.5
2025-04-04 20:44:16 (17516): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-04-04 20:44:16 (17516): Successfully copied 'init_data.xml' to the shared directory.
2025-04-04 20:44:16 (17516): Create VM. (boinc_3d1104c2960e4c87, slot#3)
2025-04-04 20:44:17 (17516): Setting Memory Size for VM. (4400MB)
2025-04-04 20:44:17 (17516): Setting CPU Count for VM. (4)
2025-04-04 20:44:17 (17516): Setting Chipset Options for VM.
2025-04-04 20:44:18 (17516): Setting Graphics Controller Options for VM.
2025-04-04 20:44:18 (17516): Setting Boot Options for VM.
2025-04-04 20:44:18 (17516): Setting Network Configuration for NAT.
2025-04-04 20:44:18 (17516): Enabling VM Network Access.
2025-04-04 20:44:19 (17516): Disabling USB Support for VM.
2025-04-04 20:44:19 (17516): Disabling COM Port Support for VM.
2025-04-04 20:44:19 (17516): Disabling LPT Port Support for VM.
2025-04-04 20:44:19 (17516): Disabling Audio Support for VM.
2025-04-04 20:44:20 (17516): Disabling Clipboard Support for VM.
2025-04-04 20:44:20 (17516): Disabling Drag and Drop Support for VM.
2025-04-04 20:44:20 (17516): Adding storage controller(s) to VM.
2025-04-04 20:44:20 (17516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-04 20:44:21 (17516): Adding VirtualBox Guest Additions to VM.
2025-04-04 20:44:21 (17516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-04 20:44:21 (17516): forwarding host port 58660 to guest port 80
2025-04-04 20:44:22 (17516): Enabling remote desktop for VM.
2025-04-04 20:44:22 (17516): Enabling shared directory for VM.
2025-04-04 20:44:23 (17516): Starting VM using VBoxManage interface. (boinc_3d1104c2960e4c87, slot#3)
2025-04-04 20:44:27 (17516): Successfully started VM. (PID = '14052')
2025-04-04 20:44:27 (17516): Reporting VM Process ID to BOINC.
2025-04-04 20:44:27 (17516): Guest Log: BIOS: VirtualBox 5.2.44
2025-04-04 20:44:27 (17516): Guest Log: CPUID EDX: 0x178bfbff
2025-04-04 20:44:27 (17516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-04 20:44:27 (17516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-04 20:44:27 (17516): Detected: Web Application Enabled (http://localhost:58660)
2025-04-04 20:44:27 (17516): Detected: Remote Desktop Enabled (localhost:58661)
2025-04-04 20:44:27 (17516): Preference change detected
2025-04-04 20:44:27 (17516): Setting CPU throttle for VM. (100%)
2025-04-04 20:44:28 (17516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-04 20:44:29 (17516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-04 20:44:29 (17516): Guest Log: BIOS: Booting from Hard Disk...
2025-04-04 20:44:32 (17516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-04 20:44:32 (17516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-04 20:44:32 (17516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-04 20:44:38 (17516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-04 20:44:38 (17516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-04 20:44:44 (17516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000187 main     Log opened 2025-04-04T20:44:42.910177000Z
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000294 main     OS Product: Linux
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000333 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000364 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000426 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000427 main     Process ID: 1303
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.000428 main     Package type: LINUX_64BITS_GENERIC
2025-04-04 20:44:44 (17516): Guest Log: 00:00:00.001428 main     5.2.32 r132073 started. Verbose level = 0
2025-04-04 20:44:44 (17516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-04 20:44:44 (17516): Guest Log: [INFO] Mounting shared directory
2025-04-04 20:44:44 (17516): Guest Log: [INFO] Checking for init_data.xml
2025-04-04 20:44:47 (17516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-04 20:44:47 (17516): Guest Log: [INFO] Detected branch: prod
2025-04-04 20:44:47 (17516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-04 20:44:47 (17516): Guest Log: Copying input files
2025-04-04 20:44:51 (17516): Guest Log: Copied input files into RunAtlas.
2025-04-04 20:44:51 (17516): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-04 20:44:51 (17516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-04 20:44:51 (17516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-04 20:44:51 (17516): Guest Log: Further information can be found at the LHC@home message board.
2025-04-04 20:44:54 (17516): Guest Log: 00:00:10.003409 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 302 038 000ns (GuestNow=1 743 788 694 611 159 000 ns GuestLast=1 743 799 482 913 197 000 ns fSetTimeLastLoop=true )
2025-04-04 20:44:58 (17516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-04 20:44:59 (17516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-04 20:44:59 (17516): Guest Log: 2.6.3.0 1578 0 32032 144497 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-04 20:44:59 (17516): Guest Log: copied the webapp to /var/www
2025-04-04 20:44:59 (17516): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-04 20:44:59 (17516): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-04 20:45:00 (17516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-04 20:45:00 (17516): Guest Log:  *** Starting ATLAS job. (PandaID=6586323591 taskID=43634898) ***
2025-04-04 22:24:31 (17516): Status Report: Elapsed Time: '6000.000000'
2025-04-04 22:24:31 (17516): Status Report: CPU Time: '18768.421875'
2025-04-05 00:04:34 (17516): Status Report: Elapsed Time: '12000.000000'
2025-04-05 00:04:34 (17516): Status Report: CPU Time: '42465.828125'
2025-04-05 01:44:38 (17516): Status Report: Elapsed Time: '18000.000000'
2025-04-05 01:44:38 (17516): Status Report: CPU Time: '62190.671875'
2025-04-05 03:24:41 (17516): Status Report: Elapsed Time: '24000.000000'
2025-04-05 03:24:41 (17516): Status Report: CPU Time: '78590.453125'
2025-04-05 04:04:38 (17516): Guest Log:  *** Job finished ***
2025-04-05 04:04:38 (17516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:22,642 | INFO     | [data] queue_monitor thread has finished
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:29,538 | INFO     | job.realtimelogging is not enabled
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:30,541 | INFO     | [payload] run_realtimelog thread has finished
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:30,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337141212992)>', '<ExcThread(monitor, started 140336697431808)>']
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:31,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:31,233 | INFO     | [monitor] control thread has ended
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:35,980 | INFO     | all workflow threads have been joined
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:35,980 | INFO     | end of generic workflow (traces error code: 0)
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:35,980 | INFO     | traces error code: 0
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:35,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,164 [wrapper] ==== pilot stdout END ====
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,206 [wrapper] ==== wrapper stdout RESUME ====
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,426 [wrapper] pilotpid: 5902
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,447 [wrapper] Pilot exit status: 0
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,617 [wrapper] pandaids: 6586323591
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,898 [wrapper] cleanup supervisor_pilot 29845 5903
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,944 [wrapper] Test setup, not cleaning
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,970 [wrapper] apfmon messages muted
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:36,987 [wrapper] ==== wrapper stdout END ====
2025-04-05 04:04:38 (17516): Guest Log: 2025-04-05 01:04:37,069 [wrapper] ==== wrapper stderr END ====
2025-04-05 04:04:38 (17516): Guest Log:  *** Error codes and diagnostics ***
2025-04-05 04:04:38 (17516): Guest Log:     "exeErrorCode": 0,
2025-04-05 04:04:38 (17516): Guest Log:     "exeErrorDiag": "",
2025-04-05 04:04:38 (17516): Guest Log:     "pilotErrorCode": 0,
2025-04-05 04:04:38 (17516): Guest Log:     "pilotErrorDiag": "",
2025-04-05 04:04:38 (17516): Guest Log:  *** Listing of results directory ***
2025-04-05 04:04:38 (17516): Guest Log: total 321968
2025-04-05 04:04:38 (17516): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 20:23 pilot3.tar.gz
2025-04-05 04:04:38 (17516): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 20:34 queuedata.json
2025-04-05 04:04:38 (17516): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 20:35 runpilot2-wrapper.sh
2025-04-05 04:04:38 (17516): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Apr  4 17:44 init_data.xml
2025-04-05 04:04:38 (17516): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr  4 17:44 input.tar.gz
2025-04-05 04:04:38 (17516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  4 17:44 start_atlas.sh
2025-04-05 04:04:38 (17516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 17:44 EVNT.43634896._000670.pool.root.1 -> /data/./ATLAS.root_0
2025-04-05 04:04:38 (17516): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr  4 17:45 pandaJob.out
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 17:45 setup.sh.local
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas    979987 Apr  4 17:45 agis_schedconf.cvmfs.json
2025-04-05 04:04:38 (17516): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 17:45 pilot3
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas 320811821 Apr  5 01:02 HITS.43634898._017491.pool.root.1
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas      1032 Apr  5 01:03 memory_monitor_summary.json
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  5 01:03 agis_ddmendpoints.agis.ALL.json
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas    426816 Apr  5 01:03 log.43634898._017491.job.log.tgz.1
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas        95 Apr  5 01:03 pilot_heartbeat.json
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas      7729 Apr  5 01:04 heartbeat.json
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas      4485 Apr  5 01:04 pilotlog.txt
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas   2128970 Apr  5 01:04 log.43634898._017491.job.log.1
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas       357 Apr  5 01:04 output.list
2025-04-05 04:04:38 (17516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  5 01:04 runtime_log
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas   2570240 Apr  5 01:04 result.tar.gz
2025-04-05 04:04:38 (17516): Guest Log: -rw-r--r--. 1 atlas atlas     10981 Apr  5 01:04 runtime_log.err
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas       672 Apr  5 01:04 bwWLDmSSgK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmcyHLDmPbHhGn.diag
2025-04-05 04:04:38 (17516): Guest Log: Looking for outputfile HITS.43634898._017491.pool.root.1
2025-04-05 04:04:38 (17516): Guest Log: HITS file was successfully produced
2025-04-05 04:04:38 (17516): Guest Log: -rw-------. 1 atlas atlas 320811821 Apr  5 01:02 /home/atlas/RunAtlas/HITS.43634898._017491.pool.root.1
2025-04-05 04:04:40 (17516): Guest Log: Successfully finished the ATLAS job!
2025-04-05 04:04:40 (17516): Guest Log: Copying the results back to the shared directory!
2025-04-05 04:04:41 (17516): Guest Log:  *** Contents of shared directory: ***
2025-04-05 04:04:41 (17516): Guest Log: total 670512
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root 362670440 Apr  4 17:44 ATLAS.root_0
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root 320811821 Apr  5 01:04 HITS.pool.root.1
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root      8857 Apr  4 17:44 init_data.xml
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr  4 00:45 input.tar.gz
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root   2570240 Apr  5 01:04 result.tar.gz
2025-04-05 04:04:41 (17516): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 00:45 start_atlas.sh
2025-04-05 04:04:41 (17516): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-05 04:04:41 (17516): VM Completion File Detected.
2025-04-05 04:04:41 (17516): Powering off VM.
2025-04-05 04:04:42 (17516): Successfully stopped VM.
2025-04-05 04:04:42 (17516): Deregistering VM. (boinc_3d1104c2960e4c87, slot#3)
2025-04-05 04:04:42 (17516): Removing network bandwidth throttle group from VM.
2025-04-05 04:04:42 (17516): Removing VM from VirtualBox.
04:04:48 (17516): called boinc_finish(0)

</stderr_txt>
]]>

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