Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:49 (15936): wrapper (7.7.26015): starting
04:04:49 (15936): wrapper: running run_atlas (--nthreads 12)
[2025-04-04 04:04:49] Arguments: --nthreads 12
[2025-04-04 04:04:49] Threads: 12
[2025-04-04 04:04:49] Checking for CVMFS
[2025-04-04 04:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 04:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 04:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 04:04:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 04:04:50] 2.11.2.0 15118 5122 98188 144471 1 185 24647435 25165825 0 130560 0 40555098 99.999 1339479 12309 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-04-04 04:04:50] CVMFS is ok
[2025-04-04 04:04:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 04:04:50] Checking for apptainer binary...
[2025-04-04 04:04:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 04:04:50] Running /usr/bin/apptainer --version
[2025-04-04 04:04:50] apptainer version 1.3.2-1.el7
[2025-04-04 04:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 04:04:54] cg-vwn116.simple-grid.lan
[2025-04-04 04:04:54] apptainer works
[2025-04-04 04:04:54] Set ATHENA_PROC_NUMBER=12
[2025-04-04 04:04:54] Set ATHENA_CORE_NUMBER=12
[2025-04-04 04:04:54] Starting ATLAS job with PandaID=6586322149
[2025-04-04 04:04:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 04:13:53]  *** The last 200 lines of the pilot log: ***
[2025-04-04 04:13:53] 2025-04-04 02:13:38,795 | INFO     | monitor loop #148: job 0:6586322149 is in state 'failed'
[2025-04-04 04:13:53] 2025-04-04 02:13:38,796 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,437 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/memory_monitor_output.txt
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | INFO     | memory summary dictionary not yet available
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 04:13:53] 2025-04-04 02:13:40,442 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . Timing measurements:
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . get job = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . initial setup = 2 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload setup = 23 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . stage-in = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload execution = 221 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . stage-out = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . log creation = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 04:13:53] 2025-04-04 02:13:40,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/pilotlog.txt
[2025-04-04 04:13:53] 2025-04-04 02:13:40,506 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-04 04:13:53] - Log from pilotlog.txt -
[2025-04-04 04:13:53] 2025-04-04 02:13:37,744 | INFO     | PID=19605 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-04 04:13:53] 2025-04-04 02:13:38,795 | INFO     | monitor loop #148: job 0:6586322149 is in state 'failed'
[2025-04-04 04:13:53] 2025-04-04 02:13:38,796 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,437 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/memory_monitor_output.txt
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | INFO     | memory summary dictionary not yet available
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 04:13:53] 2025-04-04 02:13:40,442 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . Timing measurements:
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . get job = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . initial setup = 2 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload setup = 23 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . stage-in = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload execution = 221 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . stage-out = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . log creation = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 04:13:53] 2025-04-04 02:13:40,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/pilotlog.txt
[2025-04-04 04:13:53] 2025-04-04 02:13:40,507 | WARNING  | 
[2025-04-04 04:13:53] [begin log extracts]
[2025-04-04 04:13:53] - Log from pilotlog.txt -
[2025-04-04 04:13:53] 2025-04-04 02:13:37,744 | INFO     | PID=19605 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-04 04:13:53] 2025-04-04 02:13:38,795 | INFO     | monitor loop #148: job 0:6586322149 is in state 'failed'
[2025-04-04 04:13:53] 2025-04-04 02:13:38,796 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,437 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/memory_monitor_output.txt
[2025-04-04 04:13:53] 2025-04-04 02:13:40,439 | INFO     | memory summary dictionary not yet available
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 04:13:53] 2025-04-04 02:13:40,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 04:13:53] 2025-04-04 02:13:40,442 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . Timing measurements:
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . get job = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,443 | INFO     | . initial setup = 2 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload setup = 23 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . stage-in = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,444 | INFO     | . payload execution = 221 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . stage-out = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | . log creation = 0 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,445 | INFO     | ..............................
[2025-04-04 04:13:53] 2025-04-04 02:13:40,446 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 04:13:53] 2025-04-04 02:13:40,447 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586322149/pilotlog.txt
[2025-04-04 04:13:53] [end log extracts]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,508 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,510 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-04 04:13:53] 2025-04-04 02:13:40,693 | INFO     | 
[2025-04-04 04:13:53] 2025-04-04 02:13:40,694 | INFO     | job summary report
[2025-04-04 04:13:53] 2025-04-04 02:13:40,694 | INFO     | --------------------------------------------------
[2025-04-04 04:13:53] 2025-04-04 02:13:40,694 | INFO     | PanDA job id: 6586322149
[2025-04-04 04:13:53] 2025-04-04 02:13:40,695 | INFO     | task id: 43634898
[2025-04-04 04:13:53] 2025-04-04 02:13:40,695 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-04 02:10:04,428 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-04 04:13:53] 2025-04-04 02:13:40,695 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 04:13:53] 2025-04-04 02:13:40,696 | INFO     | pilot state: failed 
[2025-04-04 04:13:53] 2025-04-04 02:13:40,696 | INFO     | transexitcode: 65
[2025-04-04 04:13:53] 2025-04-04 02:13:40,697 | INFO     | exeerrorcode: 65
[2025-04-04 04:13:53] 2025-04-04 02:13:40,697 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,698 | INFO     | exitcode: 65
[2025-04-04 04:13:53] 2025-04-04 02:13:40,698 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,698 | INFO     | cpuconsumptiontime: 247 s
[2025-04-04 04:13:53] 2025-04-04 02:13:40,699 | INFO     | nevents: 0
[2025-04-04 04:13:53] 2025-04-04 02:13:40,699 | INFO     | neventsw: 0
[2025-04-04 04:13:53] 2025-04-04 02:13:40,699 | INFO     | pid: 26048
[2025-04-04 04:13:53] 2025-04-04 02:13:40,700 | INFO     | pgrp: 26048
[2025-04-04 04:13:53] 2025-04-04 02:13:40,700 | INFO     | corecount: 12
[2025-04-04 04:13:53] 2025-04-04 02:13:40,700 | INFO     | event service: False
[2025-04-04 04:13:53] 2025-04-04 02:13:40,701 | INFO     | sizes: {0: 2416571, 1: 2417256, 2: 2417455, 13: 2417455, 16: 2417717, 24: 2417745, 309: 2441257, 310: 2445495, 311: 2445551, 455: 2445721}
[2025-04-04 04:13:53] 2025-04-04 02:13:40,701 | INFO     | --------------------------------------------------
[2025-04-04 04:13:53] 2025-04-04 02:13:40,701 | INFO     | 
[2025-04-04 04:13:53] 2025-04-04 02:13:40,702 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-04-04 04:13:53] 2025-04-04 02:13:40,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,788 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,788 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 04:13:53] 2025-04-04 02:13:40,795 | INFO     | job 6586322149 has completed (purged errors)
[2025-04-04 04:13:53] 2025-04-04 02:13:40,796 | INFO     | overall cleanup function is called
[2025-04-04 04:13:53] 2025-04-04 02:13:41,806 | INFO     | --- collectZombieJob: --- 10, [26048]
[2025-04-04 04:13:53] 2025-04-04 02:13:41,807 | INFO     | zombie collector waiting for pid 26048
[2025-04-04 04:13:53] 2025-04-04 02:13:41,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 04:13:53] 2025-04-04 02:13:41,808 | INFO     | collected zombie processes
[2025-04-04 04:13:53] 2025-04-04 02:13:41,808 | INFO     | will attempt to kill all subprocesses of pid=26048
[2025-04-04 04:13:53] 2025-04-04 02:13:41,970 | INFO     | process IDs to be killed: [26048] (in reverse order)
[2025-04-04 04:13:53] 2025-04-04 02:13:42,108 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 04:13:53] 2025-04-04 02:13:42,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 04:13:53] 2025-04-04 02:13:42,116 | INFO     | did not find any defunct processes belonging to 26048
[2025-04-04 04:13:53] 2025-04-04 02:13:42,122 | INFO     | did not find any defunct processes belonging to 26048
[2025-04-04 04:13:53] 2025-04-04 02:13:42,123 | INFO     | ready for new job
[2025-04-04 04:13:53] 2025-04-04 02:13:42,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 04:13:53] 2025-04-04 02:13:42,128 | INFO     | **************************************
[2025-04-04 04:13:53] 2025-04-04 02:13:42,128 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 04:13:53] 2025-04-04 02:13:42,129 | INFO     | **************************************
[2025-04-04 04:13:53] 2025-04-04 02:13:42,129 | INFO     | 
[2025-04-04 04:13:53] 2025-04-04 02:13:42,131 | INFO     | pilot is running in a VM
[2025-04-04 04:13:53] 2025-04-04 02:13:42,131 | INFO     | architecture information:
[2025-04-04 04:13:53] 2025-04-04 02:13:42,133 | INFO     | executing command: cat /etc/os-release
[2025-04-04 04:13:53] 2025-04-04 02:13:42,197 | INFO     | cat /etc/os-release:
[2025-04-04 04:13:53] NAME="CentOS Linux"
[2025-04-04 04:13:53] VERSION="7 (Core)"
[2025-04-04 04:13:53] ID="centos"
[2025-04-04 04:13:53] ID_LIKE="rhel fedora"
[2025-04-04 04:13:53] VERSION_ID="7"
[2025-04-04 04:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 04:13:53] ANSI_COLOR="0;31"
[2025-04-04 04:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 04:13:53] HOME_URL="https://www.centos.org/"
[2025-04-04 04:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 04:13:53] 
[2025-04-04 04:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 04:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 04:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 04:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 04:13:53] 
[2025-04-04 04:13:53] 2025-04-04 02:13:42,198 | INFO     | **************************************
[2025-04-04 04:13:53] 2025-04-04 02:13:42,702 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-04-04 04:13:53] 2025-04-04 02:13:42,767 | INFO     | sufficient remaining disk space (258055602176 B)
[2025-04-04 04:13:53] 2025-04-04 02:13:42,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 04:13:53] 2025-04-04 02:13:42,769 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 04:13:53] 2025-04-04 02:13:42,769 | INFO     | update_server=False
[2025-04-04 04:13:53] 2025-04-04 02:13:42,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 04:13:53] 2025-04-04 02:13:42,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 04:13:53] 2025-04-04 02:13:42,771 | INFO     | aborting loop
[2025-04-04 04:13:53] 2025-04-04 02:13:42,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 04:13:53] 2025-04-04 02:13:43,319 | INFO     | all data control threads have been joined
[2025-04-04 04:13:53] 2025-04-04 02:13:43,722 | INFO     | all job control threads have been joined
[2025-04-04 04:13:53] 2025-04-04 02:13:43,763 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 04:13:53] 2025-04-04 02:13:43,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 04:13:53] 2025-04-04 02:13:43,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 04:13:53] 2025-04-04 02:13:43,776 | INFO     | [job] retrieve thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:43,777 | INFO     | [job] job monitor thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:43,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:43,924 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 04:13:53] 2025-04-04 02:13:44,033 | INFO     | all payload control threads have been joined
[2025-04-04 04:13:53] 2025-04-04 02:13:44,264 | INFO     | [payload] validate_post thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,322 | INFO     | [job] validate thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,325 | INFO     | [data] control thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,592 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,728 | INFO     | [job] control thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,865 | INFO     | [data] copytool_in thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:44,893 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:45,039 | INFO     | [payload] control thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:45,165 | INFO     | [payload] failed_post thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:45,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 04:13:53] 2025-04-04 02:13:46,012 | INFO     | [data] copytool_out thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:46,711 | INFO     | [job] queue monitor thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:46,805 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 04:13:53] 2025-04-04 02:13:48,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305901217600)>', '<ExcThread(monitor, started 140305206589184)>']
[2025-04-04 04:13:53] 2025-04-04 02:13:48,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 04:13:53] 2025-04-04 02:13:48,792 | INFO     | [monitor] control thread has ended
[2025-04-04 04:13:53] 2025-04-04 02:13:53,075 | INFO     | all workflow threads have been joined
[2025-04-04 04:13:53] 2025-04-04 02:13:53,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 04:13:53] 2025-04-04 02:13:53,076 | INFO     | traces error code: 0
[2025-04-04 04:13:53] 2025-04-04 02:13:53,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 04:13:53] 2025-04-04 02:13:53,342 [wrapper] ==== pilot stdout END ====
[2025-04-04 04:13:53] 2025-04-04 02:13:53,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 04:13:53] 2025-04-04 02:13:53,367 [wrapper] pilotpid: 19605
[2025-04-04 04:13:53] 2025-04-04 02:13:53,378 [wrapper] Pilot exit status: 0
[2025-04-04 04:13:53] 2025-04-04 02:13:53,423 [wrapper] pandaids: 6586322149
[2025-04-04 04:13:53] 2025-04-04 02:13:53,514 [wrapper] cleanup supervisor_pilot 19611 19606
[2025-04-04 04:13:53] 2025-04-04 02:13:53,527 [wrapper] Test setup, not cleaning
[2025-04-04 04:13:53] 2025-04-04 02:13:53,539 [wrapper] apfmon messages muted
[2025-04-04 04:13:53] 2025-04-04 02:13:53,551 [wrapper] ==== wrapper stdout END ====
[2025-04-04 04:13:53] 2025-04-04 02:13:53,563 [wrapper] ==== wrapper stderr END ====
[2025-04-04 04:13:53]  *** Error codes and diagnostics ***
[2025-04-04 04:13:53]     "exeErrorCode": 65,
[2025-04-04 04:13:53]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-04-04 04:13:53]     "pilotErrorCode": 1305,
[2025-04-04 04:13:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-04-04 04:13:53]  *** Listing of results directory ***
[2025-04-04 04:13:53] total 355800
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc    495897 Apr  3 21:25 pilot3.tar.gz
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc      5111 Apr  3 21:38 queuedata.json
[2025-04-04 04:13:53] -rwx------. 1 boinc boinc     37140 Apr  3 21:38 runpilot2-wrapper.sh
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc       100 Apr  4 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 04:13:53] -rwxr-xr-x. 1 boinc boinc      7986 Apr  4 04:04 run_atlas
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc       105 Apr  4 04:04 job.xml
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc 360127746 Apr  4 04:04 EVNT.43634896._000628.pool.root.1
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc      6072 Apr  4 04:04 init_data.xml
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc     17569 Apr  4 04:04 start_atlas.sh
[2025-04-04 04:13:53] drwxrwx--x. 2 boinc boinc        68 Apr  4 04:04 shared
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc    508890 Apr  4 04:04 input.tar.gz
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc         0 Apr  4 04:04 boinc_lockfile
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc      2599 Apr  4 04:04 pandaJob.out
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc       424 Apr  4 04:04 setup.sh.local
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc    979994 Apr  4 04:05 agis_schedconf.cvmfs.json
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc   1603525 Apr  4 04:05 agis_ddmendpoints.agis.ALL.json
[2025-04-04 04:13:53] drwx------. 4 boinc boinc      4096 Apr  4 04:05 pilot3
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc       525 Apr  4 04:09 boinc_task_state.xml
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc     47908 Apr  4 04:11 log.43634898._017073.job.log.tgz.1
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc        95 Apr  4 04:13 pilot_heartbeat.json
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc      8192 Apr  4 04:13 boinc_mmap_file
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc        24 Apr  4 04:13 wrapper_checkpoint.txt
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc      8013 Apr  4 04:13 heartbeat.json
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc      4416 Apr  4 04:13 pilotlog.txt
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc    150127 Apr  4 04:13 log.43634898._017073.job.log.1
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc       188 Apr  4 04:13 output.list
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc       620 Apr  4 04:13 runtime_log
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc    215040 Apr  4 04:13 result.tar.gz
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc     10861 Apr  4 04:13 runtime_log.err
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc       639 Apr  4 04:13 4XGKDm1ZfK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmFGtKDmFMJtTn.diag
[2025-04-04 04:13:53] -rw-r--r--. 1 boinc boinc     21630 Apr  4 04:13 stderr.txt
[2025-04-04 04:13:53] No HITS result produced
[2025-04-04 04:13:53]  *** Contents of shared directory: ***
[2025-04-04 04:13:53] total 352420
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc 360127746 Apr  4 04:04 ATLAS.root_0
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc     17569 Apr  4 04:04 start_atlas.sh
[2025-04-04 04:13:53] -rw-r--r--. 2 boinc boinc    508890 Apr  4 04:04 input.tar.gz
[2025-04-04 04:13:53] -rw-------. 1 boinc boinc    215040 Apr  4 04:13 result.tar.gz
04:13:55 (15936): run_atlas exited; CPU time 197.364212
04:13:55 (15936): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN