Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-04 08:41:35 (15948): Detected: vboxwrapper 26206
2025-04-04 08:41:35 (15948): Detected: BOINC client v7.16.5
2025-04-04 08:41:35 (15948): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-04-04 08:41:36 (15948): Successfully copied 'init_data.xml' to the shared directory.
2025-04-04 08:41:36 (15948): Create VM. (boinc_b69d9bca1757681d, slot#3)
2025-04-04 08:41:37 (15948): Setting Memory Size for VM. (4400MB)
2025-04-04 08:41:37 (15948): Setting CPU Count for VM. (4)
2025-04-04 08:41:37 (15948): Setting Chipset Options for VM.
2025-04-04 08:41:37 (15948): Setting Graphics Controller Options for VM.
2025-04-04 08:41:38 (15948): Setting Boot Options for VM.
2025-04-04 08:41:38 (15948): Setting Network Configuration for NAT.
2025-04-04 08:41:38 (15948): Enabling VM Network Access.
2025-04-04 08:41:38 (15948): Disabling USB Support for VM.
2025-04-04 08:41:39 (15948): Disabling COM Port Support for VM.
2025-04-04 08:41:39 (15948): Disabling LPT Port Support for VM.
2025-04-04 08:41:39 (15948): Disabling Audio Support for VM.
2025-04-04 08:41:39 (15948): Disabling Clipboard Support for VM.
2025-04-04 08:41:40 (15948): Disabling Drag and Drop Support for VM.
2025-04-04 08:41:40 (15948): Adding storage controller(s) to VM.
2025-04-04 08:41:40 (15948): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-04 08:41:41 (15948): Adding VirtualBox Guest Additions to VM.
2025-04-04 08:41:41 (15948): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-04 08:41:41 (15948): forwarding host port 53588 to guest port 80
2025-04-04 08:41:41 (15948): Enabling remote desktop for VM.
2025-04-04 08:41:42 (15948): Enabling shared directory for VM.
2025-04-04 08:41:42 (15948): Starting VM using VBoxManage interface. (boinc_b69d9bca1757681d, slot#3)
2025-04-04 08:41:46 (15948): Successfully started VM. (PID = '2984')
2025-04-04 08:41:46 (15948): Reporting VM Process ID to BOINC.
2025-04-04 08:41:46 (15948): Guest Log: BIOS: VirtualBox 5.2.44
2025-04-04 08:41:46 (15948): Guest Log: CPUID EDX: 0x178bfbff
2025-04-04 08:41:46 (15948): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-04 08:41:46 (15948): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-04 08:41:46 (15948): Detected: Web Application Enabled (http://localhost:53588)
2025-04-04 08:41:46 (15948): Detected: Remote Desktop Enabled (localhost:53589)
2025-04-04 08:41:46 (15948): Preference change detected
2025-04-04 08:41:46 (15948): Setting CPU throttle for VM. (100%)
2025-04-04 08:41:46 (15948): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-04 08:41:48 (15948): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-04 08:41:48 (15948): Guest Log: BIOS: Booting from Hard Disk...
2025-04-04 08:41:51 (15948): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-04 08:41:51 (15948): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-04 08:41:51 (15948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-04 08:41:56 (15948): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-04 08:41:56 (15948): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-04 08:42:01 (15948): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000161 main     Log opened 2025-04-04T08:41:59.894678000Z
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000254 main     OS Product: Linux
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000306 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000327 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000328 main     Process ID: 1300
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.000328 main     Package type: LINUX_64BITS_GENERIC
2025-04-04 08:42:01 (15948): Guest Log: 00:00:00.001260 main     5.2.32 r132073 started. Verbose level = 0
2025-04-04 08:42:01 (15948): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-04 08:42:01 (15948): Guest Log: [INFO] Mounting shared directory
2025-04-04 08:42:01 (15948): Guest Log: [INFO] Checking for init_data.xml
2025-04-04 08:42:11 (15948): Guest Log: 00:00:10.003393 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 638 433 000ns (GuestNow=1 743 745 331 259 211 000 ns GuestLast=1 743 756 119 897 644 000 ns fSetTimeLastLoop=true )
2025-04-04 08:43:04 (15948): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-04 08:43:04 (15948): Guest Log: [INFO] Detected branch: prod
2025-04-04 08:43:04 (15948): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-04 08:43:04 (15948): Guest Log: Copying input files
2025-04-04 08:43:06 (15948): Guest Log: Copied input files into RunAtlas.
2025-04-04 08:43:06 (15948): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-04 08:43:06 (15948): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-04 08:43:06 (15948): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-04 08:43:06 (15948): Guest Log: Further information can be found at the LHC@home message board.
2025-04-04 08:44:50 (15948): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-04 08:44:50 (15948): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-04 08:44:50 (15948): Guest Log: 2.6.3.0 1613 1 32168 144478 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-04 08:44:51 (15948): Guest Log: copied the webapp to /var/www
2025-04-04 08:44:51 (15948): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-04 08:44:51 (15948): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-04 08:44:51 (15948): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-04 08:44:51 (15948): Guest Log:  *** Starting ATLAS job. (PandaID=6584892156 taskID=44004367) ***
2025-04-04 10:21:50 (15948): Status Report: Elapsed Time: '6000.000000'
2025-04-04 10:21:50 (15948): Status Report: CPU Time: '16120.640625'
2025-04-04 12:01:53 (15948): Status Report: Elapsed Time: '12000.000000'
2025-04-04 12:01:53 (15948): Status Report: CPU Time: '37049.562500'
2025-04-04 12:39:54 (15948): Guest Log:  *** Job finished ***
2025-04-04 12:39:54 (15948): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:41,212 | INFO     | [data] queue_monitor thread has finished
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:45,926 | INFO     | job.realtimelogging is not enabled
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:46,928 | INFO     | [payload] run_realtimelog thread has finished
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:47,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410326636352)>', '<ExcThread(monitor, started 140410030634752)>']
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:48,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:48,246 | INFO     | [monitor] control thread has ended
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:52,895 | INFO     | all workflow threads have been joined
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:52,895 | INFO     | end of generic workflow (traces error code: 0)
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:52,895 | INFO     | traces error code: 0
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:52,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,003 [wrapper] ==== pilot stdout END ====
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,008 [wrapper] ==== wrapper stdout RESUME ====
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,014 [wrapper] pilotpid: 5959
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,019 [wrapper] Pilot exit status: 0
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,118 [wrapper] pandaids: 6584892156
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,150 [wrapper] cleanup supervisor_pilot 13169 5960
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,157 [wrapper] Test setup, not cleaning
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,162 [wrapper] apfmon messages muted
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,169 [wrapper] ==== wrapper stdout END ====
2025-04-04 12:39:54 (15948): Guest Log: 2025-04-04 09:39:53,175 [wrapper] ==== wrapper stderr END ====
2025-04-04 12:39:54 (15948): Guest Log:  *** Error codes and diagnostics ***
2025-04-04 12:39:54 (15948): Guest Log:     "exeErrorCode": 0,
2025-04-04 12:39:54 (15948): Guest Log:     "exeErrorDiag": "",
2025-04-04 12:39:54 (15948): Guest Log:     "pilotErrorCode": 0,
2025-04-04 12:39:54 (15948): Guest Log:     "pilotErrorDiag": "",
2025-04-04 12:39:54 (15948): Guest Log:  *** Listing of results directory ***
2025-04-04 12:39:54 (15948): Guest Log: total 189196
2025-04-04 12:39:54 (15948): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  2 17:29 pilot3.tar.gz
2025-04-04 12:39:54 (15948): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  2 17:54 queuedata.json
2025-04-04 12:39:54 (15948): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  2 17:54 runpilot2-wrapper.sh
2025-04-04 12:39:54 (15948): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Apr  4 05:43 init_data.xml
2025-04-04 12:39:54 (15948): Guest Log: -rwxr-xr-x. 1 atlas atlas    507241 Apr  4 05:43 input.tar.gz
2025-04-04 12:39:54 (15948): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  4 05:43 start_atlas.sh
2025-04-04 12:39:54 (15948): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  4 05:43 EVNT.44004365._000118.pool.root.1 -> /data/./ATLAS.root_0
2025-04-04 12:39:54 (15948): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr  4 05:44 pandaJob.out
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas       424 Apr  4 05:44 setup.sh.local
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas    979986 Apr  4 05:46 agis_schedconf.cvmfs.json
2025-04-04 12:39:54 (15948): Guest Log: drwx------. 4 atlas atlas      4096 Apr  4 05:46 pilot3
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas 186941558 Apr  4 09:38 HITS.44004367._002933.pool.root.1
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas        95 Apr  4 09:38 pilot_heartbeat.json
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas      1045 Apr  4 09:39 memory_monitor_summary.json
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas   1603525 Apr  4 09:39 agis_ddmendpoints.agis.ALL.json
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas    316074 Apr  4 09:39 log.44004367._002933.job.log.tgz.1
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas      7726 Apr  4 09:39 heartbeat.json
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas      4351 Apr  4 09:39 pilotlog.txt
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas   1198800 Apr  4 09:39 log.44004367._002933.job.log.1
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas       357 Apr  4 09:39 output.list
2025-04-04 12:39:54 (15948): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  4 09:39 runtime_log
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas   1536000 Apr  4 09:39 result.tar.gz
2025-04-04 12:39:54 (15948): Guest Log: -rw-r--r--. 1 atlas atlas     10982 Apr  4 09:39 runtime_log.err
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas       671 Apr  4 09:39 rDoNDmWTHK7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmsrFLDm2Yv0Qm.diag
2025-04-04 12:39:54 (15948): Guest Log: Looking for outputfile HITS.44004367._002933.pool.root.1
2025-04-04 12:39:54 (15948): Guest Log: HITS file was successfully produced
2025-04-04 12:39:54 (15948): Guest Log: -rw-------. 1 atlas atlas 186941558 Apr  4 09:38 /home/atlas/RunAtlas/HITS.44004367._002933.pool.root.1
2025-04-04 12:39:56 (15948): Guest Log: Successfully finished the ATLAS job!
2025-04-04 12:39:56 (15948): Guest Log: Copying the results back to the shared directory!
2025-04-04 12:39:56 (15948): Guest Log:  *** Contents of shared directory: ***
2025-04-04 12:39:56 (15948): Guest Log: total 400368
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root 220953162 Apr  4 05:41 ATLAS.root_0
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root 186941558 Apr  4 09:39 HITS.pool.root.1
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root      8857 Apr  4 05:41 init_data.xml
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root    507241 Apr  3 05:16 input.tar.gz
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root   1536000 Apr  4 09:39 result.tar.gz
2025-04-04 12:39:56 (15948): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  3 05:16 start_atlas.sh
2025-04-04 12:39:56 (15948): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-04 12:39:56 (15948): VM Completion File Detected.
2025-04-04 12:39:56 (15948): Powering off VM.
2025-04-04 12:39:56 (15948): Successfully stopped VM.
2025-04-04 12:39:56 (15948): Deregistering VM. (boinc_b69d9bca1757681d, slot#3)
2025-04-04 12:39:56 (15948): Removing network bandwidth throttle group from VM.
2025-04-04 12:39:57 (15948): Removing VM from VirtualBox.
12:40:02 (15948): called boinc_finish(0)

</stderr_txt>
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