Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 21:54:18 (6208): Detected: vboxwrapper 26206
2025-04-03 21:54:18 (6208): Detected: BOINC client v8.0.2
2025-04-03 21:54:19 (6208): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-03 21:54:19 (6208): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 21:54:19 (6208): Create VM. (boinc_ee2305e9fcfa50e7, slot#5)
2025-04-03 21:54:20 (6208): Setting Memory Size for VM. (4400MB)
2025-04-03 21:54:20 (6208): Setting CPU Count for VM. (4)
2025-04-03 21:54:20 (6208): Setting Chipset Options for VM.
2025-04-03 21:54:21 (6208): Setting Graphics Controller Options for VM.
2025-04-03 21:54:21 (6208): Setting Boot Options for VM.
2025-04-03 21:54:21 (6208): Setting Network Configuration for NAT.
2025-04-03 21:54:21 (6208): Enabling VM Network Access.
2025-04-03 21:54:22 (6208): Disabling USB Support for VM.
2025-04-03 21:54:22 (6208): Disabling COM Port Support for VM.
2025-04-03 21:54:22 (6208): Disabling LPT Port Support for VM.
2025-04-03 21:54:22 (6208): Disabling Audio Support for VM.
2025-04-03 21:54:23 (6208): Disabling Clipboard Support for VM.
2025-04-03 21:54:23 (6208): Disabling Drag and Drop Support for VM.
2025-04-03 21:54:23 (6208): Adding storage controller(s) to VM.
2025-04-03 21:54:23 (6208): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 21:54:24 (6208): Adding VirtualBox Guest Additions to VM.
2025-04-03 21:54:24 (6208): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 21:54:25 (6208): forwarding host port 60402 to guest port 80
2025-04-03 21:54:25 (6208): Enabling remote desktop for VM.
2025-04-03 21:54:25 (6208): Required extension pack not installed, remote desktop not enabled.
2025-04-03 21:54:25 (6208): Enabling shared directory for VM.
2025-04-03 21:54:26 (6208): Starting VM using VBoxManage interface. (boinc_ee2305e9fcfa50e7, slot#5)
2025-04-03 21:54:30 (6208): Successfully started VM. (PID = '1776')
2025-04-03 21:54:30 (6208): Reporting VM Process ID to BOINC.
2025-04-03 21:54:30 (6208): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-03 21:54:30 (6208): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 21:54:30 (6208): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 21:54:30 (6208): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 21:54:30 (6208): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 21:54:30 (6208): Detected: Web Application Enabled (http://localhost:60402)
2025-04-03 21:54:30 (6208): Preference change detected
2025-04-03 21:54:30 (6208): Setting CPU throttle for VM. (100%)
2025-04-03 21:54:31 (6208): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 21:54:32 (6208): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 21:54:32 (6208): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 21:54:35 (6208): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 21:54:35 (6208): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 21:54:35 (6208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 21:54:39 (6208): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 21:54:39 (6208): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 21:54:44 (6208): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000116 main     Log opened 2025-04-03T21:54:42.022980000Z
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000211 main     OS Product: Linux
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000239 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000261 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000282 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000282 main     Process ID: 1311
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000283 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 21:54:44 (6208): Guest Log: 00:00:00.000980 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 21:54:44 (6208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 21:54:44 (6208): Guest Log: [INFO] Mounting shared directory
2025-04-03 21:54:44 (6208): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 21:54:54 (6208): Guest Log: 00:00:10.003569 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 057 229 000ns (GuestNow=1 743 735 294 083 314 000 ns GuestLast=1 743 717 282 026 085 000 ns fSetTimeLastLoop=true )
2025-04-03 21:54:55 (6208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 21:54:55 (6208): Guest Log: [INFO] Detected branch: prod
2025-04-03 21:54:55 (6208): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 21:54:55 (6208): Guest Log: Copying input files
2025-04-03 21:54:57 (6208): Guest Log: Copied input files into RunAtlas.
2025-04-03 21:54:57 (6208): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 21:54:57 (6208): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 21:54:57 (6208): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 21:54:57 (6208): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 21:56:01 (6208): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 21:56:01 (6208): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 21:56:01 (6208): Guest Log: 2.6.3.0 1594 1 30164 144473 4 1 3117321 4096000 0 65024 0 0 n/a 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 21:56:03 (6208): Guest Log: copied the webapp to /var/www
2025-04-03 21:56:03 (6208): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-03 21:56:03 (6208): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-03 21:56:04 (6208): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 21:56:04 (6208): Guest Log:  *** Starting ATLAS job. (PandaID=6586321220 taskID=43634898) ***
2025-04-03 23:34:34 (6208): Status Report: Elapsed Time: '6000.000000'
2025-04-03 23:34:34 (6208): Status Report: CPU Time: '16656.812500'
2025-04-04 01:14:37 (6208): Status Report: Elapsed Time: '12000.000000'
2025-04-04 01:14:37 (6208): Status Report: CPU Time: '40206.625000'
2025-04-04 02:47:21 (6208): Guest Log:  *** Job finished ***
2025-04-04 02:47:21 (6208): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:02,241 | INFO     | [job] control thread has finished
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:02,876 | INFO     | [data] copytool_out thread has finished
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:06,246 | INFO     | [data] queue_monitor thread has finished
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:08,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140157822539584)>', '<ExcThread(monitor, started 140156770174720)>']
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:09,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:09,089 | INFO     | [monitor] control thread has ended
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,100 | INFO     | all workflow threads have been joined
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,100 | INFO     | end of generic workflow (traces error code: 0)
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,101 | INFO     | traces error code: 0
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,187 [wrapper] ==== pilot stdout END ====
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,192 [wrapper] ==== wrapper stdout RESUME ====
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,196 [wrapper] pilotpid: 6005
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,200 [wrapper] Pilot exit status: 0
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,323 [wrapper] pandaids: 6586321220
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,354 [wrapper] cleanup supervisor_pilot 19893 6006
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,358 [wrapper] Test setup, not cleaning
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,362 [wrapper] apfmon messages muted
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,365 [wrapper] ==== wrapper stdout END ====
2025-04-04 02:47:21 (6208): Guest Log: 2025-04-04 07:47:13,369 [wrapper] ==== wrapper stderr END ====
2025-04-04 02:47:21 (6208): Guest Log:  *** Error codes and diagnostics ***
2025-04-04 02:47:21 (6208): Guest Log:     "exeErrorCode": 0,
2025-04-04 02:47:21 (6208): Guest Log:     "exeErrorDiag": "",
2025-04-04 02:47:21 (6208): Guest Log:     "pilotErrorCode": 0,
2025-04-04 02:47:21 (6208): Guest Log:     "pilotErrorDiag": "",
2025-04-04 02:47:21 (6208): Guest Log:  *** Listing of results directory ***
2025-04-04 02:47:21 (6208): Guest Log: total 321596
2025-04-04 02:47:21 (6208): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 19:15 queuedata.json
2025-04-04 02:47:21 (6208): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 19:15 pilot3.tar.gz
2025-04-04 02:47:21 (6208): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 19:15 runpilot2-wrapper.sh
2025-04-04 02:47:21 (6208): Guest Log: -rwxr-xr-x. 1 atlas atlas      9184 Apr  4 02:54 init_data.xml
2025-04-04 02:47:21 (6208): Guest Log: -rwxr-xr-x. 1 atlas atlas    508890 Apr  4 02:54 input.tar.gz
2025-04-04 02:47:21 (6208): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  4 02:54 start_atlas.sh
2025-04-04 02:47:21 (6208): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 02:54 EVNT.43634896._000620.pool.root.1 -> /data/./ATLAS.root_0
2025-04-04 02:47:21 (6208): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr  4 02:56 pandaJob.out
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 02:57 setup.sh.local
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas    979994 Apr  4 03:02 agis_schedconf.cvmfs.json
2025-04-04 02:47:21 (6208): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 03:02 pilot3
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas 321993261 Apr  4 07:46 HITS.43634898._016869.pool.root.1
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 07:46 pilot_heartbeat.json
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas      1027 Apr  4 07:46 memory_monitor_summary.json
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  4 07:46 agis_ddmendpoints.agis.ALL.json
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas    352040 Apr  4 07:46 log.43634898._016869.job.log.tgz.1
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas      7671 Apr  4 07:46 heartbeat.json
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas      4413 Apr  4 07:47 pilotlog.txt
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas   1422251 Apr  4 07:47 log.43634898._016869.job.log.1
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 07:47 output.list
2025-04-04 02:47:21 (6208): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 07:47 runtime_log
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas   1792000 Apr  4 07:47 result.tar.gz
2025-04-04 02:47:21 (6208): Guest Log: -rw-r--r--. 1 atlas atlas     10953 Apr  4 07:47 runtime_log.err
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas       665 Apr  4 07:47 cgsMDmYDfK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmurHLDm7AB9hm.diag
2025-04-04 02:47:21 (6208): Guest Log: Looking for outputfile HITS.43634898._016869.pool.root.1
2025-04-04 02:47:21 (6208): Guest Log: HITS file was successfully produced
2025-04-04 02:47:21 (6208): Guest Log: -rw-------. 1 atlas atlas 321993261 Apr  4 07:46 /home/atlas/RunAtlas/HITS.43634898._016869.pool.root.1
2025-04-04 02:47:22 (6208): Guest Log: Successfully finished the ATLAS job!
2025-04-04 02:47:22 (6208): Guest Log: Copying the results back to the shared directory!
2025-04-04 02:47:22 (6208): Guest Log:  *** Contents of shared directory: ***
2025-04-04 02:47:22 (6208): Guest Log: total 671956
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root 363749092 Apr  4 02:54 ATLAS.root_0
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root 321993261 Apr  4  2025 HITS.pool.root.1
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root      9184 Apr  4 02:54 init_data.xml
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root    508890 Apr  4 01:11 input.tar.gz
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root   1792000 Apr  4  2025 result.tar.gz
2025-04-04 02:47:22 (6208): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  4 01:11 start_atlas.sh
2025-04-04 02:47:22 (6208): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-04 02:47:22 (6208): VM Completion File Detected.
2025-04-04 02:47:22 (6208): Powering off VM.
2025-04-04 02:47:23 (6208): Successfully stopped VM.
2025-04-04 02:47:23 (6208): Deregistering VM. (boinc_ee2305e9fcfa50e7, slot#5)
2025-04-04 02:47:23 (6208): Removing network bandwidth throttle group from VM.
2025-04-04 02:47:23 (6208): Removing VM from VirtualBox.
02:47:28 (6208): called boinc_finish(0)

</stderr_txt>
]]>

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