Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 16:43:31 (83640): Detected: vboxwrapper 26206
2025-04-03 16:43:31 (83640): Detected: BOINC client v8.0.4
2025-04-03 16:43:31 (83640): Detected: VirtualBox VboxManage Interface (Version: 6.1.44)
2025-04-03 16:43:31 (83640): Detected: Sandbox Configuration Enabled
2025-04-03 16:43:31 (83640): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 16:43:31 (83640): Create VM. (boinc_75b1f7bd3d486f41, slot#2)
2025-04-03 16:43:31 (83640): Setting Memory Size for VM. (4200MB)
2025-04-03 16:43:31 (83640): Setting CPU Count for VM. (2)
2025-04-03 16:43:32 (83640): Setting Chipset Options for VM.
2025-04-03 16:43:32 (83640): Setting Graphics Controller Options for VM.
2025-04-03 16:43:32 (83640): Setting Boot Options for VM.
2025-04-03 16:43:32 (83640): Setting Network Configuration for NAT.
2025-04-03 16:43:32 (83640): Enabling VM Network Access.
2025-04-03 16:43:32 (83640): Disabling USB Support for VM.
2025-04-03 16:43:32 (83640): Disabling COM Port Support for VM.
2025-04-03 16:43:32 (83640): Disabling Audio Support for VM.
2025-04-03 16:43:32 (83640): Disabling Clipboard Support for VM.
2025-04-03 16:43:32 (83640): Disabling Drag and Drop Support for VM.
2025-04-03 16:43:32 (83640): Adding storage controller(s) to VM.
2025-04-03 16:43:32 (83640): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 16:43:32 (83640): Adding VirtualBox Guest Additions to VM.
2025-04-03 16:43:32 (83640): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 16:43:32 (83640): forwarding host port 63886 to guest port 80
2025-04-03 16:43:32 (83640): Enabling remote desktop for VM.
2025-04-03 16:43:33 (83640): Required extension pack not installed, remote desktop not enabled.
2025-04-03 16:43:33 (83640): Enabling shared directory for VM.
2025-04-03 16:43:33 (83640): Starting VM using VBoxManage interface. (boinc_75b1f7bd3d486f41, slot#2)
2025-04-03 16:43:34 (83640): Successfully started VM. (PID = '83707')
2025-04-03 16:43:34 (83640): Reporting VM Process ID to BOINC.
2025-04-03 16:43:34 (83640): Guest Log: BIOS: VirtualBox 6.1.44
2025-04-03 16:43:34 (83640): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 16:43:34 (83640): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 16:43:34 (83640): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 16:43:34 (83640): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 16:43:34 (83640): Detected: Web Application Enabled (http://localhost:63886)
2025-04-03 16:43:34 (83640): Preference change detected
2025-04-03 16:43:34 (83640): Setting CPU throttle for VM. (100%)
2025-04-03 16:43:34 (83640): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 16:43:36 (83640): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 16:43:36 (83640): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 16:43:58 (83640): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 16:43:58 (83640): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 16:43:58 (83640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 16:44:11 (83640): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 16:44:11 (83640): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 16:44:28 (83640): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000266 main     Log opened 2025-04-03T14:44:26.296115000Z
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000444 main     OS Product: Linux
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000511 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000601 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000680 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000682 main     Process ID: 1224
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.000682 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 16:44:28 (83640): Guest Log: 00:00:00.002408 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 16:44:29 (83640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 16:44:29 (83640): Guest Log: [INFO] Mounting shared directory
2025-04-03 16:44:29 (83640): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 16:44:32 (83640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 16:44:32 (83640): Guest Log: [INFO] Detected branch: prod
2025-04-03 16:44:32 (83640): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 16:44:32 (83640): Guest Log: Copying input files
2025-04-03 16:44:34 (83640): Guest Log: Copied input files into RunAtlas.
2025-04-03 16:44:34 (83640): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 16:44:34 (83640): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 16:44:34 (83640): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 16:44:34 (83640): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 16:44:47 (83640): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 16:44:47 (83640): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 16:44:47 (83640): Guest Log: 2.6.3.0 1500 0 32100 144455 3 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 16:44:50 (83640): Guest Log: copied the webapp to /var/www
2025-04-03 16:44:50 (83640): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-03 16:44:50 (83640): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-03 16:44:50 (83640): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 16:44:50 (83640): Guest Log:  *** Starting ATLAS job. (PandaID=6584911308 taskID=44004367) ***
2025-04-03 16:47:38 (83640): Guest Log:  *** Job finished ***
2025-04-03 16:47:38 (83640): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:23,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:23,730 | INFO     | [data] copytool_out thread has finished
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:27,327 | INFO     | [data] queue_monitor thread has finished
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:28,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140710011012928)>', '<ExcThread(monitor, started 140709794633472)>']
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:29,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:29,084 | INFO     | [monitor] control thread has ended
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,395 | INFO     | all workflow threads have been joined
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,395 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,395 | INFO     | traces error code: 0
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,491 [wrapper] ==== pilot stdout END ====
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,498 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,505 [wrapper] pilotpid: 5802
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,512 [wrapper] Pilot exit status: 0
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,578 [wrapper] pandaids: 6584911308
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,625 [wrapper] cleanup supervisor_pilot  5808 5803
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,640 [wrapper] Test setup, not cleaning
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,648 [wrapper] apfmon messages muted
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,655 [wrapper] ==== wrapper stdout END ====
2025-04-03 16:47:38 (83640): Guest Log: 2025-04-03 14:47:33,662 [wrapper] ==== wrapper stderr END ====
2025-04-03 16:47:38 (83640): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 16:47:38 (83640): Guest Log:     "exeErrorCode": 65,
2025-04-03 16:47:38 (83640): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-03 16:47:38 (83640): Guest Log:     "pilotErrorCode": 1305,
2025-04-03 16:47:38 (83640): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-03 16:47:38 (83640): Guest Log:  *** Listing of results directory ***
2025-04-03 16:47:38 (83640): Guest Log: total 3848
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Apr  3 05:22 pilot3.tar.gz
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Apr  3 05:29 queuedata.json
2025-04-03 16:47:38 (83640): Guest Log: -rwx------. 1 atlas atlas   37140 Apr  3 05:30 runpilot2-wrapper.sh
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas    8297 Apr  3 14:44 init_data.xml
2025-04-03 16:47:38 (83640): Guest Log: -rw-r-----. 1 atlas atlas  507248 Apr  3 14:44 input.tar.gz
2025-04-03 16:47:38 (83640): Guest Log: -rw-r-----. 1 atlas atlas   17571 Apr  3 14:44 start_atlas.sh
2025-04-03 16:47:38 (83640): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  3 14:44 EVNT.44004365._000306.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas    2548 Apr  3 14:44 pandaJob.out
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas     424 Apr  3 14:44 setup.sh.local
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas  988211 Apr  3 14:45 agis_schedconf.cvmfs.json
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas 1603525 Apr  3 14:45 agis_ddmendpoints.agis.ALL.json
2025-04-03 16:47:38 (83640): Guest Log: drwx------. 4 atlas atlas    4096 Apr  3 14:45 pilot3
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas      95 Apr  3 14:46 pilot_heartbeat.json
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas     962 Apr  3 14:47 memory_monitor_summary.json
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas   20324 Apr  3 14:47 log.44004367._007649.job.log.tgz.1
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas    8377 Apr  3 14:47 heartbeat.json
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas    4588 Apr  3 14:47 pilotlog.txt
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas   66461 Apr  3 14:47 log.44004367._007649.job.log.1
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas     188 Apr  3 14:47 output.list
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr  3 14:47 runtime_log
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas  102400 Apr  3 14:47 result.tar.gz
2025-04-03 16:47:38 (83640): Guest Log: -rw-r--r--. 1 atlas atlas   10816 Apr  3 14:47 runtime_log.err
2025-04-03 16:47:38 (83640): Guest Log: -rw-------. 1 atlas atlas     651 Apr  3 14:47 7EvLDmTLSK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmNgGLDmBO5tHn.diag
2025-04-03 16:47:38 (83640): Guest Log: Looking for outputfile HITS.44004367._007649.pool.root.1
2025-04-03 16:47:38 (83640): Guest Log: No HITS file was produced
2025-04-03 16:47:38 (83640): Guest Log: Successfully finished the ATLAS job!
2025-04-03 16:47:38 (83640): Guest Log: Copying the results back to the shared directory!
2025-04-03 16:47:39 (83640): Guest Log:  *** Contents of shared directory: ***
2025-04-03 16:47:39 (83640): Guest Log: total 215828
2025-04-03 16:47:39 (83640): Guest Log: -rw-rw----. 1 root root 220363647 Apr  3 14:43 ATLAS.root_0
2025-04-03 16:47:39 (83640): Guest Log: -rw-rw-r--. 1 root root      8297 Apr  3 14:43 init_data.xml
2025-04-03 16:47:39 (83640): Guest Log: -rw-rw----. 1 root root    507248 Apr  3 14:43 input.tar.gz
2025-04-03 16:47:39 (83640): Guest Log: -rw-r--r--. 1 root root    102400 Apr  3  2025 result.tar.gz
2025-04-03 16:47:39 (83640): Guest Log: -rw-rw----. 1 root root     17571 Apr  3 14:43 start_atlas.sh
2025-04-03 16:47:39 (83640): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 16:47:39 (83640): VM Completion File Detected.
2025-04-03 16:47:39 (83640): Powering off VM.
2025-04-03 16:47:39 (83640): Successfully stopped VM.
2025-04-03 16:47:39 (83640): Deregistering VM. (boinc_75b1f7bd3d486f41, slot#2)
2025-04-03 16:47:39 (83640): Removing network bandwidth throttle group from VM.
2025-04-03 16:47:39 (83640): Removing VM from VirtualBox.
16:47:45 (83640): called boinc_finish(0)

</stderr_txt>
]]>

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