Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:19:09 (5872): wrapper (7.7.26015): starting
01:19:09 (5872): wrapper: running run_atlas (--nthreads 12)
[2025-04-04 01:19:09] Arguments: --nthreads 12
[2025-04-04 01:19:09] Threads: 12
[2025-04-04 01:19:09] Checking for CVMFS
[2025-04-04 01:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 01:19:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 01:19:10] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 01:19:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 01:19:10] 2.11.2.0 15118 4957 105580 144469 3 13 24637364 25165824 0 130560 0 38881500 99.999 1336909 12327 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-04-04 01:19:10] CVMFS is ok
[2025-04-04 01:19:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 01:19:10] Checking for apptainer binary...
[2025-04-04 01:19:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 01:19:10] Running /usr/bin/apptainer --version
[2025-04-04 01:19:10] apptainer version 1.3.2-1.el7
[2025-04-04 01:19:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 01:19:15] cg-vwn116.simple-grid.lan
[2025-04-04 01:19:15] apptainer works
[2025-04-04 01:19:15] Set ATHENA_PROC_NUMBER=12
[2025-04-04 01:19:15] Set ATHENA_CORE_NUMBER=12
[2025-04-04 01:19:15] Starting ATLAS job with PandaID=6586088311
[2025-04-04 01:19:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 01:28:10]  *** The last 200 lines of the pilot log: ***
[2025-04-04 01:28:10] 2025-04-03 23:27:56,008 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 01:28:10] 2025-04-03 23:27:56,010 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/memory_monitor_output.txt
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | INFO     | memory summary dictionary not yet available
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 01:28:10] 2025-04-03 23:27:56,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | . Timing measurements:
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . get job = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . initial setup = 2 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . payload setup = 23 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-in = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . payload execution = 226 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-out = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | . log creation = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/pilotlog.txt
[2025-04-04 01:28:10] 2025-04-03 23:27:56,080 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-04 01:28:10] - Log from pilotlog.txt -
[2025-04-04 01:28:10] 2025-04-03 23:27:51,711 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 01:28:10] 2025-04-03 23:27:54,215 | INFO     | monitor loop #145: job 0:6586088311 is in state 'failed'
[2025-04-04 01:28:10] 2025-04-03 23:27:54,216 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,008 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 01:28:10] 2025-04-03 23:27:56,010 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/memory_monitor_output.txt
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | INFO     | memory summary dictionary not yet available
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 01:28:10] 2025-04-03 23:27:56,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | . Timing measurements:
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . get job = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . initial setup = 2 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . payload setup = 23 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-in = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . payload execution = 226 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-out = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | . log creation = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/pilotlog.txt
[2025-04-04 01:28:10] 2025-04-03 23:27:56,081 | WARNING  | 
[2025-04-04 01:28:10] [begin log extracts]
[2025-04-04 01:28:10] - Log from pilotlog.txt -
[2025-04-04 01:28:10] 2025-04-03 23:27:51,711 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 01:28:10] 2025-04-03 23:27:54,215 | INFO     | monitor loop #145: job 0:6586088311 is in state 'failed'
[2025-04-04 01:28:10] 2025-04-03 23:27:54,216 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,008 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-04 01:28:10] 2025-04-03 23:27:56,010 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/memory_monitor_output.txt
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | INFO     | memory summary dictionary not yet available
[2025-04-04 01:28:10] 2025-04-03 23:27:56,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 01:28:10] 2025-04-03 23:27:56,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,014 | INFO     | . Timing measurements:
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . get job = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . initial setup = 2 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,015 | INFO     | . payload setup = 23 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-in = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . payload execution = 226 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,016 | INFO     | . stage-out = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | . log creation = 0 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,017 | INFO     | ..............................
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-04 01:28:10] 2025-04-03 23:27:56,018 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6586088311/pilotlog.txt
[2025-04-04 01:28:10] [end log extracts]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,082 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,084 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-04 01:28:10] 2025-04-03 23:27:56,391 | INFO     | 
[2025-04-04 01:28:10] 2025-04-03 23:27:56,392 | INFO     | job summary report
[2025-04-04 01:28:10] 2025-04-03 23:27:56,392 | INFO     | --------------------------------------------------
[2025-04-04 01:28:10] 2025-04-03 23:27:56,392 | INFO     | PanDA job id: 6586088311
[2025-04-04 01:28:10] 2025-04-03 23:27:56,392 | INFO     | task id: 43634898
[2025-04-04 01:28:10] 2025-04-03 23:27:56,392 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-03 23:24:32,947 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | pilot state: failed 
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | transexitcode: 65
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | exeerrorcode: 65
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,393 | INFO     | exitcode: 65
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | cpuconsumptiontime: 250 s
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | nevents: 0
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | neventsw: 0
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | pid: 16081
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | pgrp: 16081
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | corecount: 12
[2025-04-04 01:28:10] 2025-04-03 23:27:56,394 | INFO     | event service: False
[2025-04-04 01:28:10] 2025-04-03 23:27:56,395 | INFO     | sizes: {0: 2417229, 1: 2417428, 12: 2417428, 16: 2417662, 23: 2417690, 314: 2441216, 315: 2445454, 316: 2445510, 448: 2445680}
[2025-04-04 01:28:10] 2025-04-03 23:27:56,395 | INFO     | --------------------------------------------------
[2025-04-04 01:28:10] 2025-04-03 23:27:56,395 | INFO     | 
[2025-04-04 01:28:10] 2025-04-03 23:27:56,395 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-04-04 01:28:10] 2025-04-03 23:27:56,480 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,481 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,481 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 01:28:10] 2025-04-03 23:27:56,488 | INFO     | job 6586088311 has completed (purged errors)
[2025-04-04 01:28:10] 2025-04-03 23:27:56,489 | INFO     | overall cleanup function is called
[2025-04-04 01:28:10] 2025-04-03 23:27:57,499 | INFO     | --- collectZombieJob: --- 10, [16081]
[2025-04-04 01:28:10] 2025-04-03 23:27:57,499 | INFO     | zombie collector waiting for pid 16081
[2025-04-04 01:28:10] 2025-04-03 23:27:57,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 01:28:10] 2025-04-03 23:27:57,500 | INFO     | collected zombie processes
[2025-04-04 01:28:10] 2025-04-03 23:27:57,500 | INFO     | will attempt to kill all subprocesses of pid=16081
[2025-04-04 01:28:10] 2025-04-03 23:27:57,759 | INFO     | process IDs to be killed: [16081] (in reverse order)
[2025-04-04 01:28:10] 2025-04-03 23:27:57,821 | INFO     | 490s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-04 01:28:10] 2025-04-03 23:27:57,915 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 01:28:10] 2025-04-03 23:27:57,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 01:28:10] 2025-04-03 23:27:57,922 | INFO     | did not find any defunct processes belonging to 16081
[2025-04-04 01:28:10] 2025-04-03 23:27:57,929 | INFO     | did not find any defunct processes belonging to 16081
[2025-04-04 01:28:10] 2025-04-03 23:27:57,930 | INFO     | ready for new job
[2025-04-04 01:28:10] 2025-04-03 23:27:57,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 01:28:10] 2025-04-03 23:27:57,934 | INFO     | **************************************
[2025-04-04 01:28:10] 2025-04-03 23:27:57,935 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-04 01:28:10] 2025-04-03 23:27:57,935 | INFO     | **************************************
[2025-04-04 01:28:10] 2025-04-03 23:27:57,936 | INFO     | 
[2025-04-04 01:28:10] 2025-04-03 23:27:57,937 | INFO     | pilot is running in a VM
[2025-04-04 01:28:10] 2025-04-03 23:27:57,938 | INFO     | architecture information:
[2025-04-04 01:28:10] 2025-04-03 23:27:57,940 | INFO     | executing command: cat /etc/os-release
[2025-04-04 01:28:10] 2025-04-03 23:27:58,004 | INFO     | cat /etc/os-release:
[2025-04-04 01:28:10] NAME="CentOS Linux"
[2025-04-04 01:28:10] VERSION="7 (Core)"
[2025-04-04 01:28:10] ID="centos"
[2025-04-04 01:28:10] ID_LIKE="rhel fedora"
[2025-04-04 01:28:10] VERSION_ID="7"
[2025-04-04 01:28:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 01:28:10] ANSI_COLOR="0;31"
[2025-04-04 01:28:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 01:28:10] HOME_URL="https://www.centos.org/"
[2025-04-04 01:28:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 01:28:10] 
[2025-04-04 01:28:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 01:28:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 01:28:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 01:28:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 01:28:10] 
[2025-04-04 01:28:10] 2025-04-03 23:27:58,006 | INFO     | **************************************
[2025-04-04 01:28:10] 2025-04-03 23:27:58,510 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-04-04 01:28:10] 2025-04-03 23:27:58,576 | INFO     | sufficient remaining disk space (257691746304 B)
[2025-04-04 01:28:10] 2025-04-03 23:27:58,577 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 01:28:10] 2025-04-03 23:27:58,577 | INFO     | current server update state: UPDATING_FINAL
[2025-04-04 01:28:10] 2025-04-03 23:27:58,578 | INFO     | update_server=False
[2025-04-04 01:28:10] 2025-04-03 23:27:58,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 01:28:10] 2025-04-03 23:27:58,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 01:28:10] 2025-04-03 23:27:58,580 | INFO     | aborting loop
[2025-04-04 01:28:10] 2025-04-03 23:27:58,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 01:28:10] 2025-04-03 23:27:58,861 | INFO     | all data control threads have been joined
[2025-04-04 01:28:10] 2025-04-03 23:27:58,982 | INFO     | all payload control threads have been joined
[2025-04-04 01:28:10] 2025-04-03 23:27:59,028 | INFO     | PID=9575 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-04 01:28:10] 2025-04-03 23:27:59,028 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 01:28:10] 2025-04-03 23:27:59,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 01:28:10] 2025-04-03 23:27:59,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 01:28:10] 2025-04-03 23:27:59,233 | INFO     | all job control threads have been joined
[2025-04-04 01:28:10] 2025-04-03 23:27:59,585 | INFO     | [job] retrieve thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,586 | INFO     | [job] job monitor thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,667 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,868 | INFO     | [data] control thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,902 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:27:59,989 | INFO     | [payload] control thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,047 | INFO     | [payload] validate_post thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,197 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,239 | INFO     | [job] control thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,436 | INFO     | [job] validate thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,448 | INFO     | [data] copytool_in thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,477 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 01:28:10] 2025-04-03 23:28:00,597 | INFO     | [data] copytool_out thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:00,923 | INFO     | [payload] failed_post thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:01,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 01:28:10] 2025-04-03 23:28:02,410 | INFO     | [job] queue monitor thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:04,484 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 01:28:10] 2025-04-03 23:28:05,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139753048270656)>', '<ExcThread(monitor, started 139751927576320)>']
[2025-04-04 01:28:10] 2025-04-03 23:28:06,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 01:28:10] 2025-04-03 23:28:06,066 | INFO     | [monitor] control thread has ended
[2025-04-04 01:28:10] 2025-04-03 23:28:10,111 | INFO     | all workflow threads have been joined
[2025-04-04 01:28:10] 2025-04-03 23:28:10,112 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 01:28:10] 2025-04-03 23:28:10,113 | INFO     | traces error code: 0
[2025-04-04 01:28:10] 2025-04-03 23:28:10,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 01:28:10] 2025-04-03 23:28:10,401 [wrapper] ==== pilot stdout END ====
[2025-04-04 01:28:10] 2025-04-03 23:28:10,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 01:28:10] 2025-04-03 23:28:10,425 [wrapper] pilotpid: 9575
[2025-04-04 01:28:10] 2025-04-03 23:28:10,436 [wrapper] Pilot exit status: 0
[2025-04-04 01:28:10] 2025-04-03 23:28:10,487 [wrapper] pandaids: 6586088311
[2025-04-04 01:28:10] 2025-04-03 23:28:10,596 [wrapper] cleanup supervisor_pilot  9581 9576
[2025-04-04 01:28:10] 2025-04-03 23:28:10,609 [wrapper] Test setup, not cleaning
[2025-04-04 01:28:10] 2025-04-03 23:28:10,622 [wrapper] apfmon messages muted
[2025-04-04 01:28:10] 2025-04-03 23:28:10,634 [wrapper] ==== wrapper stdout END ====
[2025-04-04 01:28:10] 2025-04-03 23:28:10,647 [wrapper] ==== wrapper stderr END ====
[2025-04-04 01:28:10]  *** Error codes and diagnostics ***
[2025-04-04 01:28:10]     "exeErrorCode": 65,
[2025-04-04 01:28:10]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-04-04 01:28:10]     "pilotErrorCode": 1305,
[2025-04-04 01:28:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-04-04 01:28:10]  *** Listing of results directory ***
[2025-04-04 01:28:11] total 353448
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc    495897 Apr  3 18:46 pilot3.tar.gz
[2025-04-04 01:28:11] -rwx------. 1 boinc boinc     37140 Apr  3 19:17 runpilot2-wrapper.sh
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc      5111 Apr  3 19:17 queuedata.json
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc       100 Apr  4 01:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 01:28:11] -rwxr-xr-x. 1 boinc boinc      7986 Apr  4 01:19 run_atlas
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc       105 Apr  4 01:19 job.xml
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc 357717840 Apr  4 01:19 EVNT.43634896._000738.pool.root.1
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc      6072 Apr  4 01:19 init_data.xml
[2025-04-04 01:28:11] drwxrwx--x. 2 boinc boinc        68 Apr  4 01:19 shared
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc    508890 Apr  4 01:19 input.tar.gz
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc     17569 Apr  4 01:19 start_atlas.sh
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc         0 Apr  4 01:19 boinc_lockfile
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc      2600 Apr  4 01:19 pandaJob.out
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc       424 Apr  4 01:19 setup.sh.local
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc    980026 Apr  4 01:19 agis_schedconf.cvmfs.json
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc   1603525 Apr  4 01:19 agis_ddmendpoints.agis.ALL.json
[2025-04-04 01:28:11] drwx------. 4 boinc boinc      4096 Apr  4 01:19 pilot3
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc       526 Apr  4 01:24 boinc_task_state.xml
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc     47982 Apr  4 01:25 log.43634898._016097.job.log.tgz.1
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc        95 Apr  4 01:27 pilot_heartbeat.json
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc      8015 Apr  4 01:27 heartbeat.json
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc      8192 Apr  4 01:28 boinc_mmap_file
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc        24 Apr  4 01:28 wrapper_checkpoint.txt
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc      4732 Apr  4 01:28 pilotlog.txt
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc    150740 Apr  4 01:28 log.43634898._016097.job.log.1
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc       188 Apr  4 01:28 output.list
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc       620 Apr  4 01:28 runtime_log
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc    215040 Apr  4 01:28 result.tar.gz
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc       642 Apr  4 01:28 TGlMDmbNdK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmMhHLDmiA9WIm.diag
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc     10861 Apr  4 01:28 runtime_log.err
[2025-04-04 01:28:11] -rw-r--r--. 1 boinc boinc     21548 Apr  4 01:28 stderr.txt
[2025-04-04 01:28:11] No HITS result produced
[2025-04-04 01:28:11]  *** Contents of shared directory: ***
[2025-04-04 01:28:11] total 350068
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc 357717840 Apr  4 01:19 ATLAS.root_0
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc    508890 Apr  4 01:19 input.tar.gz
[2025-04-04 01:28:11] -rw-r--r--. 2 boinc boinc     17569 Apr  4 01:19 start_atlas.sh
[2025-04-04 01:28:11] -rw-------. 1 boinc boinc    215040 Apr  4 01:28 result.tar.gz
01:28:12 (5872): run_atlas exited; CPU time 200.698760
01:28:12 (5872): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN