Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-03 14:27:43 (10140): Detected: vboxwrapper 26206
2025-04-03 14:27:43 (10140): Detected: BOINC client v8.0.2
2025-04-03 14:27:44 (10140): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-03 14:27:45 (10140): Successfully copied 'init_data.xml' to the shared directory.
2025-04-03 14:27:45 (10140): Create VM. (boinc_f7f501e8cde8f681, slot#1)
2025-04-03 14:27:46 (10140): Setting Memory Size for VM. (4600MB)
2025-04-03 14:27:46 (10140): Setting CPU Count for VM. (6)
2025-04-03 14:27:46 (10140): Setting Chipset Options for VM.
2025-04-03 14:27:47 (10140): Setting Graphics Controller Options for VM.
2025-04-03 14:27:47 (10140): Setting Boot Options for VM.
2025-04-03 14:27:47 (10140): Setting Network Configuration for NAT.
2025-04-03 14:27:48 (10140): Enabling VM Network Access.
2025-04-03 14:27:48 (10140): Disabling USB Support for VM.
2025-04-03 14:27:48 (10140): Disabling COM Port Support for VM.
2025-04-03 14:27:48 (10140): Disabling LPT Port Support for VM.
2025-04-03 14:27:49 (10140): Disabling Audio Support for VM.
2025-04-03 14:27:49 (10140): Disabling Clipboard Support for VM.
2025-04-03 14:27:49 (10140): Disabling Drag and Drop Support for VM.
2025-04-03 14:27:50 (10140): Adding storage controller(s) to VM.
2025-04-03 14:27:50 (10140): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-03 14:27:53 (10140): Adding VirtualBox Guest Additions to VM.
2025-04-03 14:27:53 (10140): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-03 14:27:53 (10140): forwarding host port 54686 to guest port 80
2025-04-03 14:27:54 (10140): Enabling remote desktop for VM.
2025-04-03 14:27:54 (10140): Required extension pack not installed, remote desktop not enabled.
2025-04-03 14:27:54 (10140): Enabling shared directory for VM.
2025-04-03 14:27:55 (10140): Starting VM using VBoxManage interface. (boinc_f7f501e8cde8f681, slot#1)
2025-04-03 14:28:03 (10140): Successfully started VM. (PID = '18956')
2025-04-03 14:28:03 (10140): Reporting VM Process ID to BOINC.
2025-04-03 14:28:03 (10140): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-03 14:28:03 (10140): Guest Log: CPUID EDX: 0x178bfbff
2025-04-03 14:28:03 (10140): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-03 14:28:03 (10140): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-03 14:28:03 (10140): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-03 14:28:03 (10140): Detected: Web Application Enabled (http://localhost:54686)
2025-04-03 14:28:03 (10140): Preference change detected
2025-04-03 14:28:03 (10140): Setting CPU throttle for VM. (100%)
2025-04-03 14:28:03 (10140): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-03 14:28:05 (10140): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-03 14:28:05 (10140): Guest Log: BIOS: Booting from Hard Disk...
2025-04-03 14:28:08 (10140): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-03 14:28:08 (10140): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-03 14:28:08 (10140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 14:28:15 (10140): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 14:28:15 (10140): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 14:28:22 (10140): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000230 main     Log opened 2025-04-03T14:28:20.502393000Z
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000449 main     OS Product: Linux
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000499 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000540 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000582 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000584 main     Process ID: 1295
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.000585 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 14:28:22 (10140): Guest Log: 00:00:00.002167 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 14:28:23 (10140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 14:28:23 (10140): Guest Log: [INFO] Mounting shared directory
2025-04-03 14:28:23 (10140): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 14:28:29 (10140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 14:28:29 (10140): Guest Log: [INFO] Detected branch: prod
2025-04-03 14:28:30 (10140): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 14:28:30 (10140): Guest Log: Copying input files
2025-04-03 14:28:32 (10140): Guest Log: Copied input files into RunAtlas.
2025-04-03 14:28:32 (10140): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 14:28:32 (10140): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 14:28:32 (10140): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 14:28:32 (10140): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 14:28:32 (10140): Guest Log: 00:00:10.104446 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 323 601 000ns (GuestNow=1 743 683 312 184 842 000 ns GuestLast=1 743 690 500 508 443 000 ns fSetTimeLastLoop=true )
2025-04-03 14:28:40 (10140): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 14:28:41 (10140): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 14:28:41 (10140): Guest Log: 2.6.3.0 1574 0 30088 144452 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 14:28:42 (10140): Guest Log: copied the webapp to /var/www
2025-04-03 14:28:42 (10140): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-03 14:28:42 (10140): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-03 14:28:43 (10140): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 14:28:43 (10140): Guest Log:  *** Starting ATLAS job. (PandaID=6584907480 taskID=44004367) ***
2025-04-03 14:43:13 (10140): Guest Log:  *** Job finished ***
2025-04-03 14:43:13 (10140): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:42:58,201 | INFO     | [job] control thread has finished
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:42:58,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:02,625 | INFO     | [data] queue_monitor thread has finished
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:04,497 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278864181056)>', '<ExcThread(monitor, started 140278572762880)>']
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:04,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:04,560 | INFO     | [monitor] control thread has ended
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,501 | INFO     | all workflow threads have been joined
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,502 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,503 | INFO     | traces error code: 0
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,695 [wrapper] ==== pilot stdout END ====
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,705 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,715 [wrapper] pilotpid: 5930
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:09,725 [wrapper] Pilot exit status: 0
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,246 [wrapper] pandaids: 6584907480
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,351 [wrapper] cleanup supervisor_pilot  5936 5931
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,361 [wrapper] Test setup, not cleaning
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,370 [wrapper] apfmon messages muted
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,380 [wrapper] ==== wrapper stdout END ====
2025-04-03 14:43:13 (10140): Guest Log: 2025-04-03 12:43:10,389 [wrapper] ==== wrapper stderr END ====
2025-04-03 14:43:13 (10140): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 14:43:13 (10140): Guest Log:     "exeErrorCode": 65,
2025-04-03 14:43:13 (10140): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5848.51 KB/s",
2025-04-03 14:43:13 (10140): Guest Log:     "pilotErrorCode": 1305,
2025-04-03 14:43:13 (10140): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5848.51 KB/s",
2025-04-03 14:43:13 (10140): Guest Log:  *** Listing of results directory ***
2025-04-03 14:43:13 (10140): Guest Log: total 4152
2025-04-03 14:43:13 (10140): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Apr  3 01:28 pilot3.tar.gz
2025-04-03 14:43:13 (10140): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Apr  3 01:59 queuedata.json
2025-04-03 14:43:13 (10140): Guest Log: -rwx------. 1 atlas atlas   37140 Apr  3 02:03 runpilot2-wrapper.sh
2025-04-03 14:43:13 (10140): Guest Log: -rwxr-xr-x. 1 atlas atlas    8840 Apr  3 12:28 init_data.xml
2025-04-03 14:43:13 (10140): Guest Log: -rwxr-xr-x. 1 atlas atlas  507248 Apr  3 12:28 input.tar.gz
2025-04-03 14:43:13 (10140): Guest Log: -rwxr-xr-x. 1 atlas atlas   17571 Apr  3 12:28 start_atlas.sh
2025-04-03 14:43:13 (10140): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  3 12:28 EVNT.44004365._000245.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 14:43:13 (10140): Guest Log: -rw-r--r--. 1 atlas atlas    2548 Apr  3 12:28 pandaJob.out
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas     424 Apr  3 12:29 setup.sh.local
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas  992135 Apr  3 12:31 agis_schedconf.cvmfs.json
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas 1603525 Apr  3 12:31 agis_ddmendpoints.agis.ALL.json
2025-04-03 14:43:13 (10140): Guest Log: drwx------. 4 atlas atlas    4096 Apr  3 12:32 pilot3
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas   51076 Apr  3 12:40 log.44004367._006121.job.log.tgz.1
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas    8261 Apr  3 12:42 heartbeat.json
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas      95 Apr  3 12:42 pilot_heartbeat.json
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas    4402 Apr  3 12:43 pilotlog.txt
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas  188680 Apr  3 12:43 log.44004367._006121.job.log.1
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas     188 Apr  3 12:43 output.list
2025-04-03 14:43:13 (10140): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr  3 12:43 runtime_log
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas  256000 Apr  3 12:43 result.tar.gz
2025-04-03 14:43:13 (10140): Guest Log: -rw-r--r--. 1 atlas atlas   10780 Apr  3 12:43 runtime_log.err
2025-04-03 14:43:13 (10140): Guest Log: -rw-------. 1 atlas atlas     642 Apr  3 12:43 296LDmH6OK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmYZsKDmaA1ZTo.diag
2025-04-03 14:43:13 (10140): Guest Log: Looking for outputfile HITS.44004367._006121.pool.root.1
2025-04-03 14:43:13 (10140): Guest Log: No HITS file was produced
2025-04-03 14:43:13 (10140): Guest Log: Successfully finished the ATLAS job!
2025-04-03 14:43:13 (10140): Guest Log: Copying the results back to the shared directory!
2025-04-03 14:43:13 (10140): Guest Log:  *** Contents of shared directory: ***
2025-04-03 14:43:13 (10140): Guest Log: total 219608
2025-04-03 14:43:13 (10140): Guest Log: -rwxrwxrwx. 1 root root 224077396 Apr  3 12:27 ATLAS.root_0
2025-04-03 14:43:13 (10140): Guest Log: -rwxrwxrwx. 1 root root      8840 Apr  3 12:27 init_data.xml
2025-04-03 14:43:13 (10140): Guest Log: -rwxrwxrwx. 1 root root    507248 Apr  3 06:35 input.tar.gz
2025-04-03 14:43:13 (10140): Guest Log: -rwxrwxrwx. 1 root root    256000 Apr  3 12:43 result.tar.gz
2025-04-03 14:43:13 (10140): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  3 06:35 start_atlas.sh
2025-04-03 14:43:13 (10140): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 14:43:13 (10140): VM Completion File Detected.
2025-04-03 14:43:13 (10140): Powering off VM.
2025-04-03 14:43:14 (10140): Successfully stopped VM.
2025-04-03 14:43:14 (10140): Deregistering VM. (boinc_f7f501e8cde8f681, slot#1)
2025-04-03 14:43:14 (10140): Removing network bandwidth throttle group from VM.
2025-04-03 14:43:15 (10140): Removing VM from VirtualBox.
14:43:20 (10140): called boinc_finish(0)

</stderr_txt>
]]>

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