Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 20:41:38 (18696): Detected: vboxwrapper 26206
2025-04-03 20:41:38 (18696): Detected: BOINC client v8.0.2
2025-04-03 20:41:38 (18696): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-03 20:41:38 (18696): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 20:41:39 (18696): Create VM. (boinc_863392be261af90a, slot#1)
2025-04-03 20:41:39 (18696): Setting Memory Size for VM. (4300MB)
2025-04-03 20:41:40 (18696): Setting CPU Count for VM. (3)
2025-04-03 20:41:40 (18696): Setting Chipset Options for VM.
2025-04-03 20:41:40 (18696): Setting Graphics Controller Options for VM.
2025-04-03 20:41:40 (18696): Setting Boot Options for VM.
2025-04-03 20:41:41 (18696): Setting Network Configuration for NAT.
2025-04-03 20:41:41 (18696): Enabling VM Network Access.
2025-04-03 20:41:41 (18696): Disabling USB Support for VM.
2025-04-03 20:41:42 (18696): Disabling COM Port Support for VM.
2025-04-03 20:41:42 (18696): Disabling LPT Port Support for VM.
2025-04-03 20:41:42 (18696): Disabling Audio Support for VM.
2025-04-03 20:41:42 (18696): Disabling Clipboard Support for VM.
2025-04-03 20:41:43 (18696): Disabling Drag and Drop Support for VM.
2025-04-03 20:41:43 (18696): Adding storage controller(s) to VM.
2025-04-03 20:41:43 (18696): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 20:41:44 (18696): Adding VirtualBox Guest Additions to VM.
2025-04-03 20:41:44 (18696): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 20:41:44 (18696): forwarding host port 61445 to guest port 80
2025-04-03 20:41:44 (18696): Enabling remote desktop for VM.
2025-04-03 20:41:45 (18696): Required extension pack not installed, remote desktop not enabled.
2025-04-03 20:41:45 (18696): Enabling shared directory for VM.
2025-04-03 20:41:45 (18696): Starting VM using VBoxManage interface. (boinc_863392be261af90a, slot#1)
2025-04-03 20:41:50 (18696): Successfully started VM. (PID = '20252')
2025-04-03 20:41:50 (18696): Reporting VM Process ID to BOINC.
2025-04-03 20:41:50 (18696): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-03 20:41:50 (18696): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 20:41:50 (18696): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 20:41:50 (18696): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 20:41:50 (18696): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 20:41:50 (18696): Detected: Web Application Enabled (http://localhost:61445)
2025-04-03 20:41:50 (18696): Preference change detected
2025-04-03 20:41:50 (18696): Setting CPU throttle for VM. (100%)
2025-04-03 20:41:50 (18696): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:41:52 (18696): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 20:41:52 (18696): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 20:41:54 (18696): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 20:41:54 (18696): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 20:41:54 (18696): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 20:43:34 (18696): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 20:43:34 (18696): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 20:43:37 (18696): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000077 main     Log opened 2025-04-03T20:43:36.066226000Z
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000166 main     OS Product: Linux
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000186 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000202 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000217 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000217 main     Process ID: 1285
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000217 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 20:43:37 (18696): Guest Log: 00:00:00.000635 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 20:43:47 (18696): Guest Log: 00:00:10.007106 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 225 463 976 000ns (GuestNow=1 743 705 790 603 610 000 ns GuestLast=1 743 713 016 067 586 000 ns fSetTimeLastLoop=true )
2025-04-03 20:44:01 (18696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 20:44:01 (18696): Guest Log: [INFO] Mounting shared directory
2025-04-03 20:44:01 (18696): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 20:44:04 (18696): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 20:44:04 (18696): Guest Log: [INFO] Detected branch: prod
2025-04-03 20:44:04 (18696): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 20:44:04 (18696): Guest Log: Copying input files
2025-04-03 20:44:05 (18696): Guest Log: Copied input files into RunAtlas.
2025-04-03 20:44:05 (18696): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 20:44:05 (18696): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 20:44:05 (18696): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 20:44:05 (18696): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 20:44:12 (18696): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 20:44:12 (18696): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 20:44:12 (18696): Guest Log: 2.6.3.0 1583 0 32200 144462 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 20:44:12 (18696): Guest Log: copied the webapp to /var/www
2025-04-03 20:44:12 (18696): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-03 20:44:12 (18696): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-03 20:44:12 (18696): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 20:44:12 (18696): Guest Log:  *** Starting ATLAS job. (PandaID=6585410234 taskID=44004367) ***
2025-04-03 22:21:53 (18696): Status Report: Elapsed Time: '6000.000000'
2025-04-03 22:21:53 (18696): Status Report: CPU Time: '15141.562500'
2025-04-03 22:22:19 (18696): Preference change detected
2025-04-03 22:22:19 (18696): Setting CPU throttle for VM. (90%)
2025-04-03 22:22:20 (18696): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 23:32:03 (18696): Guest Log:  *** Job finished ***
2025-04-03 23:32:03 (18696): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:27,678 | INFO     | [payload] validate_post thread has finished
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:27,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:32,126 | INFO     | [data] queue_monitor thread has finished
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:33,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165001574208)>', '<ExcThread(monitor, started 140164428977920)>']
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:33,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:33,626 | INFO     | [monitor] control thread has ended
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,064 | INFO     | all workflow threads have been joined
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,065 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,065 | INFO     | traces error code: 0
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,137 [wrapper] ==== pilot stdout END ====
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,139 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,142 [wrapper] pilotpid: 5891
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,145 [wrapper] Pilot exit status: 0
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,257 [wrapper] pandaids: 6585410234
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,277 [wrapper] cleanup supervisor_pilot  8980 5892
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,281 [wrapper] Test setup, not cleaning
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,284 [wrapper] apfmon messages muted
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,288 [wrapper] ==== wrapper stdout END ====
2025-04-03 23:32:03 (18696): Guest Log: 2025-04-03 21:31:38,291 [wrapper] ==== wrapper stderr END ====
2025-04-03 23:32:03 (18696): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 23:32:03 (18696): Guest Log:     "exeErrorCode": 0,
2025-04-03 23:32:03 (18696): Guest Log:     "exeErrorDiag": "",
2025-04-03 23:32:03 (18696): Guest Log:     "pilotErrorCode": 0,
2025-04-03 23:32:03 (18696): Guest Log:     "pilotErrorDiag": "",
2025-04-03 23:32:03 (18696): Guest Log:  *** Listing of results directory ***
2025-04-03 23:32:03 (18696): Guest Log: total 198236
2025-04-03 23:32:03 (18696): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr  3 14:28 pilot3.tar.gz
2025-04-03 23:32:03 (18696): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr  3 14:54 queuedata.json
2025-04-03 23:32:03 (18696): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 14:54 runpilot2-wrapper.sh
2025-04-03 23:32:03 (18696): Guest Log: -rwxr-xr-x. 1 atlas atlas      9070 Apr  3 18:43 init_data.xml
2025-04-03 23:32:03 (18696): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 Apr  3 18:43 input.tar.gz
2025-04-03 23:32:03 (18696): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr  3 18:43 start_atlas.sh
2025-04-03 23:32:03 (18696): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  3 18:43 EVNT.44004365._000416.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 23:32:03 (18696): Guest Log: -rw-r--r--. 1 atlas atlas      2551 Apr  3 18:43 pandaJob.out
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas       424 Apr  3 18:43 setup.sh.local
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas    979944 Apr  3 18:44 agis_schedconf.cvmfs.json
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  3 18:44 agis_ddmendpoints.agis.ALL.json
2025-04-03 23:32:03 (18696): Guest Log: drwx------. 4 atlas atlas      4096 Apr  3 18:44 pilot3
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas        95 Apr  3 21:30 pilot_heartbeat.json
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas 196883409 Apr  3 21:30 HITS.44004367._010402.pool.root.1
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas      1024 Apr  3 21:30 memory_monitor_summary.json
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas    283743 Apr  3 21:31 log.44004367._010402.job.log.tgz.1
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas      7672 Apr  3 21:31 heartbeat.json
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas      4722 Apr  3 21:31 pilotlog.txt
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas    888014 Apr  3 21:31 log.44004367._010402.job.log.1
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas       357 Apr  3 21:31 output.list
2025-04-03 23:32:03 (18696): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  3 21:31 runtime_log
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas   1187840 Apr  3 21:31 result.tar.gz
2025-04-03 23:32:03 (18696): Guest Log: -rw-r--r--. 1 atlas atlas     10902 Apr  3 21:31 runtime_log.err
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas       646 Apr  3 21:31 aGgLDmO8aK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmZUHLDmUkMqHo.diag
2025-04-03 23:32:03 (18696): Guest Log: Looking for outputfile HITS.44004367._010402.pool.root.1
2025-04-03 23:32:03 (18696): Guest Log: HITS file was successfully produced
2025-04-03 23:32:03 (18696): Guest Log: -rw-------. 1 atlas atlas 196883409 Apr  3 21:30 /home/atlas/RunAtlas/HITS.44004367._010402.pool.root.1
2025-04-03 23:32:04 (18696): Guest Log: Successfully finished the ATLAS job!
2025-04-03 23:32:04 (18696): Guest Log: Copying the results back to the shared directory!
2025-04-03 23:32:04 (18696): Guest Log:  *** Contents of shared directory: ***
2025-04-03 23:32:04 (18696): Guest Log: total 409560
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root 220768815 Apr  3 18:41 ATLAS.root_0
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root 196883409 Apr  3  2025 HITS.pool.root.1
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root      9070 Apr  3 18:41 init_data.xml
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root    508881 Apr  3 18:33 input.tar.gz
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root   1187840 Apr  3  2025 result.tar.gz
2025-04-03 23:32:04 (18696): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr  3 18:33 start_atlas.sh
2025-04-03 23:32:04 (18696): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 23:32:04 (18696): VM Completion File Detected.
2025-04-03 23:32:04 (18696): Powering off VM.
2025-04-03 23:32:05 (18696): Successfully stopped VM.
2025-04-03 23:32:05 (18696): Deregistering VM. (boinc_863392be261af90a, slot#1)
2025-04-03 23:32:05 (18696): Removing network bandwidth throttle group from VM.
2025-04-03 23:32:05 (18696): Removing VM from VirtualBox.
23:32:10 (18696): called boinc_finish(0)

</stderr_txt>
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