Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-04 12:40:06 (3800): Detected: vboxwrapper 26206
2025-04-04 12:40:06 (3800): Detected: BOINC client v7.16.5
2025-04-04 12:40:06 (3800): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-04-04 12:40:07 (3800): Successfully copied 'init_data.xml' to the shared directory.
2025-04-04 12:40:07 (3800): Create VM. (boinc_bfe49d70927fab16, slot#3)
2025-04-04 12:40:08 (3800): Setting Memory Size for VM. (4400MB)
2025-04-04 12:40:08 (3800): Setting CPU Count for VM. (4)
2025-04-04 12:40:08 (3800): Setting Chipset Options for VM.
2025-04-04 12:40:08 (3800): Setting Graphics Controller Options for VM.
2025-04-04 12:40:09 (3800): Setting Boot Options for VM.
2025-04-04 12:40:09 (3800): Setting Network Configuration for NAT.
2025-04-04 12:40:09 (3800): Enabling VM Network Access.
2025-04-04 12:40:09 (3800): Disabling USB Support for VM.
2025-04-04 12:40:10 (3800): Disabling COM Port Support for VM.
2025-04-04 12:40:10 (3800): Disabling LPT Port Support for VM.
2025-04-04 12:40:10 (3800): Disabling Audio Support for VM.
2025-04-04 12:40:10 (3800): Disabling Clipboard Support for VM.
2025-04-04 12:40:11 (3800): Disabling Drag and Drop Support for VM.
2025-04-04 12:40:11 (3800): Adding storage controller(s) to VM.
2025-04-04 12:40:11 (3800): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-04 12:40:12 (3800): Adding VirtualBox Guest Additions to VM.
2025-04-04 12:40:12 (3800): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-04 12:40:12 (3800): forwarding host port 55463 to guest port 80
2025-04-04 12:40:13 (3800): Enabling remote desktop for VM.
2025-04-04 12:40:13 (3800): Enabling shared directory for VM.
2025-04-04 12:40:14 (3800): Starting VM using VBoxManage interface. (boinc_bfe49d70927fab16, slot#3)
2025-04-04 12:40:18 (3800): Successfully started VM. (PID = '17876')
2025-04-04 12:40:18 (3800): Reporting VM Process ID to BOINC.
2025-04-04 12:40:18 (3800): Guest Log: BIOS: VirtualBox 5.2.44
2025-04-04 12:40:18 (3800): Guest Log: CPUID EDX: 0x178bfbff
2025-04-04 12:40:18 (3800): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-04 12:40:18 (3800): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-04 12:40:18 (3800): Detected: Web Application Enabled (http://localhost:55463)
2025-04-04 12:40:18 (3800): Detected: Remote Desktop Enabled (localhost:55464)
2025-04-04 12:40:18 (3800): Preference change detected
2025-04-04 12:40:18 (3800): Setting CPU throttle for VM. (100%)
2025-04-04 12:40:18 (3800): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-04 12:40:20 (3800): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-04 12:40:20 (3800): Guest Log: BIOS: Booting from Hard Disk...
2025-04-04 12:40:23 (3800): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-04 12:40:23 (3800): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-04 12:40:23 (3800): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-04 12:40:30 (3800): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-04 12:40:30 (3800): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-04 12:40:36 (3800): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000168 main     Log opened 2025-04-04T12:40:34.630908000Z
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000318 main     OS Product: Linux
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000364 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000395 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000435 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000435 main     Process ID: 1303
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.000436 main     Package type: LINUX_64BITS_GENERIC
2025-04-04 12:40:36 (3800): Guest Log: 00:00:00.001678 main     5.2.32 r132073 started. Verbose level = 0
2025-04-04 12:40:36 (3800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-04 12:40:36 (3800): Guest Log: [INFO] Mounting shared directory
2025-04-04 12:40:36 (3800): Guest Log: [INFO] Checking for init_data.xml
2025-04-04 12:40:39 (3800): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-04 12:40:39 (3800): Guest Log: [INFO] Detected branch: prod
2025-04-04 12:40:39 (3800): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-04 12:40:39 (3800): Guest Log: Copying input files
2025-04-04 12:40:41 (3800): Guest Log: Copied input files into RunAtlas.
2025-04-04 12:40:41 (3800): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-04 12:40:41 (3800): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-04 12:40:41 (3800): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-04 12:40:41 (3800): Guest Log: Further information can be found at the LHC@home message board.
2025-04-04 12:40:46 (3800): Guest Log: 00:00:10.006405 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 750 521 000ns (GuestNow=1 743 759 645 883 788 000 ns GuestLast=1 743 770 434 634 309 000 ns fSetTimeLastLoop=true )
2025-04-04 12:40:49 (3800): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-04 12:40:49 (3800): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-04 12:40:49 (3800): Guest Log: 2.6.3.0 1577 0 32196 144484 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-04 12:40:50 (3800): Guest Log: copied the webapp to /var/www
2025-04-04 12:40:50 (3800): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-04 12:40:50 (3800): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-04 12:40:50 (3800): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-04 12:40:50 (3800): Guest Log:  *** Starting ATLAS job. (PandaID=6584908567 taskID=44004367) ***
2025-04-04 14:20:22 (3800): Status Report: Elapsed Time: '6000.000000'
2025-04-04 14:20:22 (3800): Status Report: CPU Time: '19970.812500'
2025-04-04 16:00:25 (3800): Status Report: Elapsed Time: '12000.000000'
2025-04-04 16:00:25 (3800): Status Report: CPU Time: '42501.421875'
2025-04-04 16:16:45 (3800): Guest Log:  *** Job finished ***
2025-04-04 16:16:45 (3800): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:34,264 | INFO     | [data] queue_monitor thread has finished
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:37,359 | INFO     | job.realtimelogging is not enabled
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:38,359 | INFO     | [payload] run_realtimelog thread has finished
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:39,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821490886464)>', '<ExcThread(monitor, started 139820781270784)>']
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:40,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:40,039 | INFO     | [monitor] control thread has ended
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,716 | INFO     | all workflow threads have been joined
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,716 | INFO     | end of generic workflow (traces error code: 0)
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,716 | INFO     | traces error code: 0
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,829 [wrapper] ==== pilot stdout END ====
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,836 [wrapper] ==== wrapper stdout RESUME ====
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,841 [wrapper] pilotpid: 5904
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,845 [wrapper] Pilot exit status: 0
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,971 [wrapper] pandaids: 6584908567
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:44,999 [wrapper] cleanup supervisor_pilot 12721 5905
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:45,005 [wrapper] Test setup, not cleaning
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:45,009 [wrapper] apfmon messages muted
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:45,014 [wrapper] ==== wrapper stdout END ====
2025-04-04 16:16:45 (3800): Guest Log: 2025-04-04 13:16:45,018 [wrapper] ==== wrapper stderr END ====
2025-04-04 16:16:45 (3800): Guest Log:  *** Error codes and diagnostics ***
2025-04-04 16:16:45 (3800): Guest Log:     "exeErrorCode": 0,
2025-04-04 16:16:45 (3800): Guest Log:     "exeErrorDiag": "",
2025-04-04 16:16:45 (3800): Guest Log:     "pilotErrorCode": 0,
2025-04-04 16:16:45 (3800): Guest Log:     "pilotErrorDiag": "",
2025-04-04 16:16:45 (3800): Guest Log:  *** Listing of results directory ***
2025-04-04 16:16:45 (3800): Guest Log: total 195092
2025-04-04 16:16:45 (3800): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  3 02:26 pilot3.tar.gz
2025-04-04 16:16:45 (3800): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  3 02:44 queuedata.json
2025-04-04 16:16:45 (3800): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  3 02:45 runpilot2-wrapper.sh
2025-04-04 16:16:45 (3800): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Apr  4 09:40 init_data.xml
2025-04-04 16:16:45 (3800): Guest Log: -rwxr-xr-x. 1 atlas atlas    507242 Apr  4 09:40 input.tar.gz
2025-04-04 16:16:45 (3800): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  4 09:40 start_atlas.sh
2025-04-04 16:16:45 (3800): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 09:40 EVNT.44004365._000259.pool.root.1 -> /data/./ATLAS.root_0
2025-04-04 16:16:45 (3800): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr  4 09:40 pandaJob.out
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 09:40 setup.sh.local
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas    979626 Apr  4 09:41 agis_schedconf.cvmfs.json
2025-04-04 16:16:45 (3800): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 09:41 pilot3
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 13:15 pilot_heartbeat.json
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas 193035150 Apr  4 13:15 HITS.44004367._006475.pool.root.1
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas      1033 Apr  4 13:16 memory_monitor_summary.json
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  4 13:16 agis_ddmendpoints.agis.ALL.json
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas    332875 Apr  4 13:16 log.44004367._006475.job.log.tgz.1
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas      7726 Apr  4 13:16 heartbeat.json
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas      4660 Apr  4 13:16 pilotlog.txt
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas   1155177 Apr  4 13:16 log.44004367._006475.job.log.1
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 13:16 output.list
2025-04-04 16:16:45 (3800): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 13:16 runtime_log
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas   1505280 Apr  4 13:16 result.tar.gz
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas       671 Apr  4 13:16 SJHLDm3kPK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmYTGLDmN6QTcm.diag
2025-04-04 16:16:45 (3800): Guest Log: -rw-r--r--. 1 atlas atlas     10982 Apr  4 13:16 runtime_log.err
2025-04-04 16:16:45 (3800): Guest Log: Looking for outputfile HITS.44004367._006475.pool.root.1
2025-04-04 16:16:45 (3800): Guest Log: HITS file was successfully produced
2025-04-04 16:16:45 (3800): Guest Log: -rw-------. 1 atlas atlas 193035150 Apr  4 13:15 /home/atlas/RunAtlas/HITS.44004367._006475.pool.root.1
2025-04-04 16:16:46 (3800): Guest Log: Successfully finished the ATLAS job!
2025-04-04 16:16:46 (3800): Guest Log: Copying the results back to the shared directory!
2025-04-04 16:16:46 (3800): Guest Log:  *** Contents of shared directory: ***
2025-04-04 16:16:47 (3800): Guest Log: total 407128
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root 221813486 Apr  4 09:40 ATLAS.root_0
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root 193035150 Apr  4 13:16 HITS.pool.root.1
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root      8857 Apr  4 09:40 init_data.xml
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root    507242 Apr  3 11:21 input.tar.gz
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root   1505280 Apr  4 13:16 result.tar.gz
2025-04-04 16:16:47 (3800): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  3 11:21 start_atlas.sh
2025-04-04 16:16:47 (3800): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-04 16:16:47 (3800): VM Completion File Detected.
2025-04-04 16:16:47 (3800): Powering off VM.
2025-04-04 16:16:48 (3800): Successfully stopped VM.
2025-04-04 16:16:48 (3800): Deregistering VM. (boinc_bfe49d70927fab16, slot#3)
2025-04-04 16:16:48 (3800): Removing network bandwidth throttle group from VM.
2025-04-04 16:16:49 (3800): Removing VM from VirtualBox.
16:16:54 (3800): called boinc_finish(0)

</stderr_txt>
]]>

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