Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-06 03:36:46 (3956): Detected: vboxwrapper 26206
2025-04-06 03:36:46 (3956): Detected: BOINC client v8.0.2
2025-04-06 03:36:47 (3956): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-04-06 03:36:47 (3956): Successfully copied 'init_data.xml' to the shared directory.
2025-04-06 03:36:47 (3956): Create VM. (boinc_eedd3c3402d17776, slot#1)
2025-04-06 03:36:48 (3956): Setting Memory Size for VM. (6600MB)
2025-04-06 03:36:48 (3956): Setting CPU Count for VM. (4)
2025-04-06 03:36:48 (3956): Setting Chipset Options for VM.
2025-04-06 03:36:49 (3956): Setting Graphics Controller Options for VM.
2025-04-06 03:36:49 (3956): Setting Boot Options for VM.
2025-04-06 03:36:49 (3956): Setting Network Configuration for NAT.
2025-04-06 03:36:49 (3956): Enabling VM Network Access.
2025-04-06 03:36:50 (3956): Disabling USB Support for VM.
2025-04-06 03:36:50 (3956): Disabling COM Port Support for VM.
2025-04-06 03:36:50 (3956): Disabling LPT Port Support for VM.
2025-04-06 03:36:50 (3956): Disabling Audio Support for VM.
2025-04-06 03:36:51 (3956): Disabling Clipboard Support for VM.
2025-04-06 03:36:51 (3956): Disabling Drag and Drop Support for VM.
2025-04-06 03:36:51 (3956): Adding storage controller(s) to VM.
2025-04-06 03:36:51 (3956): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-06 03:36:52 (3956): Adding VirtualBox Guest Additions to VM.
2025-04-06 03:36:52 (3956): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-06 03:36:52 (3956): forwarding host port 59943 to guest port 80
2025-04-06 03:36:53 (3956): Enabling remote desktop for VM.
2025-04-06 03:36:53 (3956): Enabling shared directory for VM.
2025-04-06 03:36:54 (3956): Starting VM using VBoxManage interface. (boinc_eedd3c3402d17776, slot#1)
2025-04-06 03:37:02 (3956): Successfully started VM. (PID = '6620')
2025-04-06 03:37:02 (3956): Reporting VM Process ID to BOINC.
2025-04-06 03:37:02 (3956): Guest Log: BIOS: VirtualBox 7.0.14
2025-04-06 03:37:02 (3956): Guest Log: CPUID EDX: 0x178bfbff
2025-04-06 03:37:02 (3956): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-06 03:37:02 (3956): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-06 03:37:02 (3956): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-06 03:37:02 (3956): Detected: Web Application Enabled (http://localhost:59943)
2025-04-06 03:37:02 (3956): Detected: Remote Desktop Enabled (localhost:59944)
2025-04-06 03:37:02 (3956): Preference change detected
2025-04-06 03:37:02 (3956): Setting CPU throttle for VM. (100%)
2025-04-06 03:37:02 (3956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-06 03:37:04 (3956): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-06 03:37:04 (3956): Guest Log: BIOS: Booting from Hard Disk...
2025-04-06 03:37:07 (3956): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-06 03:37:07 (3956): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-06 03:37:07 (3956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-06 03:37:15 (3956): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-06 03:37:15 (3956): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-06 03:37:22 (3956): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000187 main     Log opened 2025-04-06T03:37:20.595777000Z
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000318 main     OS Product: Linux
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000366 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000407 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000447 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000448 main     Process ID: 1372
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.000449 main     Package type: LINUX_64BITS_GENERIC
2025-04-06 03:37:22 (3956): Guest Log: 00:00:00.001599 main     5.2.32 r132073 started. Verbose level = 0
2025-04-06 03:37:22 (3956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-06 03:37:22 (3956): Guest Log: [INFO] Mounting shared directory
2025-04-06 03:37:22 (3956): Guest Log: [INFO] Checking for init_data.xml
2025-04-06 03:37:30 (3956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-06 03:37:30 (3956): Guest Log: [INFO] Detected branch: prod
2025-04-06 03:37:30 (3956): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-06 03:37:30 (3956): Guest Log: Copying input files
2025-04-06 03:37:32 (3956): Guest Log: 00:00:10.004686 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 997 673 000ns (GuestNow=1 743 907 051 602 283 000 ns GuestLast=1 743 910 640 599 956 000 ns fSetTimeLastLoop=true )
2025-04-06 03:37:32 (3956): Guest Log: Copied input files into RunAtlas.
2025-04-06 03:37:32 (3956): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2025-04-06 03:37:41 (3956): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-06 03:37:42 (3956): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-06 03:37:42 (3956): Guest Log: 2.6.3.0 1649 0 31620 144548 3 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.130:3128 1
2025-04-06 03:37:43 (3956): Guest Log: copied the webapp to /var/www
2025-04-06 03:37:43 (3956): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-06 03:37:43 (3956): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-06 03:37:43 (3956): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-06 03:37:43 (3956): Guest Log:  *** Starting ATLAS job. (PandaID=6584907355 taskID=44004367) ***
2025-04-06 05:19:39 (3956): Status Report: Elapsed Time: '6000.354361'
2025-04-06 05:19:39 (3956): Status Report: CPU Time: '21725.281250'
2025-04-06 07:01:26 (3956): Status Report: Elapsed Time: '12000.354361'
2025-04-06 07:01:26 (3956): Status Report: CPU Time: '45242.734375'
2025-04-06 08:43:07 (3956): Status Report: Elapsed Time: '18000.354361'
2025-04-06 08:43:07 (3956): Status Report: CPU Time: '68759.250000'
2025-04-06 08:52:05 (3956): Guest Log:  *** Job finished ***
2025-04-06 08:52:05 (3956): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:51:54,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:51:55,649 | INFO     | [job] queue monitor thread has finished
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:51:57,223 | INFO     | [data] queue_monitor thread has finished
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:51:59,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125760862016)>', '<ExcThread(monitor, started 140124574705408)>']
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:00,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:00,171 | INFO     | [monitor] control thread has ended
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,322 | INFO     | all workflow threads have been joined
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,322 | INFO     | end of generic workflow (traces error code: 0)
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,322 | INFO     | traces error code: 0
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,418 [wrapper] ==== pilot stdout END ====
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,424 [wrapper] ==== wrapper stdout RESUME ====
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,429 [wrapper] pilotpid: 5969
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,435 [wrapper] Pilot exit status: 0
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,475 [wrapper] pandaids: 6584907355
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,520 [wrapper] cleanup supervisor_pilot 21504 5970
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,528 [wrapper] Test setup, not cleaning
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,536 [wrapper] apfmon messages muted
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,542 [wrapper] ==== wrapper stdout END ====
2025-04-06 08:52:05 (3956): Guest Log: 2025-04-06 07:52:04,548 [wrapper] ==== wrapper stderr END ====
2025-04-06 08:52:05 (3956): Guest Log:  *** Error codes and diagnostics ***
2025-04-06 08:52:05 (3956): Guest Log:     "exeErrorCode": 0,
2025-04-06 08:52:05 (3956): Guest Log:     "exeErrorDiag": "",
2025-04-06 08:52:05 (3956): Guest Log:     "pilotErrorCode": 0,
2025-04-06 08:52:05 (3956): Guest Log:     "pilotErrorDiag": "",
2025-04-06 08:52:05 (3956): Guest Log:  *** Listing of results directory ***
2025-04-06 08:52:05 (3956): Guest Log: total 197812
2025-04-06 08:52:05 (3956): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  3 01:28 pilot3.tar.gz
2025-04-06 08:52:05 (3956): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  3 01:44 queuedata.json
2025-04-06 08:52:05 (3956): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 01:44 runpilot2-wrapper.sh
2025-04-06 08:52:05 (3956): Guest Log: -rwxr-xr-x. 1 atlas atlas      9477 Apr  6 02:37 init_data.xml
2025-04-06 08:52:05 (3956): Guest Log: -rwxr-xr-x. 1 atlas atlas    507247 Apr  6 02:37 input.tar.gz
2025-04-06 08:52:05 (3956): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  6 02:37 start_atlas.sh
2025-04-06 08:52:05 (3956): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  6 02:37 EVNT.44004365._000240.pool.root.1 -> /data/./ATLAS.root_0
2025-04-06 08:52:05 (3956): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr  6 02:37 pandaJob.out
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas       460 Apr  6 02:37 setup.sh.local
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas    980067 Apr  6 02:38 agis_schedconf.cvmfs.json
2025-04-06 08:52:05 (3956): Guest Log: drwx------. 4 atlas atlas      4096 Apr  6 02:38 pilot3
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas 194470332 Apr  6 07:51 HITS.44004367._005996.pool.root.1
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas      1033 Apr  6 07:51 memory_monitor_summary.json
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas        95 Apr  6 07:51 pilot_heartbeat.json
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  6 07:51 agis_ddmendpoints.agis.ALL.json
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas    383657 Apr  6 07:51 log.44004367._005996.job.log.tgz.1
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas      7729 Apr  6 07:51 heartbeat.json
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas      4279 Apr  6 07:52 pilotlog.txt
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas   1774309 Apr  6 07:52 log.44004367._005996.job.log.1
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas       357 Apr  6 07:52 output.list
2025-04-06 08:52:05 (3956): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  6 07:52 runtime_log
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas   2181120 Apr  6 07:52 result.tar.gz
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas       660 Apr  6 07:52 UnJMDmDoOK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmLOGLDmYseSwn.diag
2025-04-06 08:52:05 (3956): Guest Log: -rw-r--r--. 1 atlas atlas     11309 Apr  6 07:52 runtime_log.err
2025-04-06 08:52:05 (3956): Guest Log: Looking for outputfile HITS.44004367._005996.pool.root.1
2025-04-06 08:52:05 (3956): Guest Log: HITS file was successfully produced
2025-04-06 08:52:05 (3956): Guest Log: -rw-------. 1 atlas atlas 194470332 Apr  6 07:51 /home/atlas/RunAtlas/HITS.44004367._005996.pool.root.1
2025-04-06 08:52:06 (3956): Guest Log: Successfully finished the ATLAS job!
2025-04-06 08:52:06 (3956): Guest Log: Copying the results back to the shared directory!
2025-04-06 08:52:06 (3956): Guest Log:  *** Contents of shared directory: ***
2025-04-06 08:52:06 (3956): Guest Log: total 407744
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root 220329709 Apr  6 02:36 ATLAS.root_0
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root 194470332 Apr  6 07:52 HITS.pool.root.1
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root      9477 Apr  6 02:36 init_data.xml
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root    507247 Apr  3 14:51 input.tar.gz
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root   2181120 Apr  6 07:52 result.tar.gz
2025-04-06 08:52:06 (3956): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  3 14:51 start_atlas.sh
2025-04-06 08:52:06 (3956): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-06 08:52:06 (3956): VM Completion File Detected.
2025-04-06 08:52:06 (3956): Powering off VM.
2025-04-06 08:52:07 (3956): Successfully stopped VM.
2025-04-06 08:52:07 (3956): Deregistering VM. (boinc_eedd3c3402d17776, slot#1)
2025-04-06 08:52:07 (3956): Removing network bandwidth throttle group from VM.
2025-04-06 08:52:08 (3956): Removing VM from VirtualBox.
08:52:13 (3956): called boinc_finish(0)

</stderr_txt>
]]>

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