Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:15:15 (1248452): wrapper (7.7.26015): starting
04:15:15 (1248452): wrapper: running run_atlas (--nthreads 3)
[2025-04-04 04:15:15] Arguments: --nthreads 3
[2025-04-04 04:15:15] Threads: 3
[2025-04-04 04:15:15] Checking for CVMFS
[2025-04-04 04:15:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-04 04:15:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-04 04:15:15] Running cvmfs_config stat atlas.cern.ch
[2025-04-04 04:15:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-04 04:15:15] 2.9.2.0 16335 5230 82956 144473 1 56 14716704 36864000 0 130560 0 4663100 99.991 1346851 3559 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-04 04:15:15] CVMFS is ok
[2025-04-04 04:15:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-04 04:15:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-04 04:15:15] Further information can be found at the LHC@home message board.
[2025-04-04 04:15:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-04 04:15:15] Checking for apptainer binary...
[2025-04-04 04:15:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-04 04:15:15] Running /usr/bin/apptainer --version
[2025-04-04 04:15:15] apptainer version 1.3.6-6.1
[2025-04-04 04:15:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-04 04:15:15] legendA269a
[2025-04-04 04:15:15] apptainer works
[2025-04-04 04:15:15] Set ATHENA_PROC_NUMBER=3
[2025-04-04 04:15:15] Set ATHENA_CORE_NUMBER=3
[2025-04-04 04:15:15] Starting ATLAS job with PandaID=6584904526
[2025-04-04 04:15:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-04 05:41:44]  *** The last 200 lines of the pilot log: ***
[2025-04-04 05:41:44]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-04 05:41:44]  is_altstaged=None
[2025-04-04 05:41:44]  is_tar=False
[2025-04-04 05:41:44]  lfn=log.44004367._005367.job.log.tgz.1
[2025-04-04 05:41:44]  mtime=0
[2025-04-04 05:41:44]  protocol_id=None
[2025-04-04 05:41:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-04 05:41:44]  replicas=None
[2025-04-04 05:41:44]  scope=mc23_13p6TeV
[2025-04-04 05:41:44]  status=None
[2025-04-04 05:41:44]  status_code=0
[2025-04-04 05:41:44]  storage_token=
[2025-04-04 05:41:44]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6584904526/log.44004367._005367.job.log.tgz.1
[2025-04-04 05:41:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/60/log.44004367._005367.job.log.tgz.1
[2025-04-04 05:41:44]  workdir=None
[2025-04-04 05:41:44] ]
[2025-04-04 05:41:44] 2025-04-04 03:41:14,858 | INFO     | transferring file log.44004367._005367.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6584904526/log.44004367._005367.job.log.tgz.1 to /local/data/boinc/
[2025-04-04 05:41:44] 2025-04-04 03:41:14,859 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6584904526/log.44004367._005367.job.log.tgz.1 /local/data/boinc/slots/0/log.44004367._0053
[2025-04-04 05:41:44] 2025-04-04 03:41:14,871 | INFO     | adding to output.list: log.44004367._005367.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/60/log.44004367._005367.job.log.tg
[2025-04-04 05:41:44] 2025-04-04 03:41:14,872 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-04 05:41:44] 2025-04-04 03:41:14,872 | INFO     | summary of transferred files:
[2025-04-04 05:41:44] 2025-04-04 03:41:14,872 | INFO     |  -- lfn=log.44004367._005367.job.log.tgz.1, status_code=0, status=transferred
[2025-04-04 05:41:44] 2025-04-04 03:41:14,872 | INFO     | stage-out finished correctly
[2025-04-04 05:41:44] 2025-04-04 03:41:17,548 | WARNING  | process 1258538 can no longer be monitored (due to stat problems) - aborting
[2025-04-04 05:41:44] 2025-04-04 03:41:17,548 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6584904526/memory_monitor_summary.json (trf name=prmon)
[2025-04-04 05:41:44] 2025-04-04 03:41:17,573 | INFO     | number of running child processes to parent process 1258538: 1
[2025-04-04 05:41:44] 2025-04-04 03:41:17,574 | INFO     | maximum number of monitored processes: 6
[2025-04-04 05:41:44] 2025-04-04 03:41:18,311 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-04 05:41:44] 2025-04-04 03:41:20,077 | INFO     | monitor loop #397: job 0:6584904526 is in state 'finished'
[2025-04-04 05:41:44] 2025-04-04 03:41:20,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 05:41:44] 2025-04-04 03:41:21,285 | INFO     | job 6584904526 has state=finished
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | preparing for final server update for job 6584904526 in state='finished'
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | this job has now completed (state=finished)
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | log transfer has been attempted: DONE
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | job 6584904526 has finished - writing final server update
[2025-04-04 05:41:44] 2025-04-04 03:41:21,286 | INFO     | total number of processed events: 400 (read)
[2025-04-04 05:41:44] 2025-04-04 03:41:21,287 | INFO     | executing command: lscpu
[2025-04-04 05:41:44] 2025-04-04 03:41:21,308 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-04 05:41:44] 2025-04-04 03:41:22,581 | INFO     | monitor loop #398: job 0:6584904526 is in state 'finished'
[2025-04-04 05:41:44] 2025-04-04 03:41:22,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6584904526/memory_monitor_summary.json (trf name=prmon)
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | INFO     | extracted standard info from prmon json
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | INFO     | extracted standard memory fields from prmon json
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-04 05:41:44] 2025-04-04 03:41:24,592 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | fitting pss+swap vs Time
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | model: linear, x: [1743733244.0, 1743733305.0, 1743733366.0, 1743733427.0, 1743733488.0, 1743733549.0, 1743733610.0, 1743733671.0, 1743733732.0, 1743733793.0, 1743
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | sum of square deviations: 147126479.5
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | sum of deviations: 4169943712.9999995
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | mean x: 1743735592.5
[2025-04-04 05:41:44] 2025-04-04 03:41:24,593 | INFO     | mean y: 2456701.769230769
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | -- intersect: -49419505244.10676
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | intersect: -49419505244.10676
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | chi2: 1.0714085884656042
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | -- intersect: -49419505244.10676
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | current memory leak: 28.34 B/s (using 78 data points, chi2=1.07)
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | ..............................
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . Timing measurements:
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . get job = 0 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . initial setup = 1 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . payload setup = 2 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . stage-in = 0 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . payload execution = 5135 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . stage-out = 0 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | . log creation = 0 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,594 | INFO     | ..............................
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | 
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | job summary report
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | --------------------------------------------------
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | PanDA job id: 6584904526
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | task id: 44004367
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | errors: (none)
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | pilot state: finished 
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | transexitcode: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:24,993 | INFO     | exeerrorcode: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | exeerrordiag: 
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | exitcode: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | exitmsg: OK
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | cpuconsumptiontime: 13506 s
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | nevents: 400
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | neventsw: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | pid: 1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | pgrp: 1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | corecount: 3
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | event service: False
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | sizes: {0: 2417325, 2: 2417531, 11: 2417559, 5141: 2452992, 5145: 2452992, 5151: 2453162}
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | --------------------------------------------------
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | 
[2025-04-04 05:41:44] 2025-04-04 03:41:24,994 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-04 05:41:44] 2025-04-04 03:41:25,006 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | job 6584904526 has completed (purged errors)
[2025-04-04 05:41:44] 2025-04-04 03:41:25,007 | INFO     | overall cleanup function is called
[2025-04-04 05:41:44] 2025-04-04 03:41:26,014 | INFO     | --- collectZombieJob: --- 10, [1258538]
[2025-04-04 05:41:44] 2025-04-04 03:41:26,014 | INFO     | zombie collector waiting for pid 1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:26,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-04 05:41:44] 2025-04-04 03:41:26,014 | INFO     | collected zombie processes
[2025-04-04 05:41:44] 2025-04-04 03:41:26,014 | INFO     | will attempt to kill all subprocesses of pid=1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:26,042 | INFO     | process IDs to be killed: [1258538] (in reverse order)
[2025-04-04 05:41:44] 2025-04-04 03:41:26,065 | WARNING  | found no corresponding commands to process id(s)
[2025-04-04 05:41:44] 2025-04-04 03:41:26,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-04 05:41:44] 2025-04-04 03:41:26,066 | INFO     | did not find any defunct processes belonging to 1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:26,067 | INFO     | did not find any defunct processes belonging to 1258538
[2025-04-04 05:41:44] 2025-04-04 03:41:26,067 | INFO     | ready for new job
[2025-04-04 05:41:44] 2025-04-04 03:41:26,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | ***************************************
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | ***  PanDA Pilot version 3.10.0.24  ***
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | ***************************************
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | 
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | architecture information:
[2025-04-04 05:41:44] 2025-04-04 03:41:26,068 | INFO     | executing command: cat /etc/os-release
[2025-04-04 05:41:44] 2025-04-04 03:41:26,077 | INFO     | cat /etc/os-release:
[2025-04-04 05:41:44] NAME="CentOS Linux"
[2025-04-04 05:41:44] VERSION="7 (Core)"
[2025-04-04 05:41:44] ID="centos"
[2025-04-04 05:41:44] ID_LIKE="rhel fedora"
[2025-04-04 05:41:44] VERSION_ID="7"
[2025-04-04 05:41:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-04 05:41:44] ANSI_COLOR="0;31"
[2025-04-04 05:41:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-04 05:41:44] HOME_URL="https://www.centos.org/"
[2025-04-04 05:41:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-04 05:41:44] 
[2025-04-04 05:41:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-04 05:41:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-04 05:41:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-04 05:41:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-04 05:41:44] 
[2025-04-04 05:41:44] 2025-04-04 03:41:26,077 | INFO     | ***************************************
[2025-04-04 05:41:44] 2025-04-04 03:41:26,580 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-04 05:41:44] 2025-04-04 03:41:26,591 | INFO     | sufficient remaining disk space (385514209280 B)
[2025-04-04 05:41:44] 2025-04-04 03:41:26,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-04 05:41:44] 2025-04-04 03:41:26,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-04 05:41:44] 2025-04-04 03:41:26,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-04 05:41:44] 2025-04-04 03:41:26,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-04 05:41:44] 2025-04-04 03:41:26,592 | INFO     | aborting loop
[2025-04-04 05:41:44] 2025-04-04 03:41:26,623 | INFO     | all payload control threads have been joined
[2025-04-04 05:41:44] 2025-04-04 03:41:26,761 | INFO     | found 0 job(s) in 20 queues
[2025-04-04 05:41:44] 2025-04-04 03:41:26,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-04 05:41:44] 2025-04-04 03:41:26,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-04 05:41:44] 2025-04-04 03:41:26,835 | INFO     | all data control threads have been joined
[2025-04-04 05:41:44] 2025-04-04 03:41:27,108 | INFO     | all job control threads have been joined
[2025-04-04 05:41:44] 2025-04-04 03:41:27,597 | INFO     | [job] job monitor thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,597 | INFO     | [job] retrieve thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,597 | INFO     | [job] queue monitor thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,628 | INFO     | [payload] control thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,652 | INFO     | [payload] validate_pre thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,841 | INFO     | [data] control thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:27,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-04 05:41:44] 2025-04-04 03:41:27,923 | INFO     | [payload] failed_post thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:28,114 | INFO     | [job] control thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:28,408 | INFO     | [payload] validate_post thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:28,426 | INFO     | [data] copytool_in thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:28,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-04 05:41:44] 2025-04-04 03:41:28,941 | INFO     | [payload] execute_payloads thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:29,031 | INFO     | [job] create_data_payload thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:29,037 | INFO     | [job] validate thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:29,927 | INFO     | [data] copytool_out thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:32,858 | INFO     | [data] queue_monitor thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:37,558 | INFO     | job.realtimelogging is not enabled
[2025-04-04 05:41:44] 2025-04-04 03:41:38,563 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-04 05:41:44] 2025-04-04 03:41:39,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665569511232)>', '<ExcThread(monitor, started 140665291769600)>']
[2025-04-04 05:41:44] 2025-04-04 03:41:39,831 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-04 05:41:44] 2025-04-04 03:41:39,831 | INFO     | [monitor] control thread has ended
[2025-04-04 05:41:44] 2025-04-04 03:41:44,467 | INFO     | all workflow threads have been joined
[2025-04-04 05:41:44] 2025-04-04 03:41:44,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-04 05:41:44] 2025-04-04 03:41:44,467 | INFO     | traces error code: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:44,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-04 05:41:44] 2025-04-04 03:41:44,517 [wrapper] ==== pilot stdout END ====
[2025-04-04 05:41:44] 2025-04-04 03:41:44,519 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-04 05:41:44] 2025-04-04 03:41:44,521 [wrapper] pilotpid: 1252103
[2025-04-04 05:41:44] 2025-04-04 03:41:44,523 [wrapper] Pilot exit status: 0
[2025-04-04 05:41:44] 2025-04-04 03:41:44,531 [wrapper] pandaids: 6584904526
[2025-04-04 05:41:44] 2025-04-04 03:41:44,546 [wrapper] cleanup supervisor_pilot 1270991 1252104
[2025-04-04 05:41:44] 2025-04-04 03:41:44,548 [wrapper] Test setup, not cleaning
[2025-04-04 05:41:44] 2025-04-04 03:41:44,550 [wrapper] apfmon messages muted
[2025-04-04 05:41:44] 2025-04-04 03:41:44,552 [wrapper] ==== wrapper stdout END ====
[2025-04-04 05:41:44] 2025-04-04 03:41:44,554 [wrapper] ==== wrapper stderr END ====
[2025-04-04 05:41:44]  *** Error codes and diagnostics ***
[2025-04-04 05:41:44]     "exeErrorCode": 0,
[2025-04-04 05:41:44]     "exeErrorDiag": "",
[2025-04-04 05:41:44]     "pilotErrorCode": 0,
[2025-04-04 05:41:44]     "pilotErrorDiag": "",
[2025-04-04 05:41:44]  *** Listing of results directory ***
[2025-04-04 05:41:44] total 414700
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc    494584 Apr  3 01:31 pilot3.tar.gz
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc      5112 Apr  3 01:55 queuedata.json
[2025-04-04 05:41:44] -rwx------ 1 boinc boinc     37140 Apr  3 01:58 runpilot2-wrapper.sh
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc       100 Apr  4 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-04 05:41:44] -rwxr-xr-x 1 boinc boinc      7986 Apr  4 04:15 run_atlas
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc       105 Apr  4 04:15 job.xml
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc 226133359 Apr  4 04:15 EVNT.44004365._000215.pool.root.1
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc      6933 Apr  4 04:15 init_data.xml
[2025-04-04 05:41:44] drwxrwx--x 2 boinc boinc      4096 Apr  4 04:15 shared
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc    507244 Apr  4 04:15 input.tar.gz
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc     17571 Apr  4 04:15 start_atlas.sh
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc         0 Apr  4 04:15 boinc_lockfile
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc      2548 Apr  4 04:15 pandaJob.out
[2025-04-04 05:41:44] -rw------- 1 boinc boinc       424 Apr  4 04:15 setup.sh.local
[2025-04-04 05:41:44] -rw------- 1 boinc boinc    979994 Apr  4 04:15 agis_schedconf.cvmfs.json
[2025-04-04 05:41:44] -rw------- 1 boinc boinc   1603525 Apr  4 04:15 agis_ddmendpoints.agis.ALL.json
[2025-04-04 05:41:44] drwx------ 4 boinc boinc      4096 Apr  4 04:15 pilot3
[2025-04-04 05:41:44] -rw------- 1 boinc boinc        95 Apr  4 05:40 pilot_heartbeat.json
[2025-04-04 05:41:44] -rw------- 1 boinc boinc 193211112 Apr  4 05:40 HITS.44004367._005367.pool.root.1
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc       529 Apr  4 05:40 boinc_task_state.xml
[2025-04-04 05:41:44] -rw------- 1 boinc boinc      1015 Apr  4 05:41 memory_monitor_summary.json
[2025-04-04 05:41:44] -rw------- 1 boinc boinc    239007 Apr  4 05:41 log.44004367._005367.job.log.tgz.1
[2025-04-04 05:41:44] -rw------- 1 boinc boinc      7655 Apr  4 05:41 heartbeat.json
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc      8192 Apr  4 05:41 boinc_mmap_file
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc        27 Apr  4 05:41 wrapper_checkpoint.txt
[2025-04-04 05:41:44] -rw------- 1 boinc boinc      4295 Apr  4 05:41 pilotlog.txt
[2025-04-04 05:41:44] -rw------- 1 boinc boinc    499313 Apr  4 05:41 log.44004367._005367.job.log.1
[2025-04-04 05:41:44] -rw------- 1 boinc boinc       357 Apr  4 05:41 output.list
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc       620 Apr  4 05:41 runtime_log
[2025-04-04 05:41:44] -rw------- 1 boinc boinc    757760 Apr  4 05:41 result.tar.gz
[2025-04-04 05:41:44] -rw------- 1 boinc boinc       664 Apr  4 05:41 vTDNDmU9MK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmtUsKDmaKC4qm.diag
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc     11125 Apr  4 05:41 runtime_log.err
[2025-04-04 05:41:44] -rw-r--r-- 1 boinc boinc     21501 Apr  4 05:41 stderr.txt
[2025-04-04 05:41:44] HITS file was successfully produced:
[2025-04-04 05:41:44] -rw------- 1 boinc boinc 193211112 Apr  4 05:40 shared/HITS.pool.root.1
[2025-04-04 05:41:44]  *** Contents of shared directory: ***
[2025-04-04 05:41:44] total 410784
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc 226133359 Apr  4 04:15 ATLAS.root_0
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc    507244 Apr  4 04:15 input.tar.gz
[2025-04-04 05:41:44] -rw-r--r-- 2 boinc boinc     17571 Apr  4 04:15 start_atlas.sh
[2025-04-04 05:41:44] -rw------- 1 boinc boinc 193211112 Apr  4 05:40 HITS.pool.root.1
[2025-04-04 05:41:44] -rw------- 1 boinc boinc    757760 Apr  4 05:41 result.tar.gz
05:41:45 (1248452): run_atlas exited; CPU time 13496.734792
05:41:45 (1248452): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN