Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-02 22:31:22 (4064): Detected: vboxwrapper 26206
2025-04-02 22:31:22 (4064): Detected: BOINC client v8.0.4
2025-04-02 22:31:22 (4064): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-02 22:31:23 (4064): Successfully copied 'init_data.xml' to the shared directory.
2025-04-02 22:31:23 (4064): Create VM. (boinc_9b6e9697a8c4f638, slot#35)
2025-04-02 22:31:24 (4064): Setting Memory Size for VM. (4096MB)
2025-04-02 22:31:24 (4064): Setting CPU Count for VM. (1)
2025-04-02 22:31:24 (4064): Setting Chipset Options for VM.
2025-04-02 22:31:24 (4064): Setting Graphics Controller Options for VM.
2025-04-02 22:31:25 (4064): Setting Boot Options for VM.
2025-04-02 22:31:25 (4064): Setting Network Configuration for NAT.
2025-04-02 22:31:25 (4064): Enabling VM Network Access.
2025-04-02 22:31:25 (4064): Disabling USB Support for VM.
2025-04-02 22:31:26 (4064): Disabling COM Port Support for VM.
2025-04-02 22:31:26 (4064): Disabling LPT Port Support for VM.
2025-04-02 22:31:26 (4064): Disabling Audio Support for VM.
2025-04-02 22:31:26 (4064): Disabling Clipboard Support for VM.
2025-04-02 22:31:27 (4064): Disabling Drag and Drop Support for VM.
2025-04-02 22:31:27 (4064): Adding storage controller(s) to VM.
2025-04-02 22:31:27 (4064): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-02 22:31:28 (4064): Adding VirtualBox Guest Additions to VM.
2025-04-02 22:31:28 (4064): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-02 22:31:28 (4064): forwarding host port 60729 to guest port 80
2025-04-02 22:31:28 (4064): Enabling remote desktop for VM.
2025-04-02 22:31:29 (4064): Required extension pack not installed, remote desktop not enabled.
2025-04-02 22:31:29 (4064): Enabling shared directory for VM.
2025-04-02 22:31:29 (4064): Starting VM using VBoxManage interface. (boinc_9b6e9697a8c4f638, slot#35)
2025-04-02 22:31:33 (4064): Successfully started VM. (PID = '34364')
2025-04-02 22:31:33 (4064): Reporting VM Process ID to BOINC.
2025-04-02 22:31:33 (4064): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-02 22:31:33 (4064): Guest Log: CPUID EDX: 0x178bfbff
2025-04-02 22:31:33 (4064): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-02 22:31:33 (4064): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-02 22:31:33 (4064): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-02 22:31:33 (4064): Detected: Web Application Enabled (http://localhost:60729)
2025-04-02 22:31:33 (4064): Preference change detected
2025-04-02 22:31:33 (4064): Setting CPU throttle for VM. (100%)
2025-04-02 22:31:34 (4064): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-02 22:31:35 (4064): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-02 22:31:35 (4064): Guest Log: BIOS: Booting from Hard Disk...
2025-04-02 22:31:37 (4064): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-02 22:31:37 (4064): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-02 22:31:37 (4064): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-02 22:31:40 (4064): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-02 22:31:40 (4064): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-02 22:31:44 (4064): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000066 main     Log opened 2025-04-02T22:31:42.787029000Z
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000148 main     OS Product: Linux
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000162 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000173 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000184 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000184 main     Process ID: 1243
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000185 main     Package type: LINUX_64BITS_GENERIC
2025-04-02 22:31:44 (4064): Guest Log: 00:00:00.000903 main     5.2.32 r132073 started. Verbose level = 0
2025-04-02 22:31:44 (4064): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-02 22:31:44 (4064): Guest Log: [INFO] Mounting shared directory
2025-04-02 22:31:44 (4064): Guest Log: [INFO] Checking for init_data.xml
2025-04-02 22:31:46 (4064): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-02 22:31:46 (4064): Guest Log: [INFO] Detected branch: prod
2025-04-02 22:31:47 (4064): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-02 22:31:47 (4064): Guest Log: Copying input files
2025-04-02 22:31:47 (4064): Guest Log: Copied input files into RunAtlas.
2025-04-02 22:31:47 (4064): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-02 22:31:54 (4064): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-02 22:31:54 (4064): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-02 22:31:54 (4064): Guest Log: 2.6.3.0 1513 0 29500 144420 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-02 22:31:54 (4064): Guest Log: copied the webapp to /var/www
2025-04-02 22:31:54 (4064): Guest Log: core_number=1
2025-04-02 22:31:54 (4064): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-02 22:31:54 (4064): Guest Log:  *** Starting ATLAS job. (PandaID=6584890638 taskID=44004367) ***
2025-04-02 22:31:54 (4064): Guest Log: 00:00:10.009195 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 278 986 000ns (GuestNow=1 743 625 914 516 576 000 ns GuestLast=1 743 633 102 795 562 000 ns fSetTimeLastLoop=true )
2025-04-03 00:11:36 (4064): Status Report: Elapsed Time: '6000.000000'
2025-04-03 00:11:36 (4064): Status Report: CPU Time: '5775.734375'
2025-04-03 01:51:38 (4064): Status Report: Elapsed Time: '12000.000000'
2025-04-03 01:51:38 (4064): Status Report: CPU Time: '11750.859375'
2025-04-03 03:31:41 (4064): Status Report: Elapsed Time: '18000.000000'
2025-04-03 03:31:41 (4064): Status Report: CPU Time: '17721.484375'
2025-04-03 05:11:43 (4064): Status Report: Elapsed Time: '24000.000000'
2025-04-03 05:11:43 (4064): Status Report: CPU Time: '23693.609375'
2025-04-03 05:15:43 (4064): Guest Log:  *** Job finished ***
2025-04-03 05:15:43 (4064): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:23,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:23,155 | INFO     | [payload] validate_post thread has finished
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:27,156 | INFO     | [data] queue_monitor thread has finished
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:28,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075349374784)>', '<ExcThread(monitor, started 140074771535616)>']
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:28,551 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:28,551 | INFO     | [monitor] control thread has ended
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,370 | INFO     | all workflow threads have been joined
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,370 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,370 | INFO     | traces error code: 0
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,426 [wrapper] ==== pilot stdout END ====
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,428 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,430 [wrapper] pilotpid: 5762
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,431 [wrapper] Pilot exit status: 0
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,443 [wrapper] pandaids: 6584890638
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,451 [wrapper] cleanup supervisor_pilot 32644 5763
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,452 [wrapper] Test setup, not cleaning
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,454 [wrapper] apfmon messages muted
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,455 [wrapper] ==== wrapper stdout END ====
2025-04-03 05:15:43 (4064): Guest Log: 2025-04-03 03:15:33,456 [wrapper] ==== wrapper stderr END ====
2025-04-03 05:15:43 (4064): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 05:15:43 (4064): Guest Log:     "exeErrorCode": 0,
2025-04-03 05:15:43 (4064): Guest Log:     "exeErrorDiag": "",
2025-04-03 05:15:43 (4064): Guest Log:     "pilotErrorCode": 0,
2025-04-03 05:15:43 (4064): Guest Log:     "pilotErrorDiag": "",
2025-04-03 05:15:43 (4064): Guest Log:  *** Listing of results directory ***
2025-04-03 05:15:43 (4064): Guest Log: total 206188
2025-04-03 05:15:43 (4064): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  2 15:24 pilot3.tar.gz
2025-04-03 05:15:43 (4064): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  2 16:15 queuedata.json
2025-04-03 05:15:43 (4064): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  2 16:16 runpilot2-wrapper.sh
2025-04-03 05:15:43 (4064): Guest Log: -rwxr-xr-x. 1 atlas atlas      9321 Apr  2 20:31 init_data.xml
2025-04-03 05:15:43 (4064): Guest Log: -rwxr-xr-x. 1 atlas atlas    507239 Apr  2 20:31 input.tar.gz
2025-04-03 05:15:43 (4064): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  2 20:31 start_atlas.sh
2025-04-03 05:15:43 (4064): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  2 20:31 EVNT.44004365._000082.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 05:15:43 (4064): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr  2 20:31 pandaJob.out
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas       460 Apr  2 20:31 setup.sh.local
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas    991556 Apr  2 20:32 agis_schedconf.cvmfs.json
2025-04-03 05:15:43 (4064): Guest Log: drwx------. 4 atlas atlas      4096 Apr  2 20:32 pilot3
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas        95 Apr  3 03:14 pilot_heartbeat.json
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas 200725589 Apr  3 03:14 HITS.44004367._002032.pool.root.1
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas      1026 Apr  3 03:15 memory_monitor_summary.json
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas   1603449 Apr  3 03:15 agis_ddmendpoints.agis.ALL.json
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas    415099 Apr  3 03:15 log.44004367._002032.job.log.tgz.1
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas      7672 Apr  3 03:15 heartbeat.json
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas      4279 Apr  3 03:15 pilotlog.txt
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas   2900436 Apr  3 03:15 log.44004367._002032.job.log.1
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas       357 Apr  3 03:15 output.list
2025-04-03 05:15:43 (4064): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  3 03:15 runtime_log
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas   3338240 Apr  3 03:15 result.tar.gz
2025-04-03 05:15:43 (4064): Guest Log: -rw-r--r--. 1 atlas atlas     11175 Apr  3 03:15 runtime_log.err
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas       658 Apr  3 03:15 AMdMDmLwFK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmgCsKDmNbEEen.diag
2025-04-03 05:15:43 (4064): Guest Log: Looking for outputfile HITS.44004367._002032.pool.root.1
2025-04-03 05:15:43 (4064): Guest Log: HITS file was successfully produced
2025-04-03 05:15:43 (4064): Guest Log: -rw-------. 1 atlas atlas 200725589 Apr  3 03:14 /home/atlas/RunAtlas/HITS.44004367._002032.pool.root.1
2025-04-03 05:15:43 (4064): Guest Log: Successfully finished the ATLAS job!
2025-04-03 05:15:43 (4064): Guest Log: Copying the results back to the shared directory!
2025-04-03 05:15:43 (4064): Guest Log:  *** Contents of shared directory: ***
2025-04-03 05:15:43 (4064): Guest Log: total 418704
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root 224142110 Apr  2 20:31 ATLAS.root_0
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root 200725589 Apr  3  2025 HITS.pool.root.1
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root      9321 Apr  2 20:31 init_data.xml
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root    507239 Apr  2 20:31 input.tar.gz
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root   3338240 Apr  3  2025 result.tar.gz
2025-04-03 05:15:43 (4064): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  2 20:31 start_atlas.sh
2025-04-03 05:15:43 (4064): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 05:15:43 (4064): VM Completion File Detected.
2025-04-03 05:15:43 (4064): Powering off VM.
2025-04-03 05:15:44 (4064): Successfully stopped VM.
2025-04-03 05:15:44 (4064): Deregistering VM. (boinc_9b6e9697a8c4f638, slot#35)
2025-04-03 05:15:44 (4064): Removing network bandwidth throttle group from VM.
2025-04-03 05:15:44 (4064): Removing VM from VirtualBox.
05:15:49 (4064): called boinc_finish(0)

</stderr_txt>
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