Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 17:28:01 (24660): Detected: vboxwrapper 26206
2025-04-03 17:28:01 (24660): Detected: BOINC client v8.0.2
2025-04-03 17:28:01 (24660): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-03 17:28:01 (24660): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 17:28:02 (24660): Create VM. (boinc_56f72cdf34b656ac, slot#9)
2025-04-03 17:28:02 (24660): Setting Memory Size for VM. (4300MB)
2025-04-03 17:28:03 (24660): Setting CPU Count for VM. (3)
2025-04-03 17:28:03 (24660): Setting Chipset Options for VM.
2025-04-03 17:28:03 (24660): Setting Graphics Controller Options for VM.
2025-04-03 17:28:03 (24660): Setting Boot Options for VM.
2025-04-03 17:28:04 (24660): Setting Network Configuration for NAT.
2025-04-03 17:28:04 (24660): Enabling VM Network Access.
2025-04-03 17:28:04 (24660): Disabling USB Support for VM.
2025-04-03 17:28:05 (24660): Disabling COM Port Support for VM.
2025-04-03 17:28:05 (24660): Disabling LPT Port Support for VM.
2025-04-03 17:28:05 (24660): Disabling Audio Support for VM.
2025-04-03 17:28:05 (24660): Disabling Clipboard Support for VM.
2025-04-03 17:28:06 (24660): Disabling Drag and Drop Support for VM.
2025-04-03 17:28:06 (24660): Adding storage controller(s) to VM.
2025-04-03 17:28:06 (24660): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 17:28:07 (24660): Adding VirtualBox Guest Additions to VM.
2025-04-03 17:28:07 (24660): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 17:28:07 (24660): forwarding host port 58321 to guest port 80
2025-04-03 17:28:07 (24660): Enabling remote desktop for VM.
2025-04-03 17:28:08 (24660): Required extension pack not installed, remote desktop not enabled.
2025-04-03 17:28:08 (24660): Enabling shared directory for VM.
2025-04-03 17:28:08 (24660): Starting VM using VBoxManage interface. (boinc_56f72cdf34b656ac, slot#9)
2025-04-03 17:28:13 (24660): Successfully started VM. (PID = '22156')
2025-04-03 17:28:13 (24660): Reporting VM Process ID to BOINC.
2025-04-03 17:28:13 (24660): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-03 17:28:13 (24660): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 17:28:13 (24660): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 17:28:13 (24660): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 17:28:13 (24660): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 17:28:13 (24660): Detected: Web Application Enabled (http://localhost:58321)
2025-04-03 17:28:13 (24660): Preference change detected
2025-04-03 17:28:13 (24660): Setting CPU throttle for VM. (90%)
2025-04-03 17:28:13 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 17:28:15 (24660): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 17:28:15 (24660): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 17:28:18 (24660): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 17:28:18 (24660): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 17:28:18 (24660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 17:28:23 (24660): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 17:28:23 (24660): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 17:28:27 (24660): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000082 main     Log opened 2025-04-03T17:28:25.512904000Z
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000188 main     OS Product: Linux
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000208 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000223 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000238 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000238 main     Process ID: 1286
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000239 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 17:28:27 (24660): Guest Log: 00:00:00.000735 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 17:28:37 (24660): Guest Log: 00:00:10.007855 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 113 168 000ns (GuestNow=1 743 694 117 401 232 000 ns GuestLast=1 743 701 305 514 400 000 ns fSetTimeLastLoop=true )
2025-04-03 17:28:51 (24660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 17:28:51 (24660): Guest Log: [INFO] Mounting shared directory
2025-04-03 17:28:51 (24660): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 17:28:56 (24660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 17:28:56 (24660): Guest Log: [INFO] Detected branch: prod
2025-04-03 17:28:56 (24660): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 17:28:56 (24660): Guest Log: Copying input files
2025-04-03 17:28:57 (24660): Guest Log: Copied input files into RunAtlas.
2025-04-03 17:28:57 (24660): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 17:28:57 (24660): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 17:28:57 (24660): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 17:28:57 (24660): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 17:29:06 (24660): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 17:29:06 (24660): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 17:29:06 (24660): Guest Log: 2.6.3.0 1572 0 30184 144457 3 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 17:29:06 (24660): Guest Log: copied the webapp to /var/www
2025-04-03 17:29:06 (24660): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-03 17:29:06 (24660): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-03 17:29:06 (24660): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 17:29:06 (24660): Guest Log:  *** Starting ATLAS job. (PandaID=6584912044 taskID=44004367) ***
2025-04-03 19:08:16 (24660): Status Report: Elapsed Time: '6000.000000'
2025-04-03 19:08:16 (24660): Status Report: CPU Time: '13861.500000'
2025-04-03 20:02:53 (24660): Preference change detected
2025-04-03 20:02:53 (24660): Setting CPU throttle for VM. (100%)
2025-04-03 20:02:53 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:03:39 (24660): Preference change detected
2025-04-03 20:03:39 (24660): Setting CPU throttle for VM. (100%)
2025-04-03 20:03:39 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:05:03 (24660): Preference change detected
2025-04-03 20:05:03 (24660): Setting CPU throttle for VM. (100%)
2025-04-03 20:05:03 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:05:43 (24660): Preference change detected
2025-04-03 20:05:43 (24660): Setting CPU throttle for VM. (100%)
2025-04-03 20:05:43 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:06:35 (24660): Preference change detected
2025-04-03 20:06:35 (24660): Setting CPU throttle for VM. (100%)
2025-04-03 20:06:35 (24660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 20:32:18 (24660): Guest Log:  *** Job finished ***
2025-04-03 20:32:18 (24660): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:15,630 | INFO     | [data] copytool_in thread has finished
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:16,334 | INFO     | [data] copytool_out thread has finished
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:18,402 | INFO     | [data] queue_monitor thread has finished
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:19,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255669045056)>', '<ExcThread(monitor, started 140255101445888)>']
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:20,154 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:20,154 | INFO     | [monitor] control thread has ended
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,858 | INFO     | all workflow threads have been joined
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,858 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,858 | INFO     | traces error code: 0
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,970 [wrapper] ==== pilot stdout END ====
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,975 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,979 [wrapper] pilotpid: 5891
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:24,983 [wrapper] Pilot exit status: 0
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,088 [wrapper] pandaids: 6584912044
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,110 [wrapper] cleanup supervisor_pilot 10540 5892
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,115 [wrapper] Test setup, not cleaning
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,118 [wrapper] apfmon messages muted
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,122 [wrapper] ==== wrapper stdout END ====
2025-04-03 20:32:18 (24660): Guest Log: 2025-04-03 18:32:25,127 [wrapper] ==== wrapper stderr END ====
2025-04-03 20:32:18 (24660): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 20:32:18 (24660): Guest Log:     "exeErrorCode": 0,
2025-04-03 20:32:18 (24660): Guest Log:     "exeErrorDiag": "",
2025-04-03 20:32:18 (24660): Guest Log:     "pilotErrorCode": 0,
2025-04-03 20:32:18 (24660): Guest Log:     "pilotErrorDiag": "",
2025-04-03 20:32:18 (24660): Guest Log:  *** Listing of results directory ***
2025-04-03 20:32:18 (24660): Guest Log: total 198348
2025-04-03 20:32:18 (24660): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  3 06:15 pilot3.tar.gz
2025-04-03 20:32:18 (24660): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  3 06:19 queuedata.json
2025-04-03 20:32:18 (24660): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 06:23 runpilot2-wrapper.sh
2025-04-03 20:32:18 (24660): Guest Log: -rwxr-xr-x. 1 atlas atlas      9068 Apr  3 15:28 init_data.xml
2025-04-03 20:32:18 (24660): Guest Log: -rwxr-xr-x. 1 atlas atlas    507249 Apr  3 15:28 input.tar.gz
2025-04-03 20:32:18 (24660): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  3 15:28 start_atlas.sh
2025-04-03 20:32:18 (24660): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  3 15:28 EVNT.44004365._000320.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 20:32:18 (24660): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr  3 15:29 pandaJob.out
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas       424 Apr  3 15:29 setup.sh.local
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas    979671 Apr  3 15:30 agis_schedconf.cvmfs.json
2025-04-03 20:32:18 (24660): Guest Log: drwx------. 4 atlas atlas      4096 Apr  3 15:30 pilot3
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas        95 Apr  3 18:31 pilot_heartbeat.json
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas 196889275 Apr  3 18:31 HITS.44004367._007995.pool.root.1
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas      1027 Apr  3 18:31 memory_monitor_summary.json
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  3 18:31 agis_ddmendpoints.agis.ALL.json
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas    288920 Apr  3 18:31 log.44004367._007995.job.log.tgz.1
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas      7679 Apr  3 18:32 heartbeat.json
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas      4402 Apr  3 18:32 pilotlog.txt
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas    940251 Apr  3 18:32 log.44004367._007995.job.log.1
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas       357 Apr  3 18:32 output.list
2025-04-03 20:32:18 (24660): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  3 18:32 runtime_log
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas   1249280 Apr  3 18:32 result.tar.gz
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas       648 Apr  3 18:32 w4CMDmfATK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm3jGLDm3EiGkn.diag
2025-04-03 20:32:18 (24660): Guest Log: -rw-r--r--. 1 atlas atlas     10903 Apr  3 18:32 runtime_log.err
2025-04-03 20:32:18 (24660): Guest Log: Looking for outputfile HITS.44004367._007995.pool.root.1
2025-04-03 20:32:18 (24660): Guest Log: HITS file was successfully produced
2025-04-03 20:32:18 (24660): Guest Log: -rw-------. 1 atlas atlas 196889275 Apr  3 18:31 /home/atlas/RunAtlas/HITS.44004367._007995.pool.root.1
2025-04-03 20:32:19 (24660): Guest Log: Successfully finished the ATLAS job!
2025-04-03 20:32:19 (24660): Guest Log: Copying the results back to the shared directory!
2025-04-03 20:32:19 (24660): Guest Log:  *** Contents of shared directory: ***
2025-04-03 20:32:19 (24660): Guest Log: total 411896
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root 223099348 Apr  3 15:28 ATLAS.root_0
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root 196889275 Apr  3 18:32 HITS.pool.root.1
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root      9068 Apr  3 15:28 init_data.xml
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root    507249 Apr  3 14:11 input.tar.gz
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root   1249280 Apr  3 18:32 result.tar.gz
2025-04-03 20:32:19 (24660): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  3 14:11 start_atlas.sh
2025-04-03 20:32:19 (24660): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 20:32:19 (24660): VM Completion File Detected.
2025-04-03 20:32:19 (24660): Powering off VM.
2025-04-03 20:32:19 (24660): Successfully stopped VM.
2025-04-03 20:32:19 (24660): Deregistering VM. (boinc_56f72cdf34b656ac, slot#9)
2025-04-03 20:32:19 (24660): Removing network bandwidth throttle group from VM.
2025-04-03 20:32:20 (24660): Removing VM from VirtualBox.
20:32:25 (24660): called boinc_finish(0)

</stderr_txt>
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