Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-02 22:30:09 (34760): Detected: vboxwrapper 26206
2025-04-02 22:30:09 (34760): Detected: BOINC client v8.0.4
2025-04-02 22:30:09 (34760): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-02 22:30:10 (34760): Successfully copied 'init_data.xml' to the shared directory.
2025-04-02 22:30:10 (34760): Create VM. (boinc_80b0e753284bb62e, slot#22)
2025-04-02 22:30:11 (34760): Setting Memory Size for VM. (4096MB)
2025-04-02 22:30:11 (34760): Setting CPU Count for VM. (1)
2025-04-02 22:30:11 (34760): Setting Chipset Options for VM.
2025-04-02 22:30:11 (34760): Setting Graphics Controller Options for VM.
2025-04-02 22:30:12 (34760): Setting Boot Options for VM.
2025-04-02 22:30:12 (34760): Setting Network Configuration for NAT.
2025-04-02 22:30:12 (34760): Enabling VM Network Access.
2025-04-02 22:30:13 (34760): Disabling USB Support for VM.
2025-04-02 22:30:13 (34760): Disabling COM Port Support for VM.
2025-04-02 22:30:13 (34760): Disabling LPT Port Support for VM.
2025-04-02 22:30:13 (34760): Disabling Audio Support for VM.
2025-04-02 22:30:14 (34760): Disabling Clipboard Support for VM.
2025-04-02 22:30:14 (34760): Disabling Drag and Drop Support for VM.
2025-04-02 22:30:14 (34760): Adding storage controller(s) to VM.
2025-04-02 22:30:14 (34760): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-02 22:30:15 (34760): Adding VirtualBox Guest Additions to VM.
2025-04-02 22:30:15 (34760): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-02 22:30:15 (34760): forwarding host port 60622 to guest port 80
2025-04-02 22:30:16 (34760): Enabling remote desktop for VM.
2025-04-02 22:30:16 (34760): Required extension pack not installed, remote desktop not enabled.
2025-04-02 22:30:16 (34760): Enabling shared directory for VM.
2025-04-02 22:30:16 (34760): Starting VM using VBoxManage interface. (boinc_80b0e753284bb62e, slot#22)
2025-04-02 22:30:20 (34760): Successfully started VM. (PID = '16608')
2025-04-02 22:30:20 (34760): Reporting VM Process ID to BOINC.
2025-04-02 22:30:20 (34760): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-02 22:30:20 (34760): Guest Log: CPUID EDX: 0x178bfbff
2025-04-02 22:30:20 (34760): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-02 22:30:20 (34760): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-02 22:30:20 (34760): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-02 22:30:20 (34760): Detected: Web Application Enabled (http://localhost:60622)
2025-04-02 22:30:20 (34760): Preference change detected
2025-04-02 22:30:20 (34760): Setting CPU throttle for VM. (100%)
2025-04-02 22:30:21 (34760): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-02 22:30:22 (34760): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-02 22:30:22 (34760): Guest Log: BIOS: Booting from Hard Disk...
2025-04-02 22:30:24 (34760): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-02 22:30:24 (34760): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-02 22:30:24 (34760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-02 22:30:27 (34760): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-02 22:30:27 (34760): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-02 22:30:31 (34760): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000073 main     Log opened 2025-04-02T22:30:29.968156000Z
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000134 main     OS Product: Linux
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000148 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000158 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000170 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000170 main     Process ID: 1244
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.000170 main     Package type: LINUX_64BITS_GENERIC
2025-04-02 22:30:31 (34760): Guest Log: 00:00:00.001189 main     5.2.32 r132073 started. Verbose level = 0
2025-04-02 22:30:31 (34760): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-02 22:30:31 (34760): Guest Log: [INFO] Mounting shared directory
2025-04-02 22:30:31 (34760): Guest Log: [INFO] Checking for init_data.xml
2025-04-02 22:30:33 (34760): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-02 22:30:33 (34760): Guest Log: [INFO] Detected branch: prod
2025-04-02 22:30:33 (34760): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-02 22:30:33 (34760): Guest Log: Copying input files
2025-04-02 22:30:35 (34760): Guest Log: Copied input files into RunAtlas.
2025-04-02 22:30:35 (34760): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-02 22:30:41 (34760): Guest Log: 00:00:10.020817 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 222 865 000ns (GuestNow=1 743 625 841 757 007 000 ns GuestLast=1 743 633 029 979 872 000 ns fSetTimeLastLoop=true )
2025-04-02 22:30:42 (34760): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-02 22:30:42 (34760): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-02 22:30:42 (34760): Guest Log: 2.6.3.0 1514 0 29536 144420 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-02 22:30:43 (34760): Guest Log: copied the webapp to /var/www
2025-04-02 22:30:43 (34760): Guest Log: core_number=1
2025-04-02 22:30:43 (34760): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-02 22:30:43 (34760): Guest Log:  *** Starting ATLAS job. (PandaID=6583813648 taskID=43634898) ***
2025-04-03 00:10:23 (34760): Status Report: Elapsed Time: '6000.000000'
2025-04-03 00:10:23 (34760): Status Report: CPU Time: '5764.703125'
2025-04-03 01:50:25 (34760): Status Report: Elapsed Time: '12000.000000'
2025-04-03 01:50:25 (34760): Status Report: CPU Time: '11741.750000'
2025-04-03 03:30:28 (34760): Status Report: Elapsed Time: '18000.000000'
2025-04-03 03:30:28 (34760): Status Report: CPU Time: '17716.859375'
2025-04-03 05:10:30 (34760): Status Report: Elapsed Time: '24000.000000'
2025-04-03 05:10:30 (34760): Status Report: CPU Time: '23691.187500'
2025-04-03 06:50:33 (34760): Status Report: Elapsed Time: '30000.000000'
2025-04-03 06:50:33 (34760): Status Report: CPU Time: '29667.781250'
2025-04-03 08:30:35 (34760): Status Report: Elapsed Time: '36000.000000'
2025-04-03 08:30:35 (34760): Status Report: CPU Time: '35643.703125'
2025-04-03 09:57:39 (34760): Guest Log:  *** Job finished ***
2025-04-03 09:57:39 (34760): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:15,500 | INFO     | [payload] execute_payloads thread has finished
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:16,151 | INFO     | [data] copytool_out thread has finished
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:17,517 | INFO     | [data] queue_monitor thread has finished
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:19,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368323401536)>', '<ExcThread(monitor, started 140367877875456)>']
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:20,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:20,104 | INFO     | [monitor] control thread has ended
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,308 | INFO     | all workflow threads have been joined
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,309 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,309 | INFO     | traces error code: 0
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,379 [wrapper] ==== pilot stdout END ====
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,380 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,382 [wrapper] pilotpid: 5785
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,383 [wrapper] Pilot exit status: 0
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,398 [wrapper] pandaids: 6583813648
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,407 [wrapper] cleanup supervisor_pilot 29102 5786
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,409 [wrapper] Test setup, not cleaning
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,411 [wrapper] apfmon messages muted
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,413 [wrapper] ==== wrapper stdout END ====
2025-04-03 09:57:39 (34760): Guest Log: 2025-04-03 07:57:24,414 [wrapper] ==== wrapper stderr END ====
2025-04-03 09:57:39 (34760): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 09:57:39 (34760): Guest Log:     "exeErrorCode": 0,
2025-04-03 09:57:39 (34760): Guest Log:     "exeErrorDiag": "",
2025-04-03 09:57:39 (34760): Guest Log:     "pilotErrorCode": 0,
2025-04-03 09:57:39 (34760): Guest Log:     "pilotErrorDiag": "",
2025-04-03 09:57:39 (34760): Guest Log:  *** Listing of results directory ***
2025-04-03 09:57:39 (34760): Guest Log: total 329004
2025-04-03 09:57:39 (34760): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  2 04:18 pilot3.tar.gz
2025-04-03 09:57:39 (34760): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  2 05:04 runpilot2-wrapper.sh
2025-04-03 09:57:39 (34760): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  2 05:04 queuedata.json
2025-04-03 09:57:39 (34760): Guest Log: -rwxr-xr-x. 1 atlas atlas      9321 Apr  2 20:30 init_data.xml
2025-04-03 09:57:39 (34760): Guest Log: -rwxr-xr-x. 1 atlas atlas    507244 Apr  2 20:30 input.tar.gz
2025-04-03 09:57:39 (34760): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  2 20:30 start_atlas.sh
2025-04-03 09:57:39 (34760): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  2 20:30 EVNT.43634896._000009.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 09:57:39 (34760): Guest Log: -rw-r--r--. 1 atlas atlas      2592 Apr  2 20:30 pandaJob.out
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas       460 Apr  2 20:31 setup.sh.local
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas    991556 Apr  2 20:31 agis_schedconf.cvmfs.json
2025-04-03 09:57:39 (34760): Guest Log: drwx------. 4 atlas atlas      4096 Apr  2 20:31 pilot3
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas 321080320 Apr  3 07:56 HITS.43634898._011484.pool.root.1
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas        95 Apr  3 07:56 pilot_heartbeat.json
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas      1035 Apr  3 07:57 memory_monitor_summary.json
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas   1603449 Apr  3 07:57 agis_ddmendpoints.agis.ALL.json
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas    614395 Apr  3 07:57 log.43634898._011484.job.log.tgz.1
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas      7669 Apr  3 07:57 heartbeat.json
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas      4402 Apr  3 07:57 pilotlog.txt
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas   5413557 Apr  3 07:57 log.43634898._011484.job.log.1
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas       357 Apr  3 07:57 output.list
2025-04-03 09:57:39 (34760): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  3 07:57 runtime_log
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas   6041600 Apr  3 07:57 result.tar.gz
2025-04-03 09:57:39 (34760): Guest Log: -rw-r--r--. 1 atlas atlas     11175 Apr  3 07:57 runtime_log.err
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas       659 Apr  3 07:57 dCJLDmHS5J7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmO2ELDmGkpSsn.diag
2025-04-03 09:57:39 (34760): Guest Log: Looking for outputfile HITS.43634898._011484.pool.root.1
2025-04-03 09:57:39 (34760): Guest Log: HITS file was successfully produced
2025-04-03 09:57:39 (34760): Guest Log: -rw-------. 1 atlas atlas 321080320 Apr  3 07:56 /home/atlas/RunAtlas/HITS.43634898._011484.pool.root.1
2025-04-03 09:57:40 (34760): Guest Log: Successfully finished the ATLAS job!
2025-04-03 09:57:40 (34760): Guest Log: Copying the results back to the shared directory!
2025-04-03 09:57:40 (34760): Guest Log:  *** Contents of shared directory: ***
2025-04-03 09:57:40 (34760): Guest Log: total 672060
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root 360523930 Apr  2 20:30 ATLAS.root_0
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root 321080320 Apr  3  2025 HITS.pool.root.1
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root      9321 Apr  2 20:30 init_data.xml
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root    507244 Apr  2 20:29 input.tar.gz
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root   6041600 Apr  3  2025 result.tar.gz
2025-04-03 09:57:40 (34760): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  2 20:29 start_atlas.sh
2025-04-03 09:57:40 (34760): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 09:57:40 (34760): VM Completion File Detected.
2025-04-03 09:57:40 (34760): Powering off VM.
2025-04-03 09:57:41 (34760): Successfully stopped VM.
2025-04-03 09:57:41 (34760): Deregistering VM. (boinc_80b0e753284bb62e, slot#22)
2025-04-03 09:57:41 (34760): Removing network bandwidth throttle group from VM.
2025-04-03 09:57:41 (34760): Removing VM from VirtualBox.
09:57:46 (34760): called boinc_finish(0)

</stderr_txt>
]]>

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