Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-02 21:55:23 (9732): Detected: vboxwrapper 26206
2025-04-02 21:55:23 (9732): Detected: BOINC client v8.0.2
2025-04-02 21:55:25 (9732): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-02 21:55:25 (9732): Successfully copied 'init_data.xml' to the shared directory.
2025-04-02 21:55:26 (9732): Create VM. (boinc_ab542aa28a802199, slot#3)
2025-04-02 21:55:26 (9732): Setting Memory Size for VM. (4400MB)
2025-04-02 21:55:27 (9732): Setting CPU Count for VM. (4)
2025-04-02 21:55:27 (9732): Setting Chipset Options for VM.
2025-04-02 21:55:27 (9732): Setting Graphics Controller Options for VM.
2025-04-02 21:55:28 (9732): Setting Boot Options for VM.
2025-04-02 21:55:28 (9732): Setting Network Configuration for NAT.
2025-04-02 21:55:28 (9732): Enabling VM Network Access.
2025-04-02 21:55:28 (9732): Disabling USB Support for VM.
2025-04-02 21:55:29 (9732): Disabling COM Port Support for VM.
2025-04-02 21:55:29 (9732): Disabling LPT Port Support for VM.
2025-04-02 21:55:29 (9732): Disabling Audio Support for VM.
2025-04-02 21:55:30 (9732): Disabling Clipboard Support for VM.
2025-04-02 21:55:30 (9732): Disabling Drag and Drop Support for VM.
2025-04-02 21:55:30 (9732): Adding storage controller(s) to VM.
2025-04-02 21:55:30 (9732): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-02 21:55:33 (9732): Adding VirtualBox Guest Additions to VM.
2025-04-02 21:55:34 (9732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-02 21:55:34 (9732): forwarding host port 53460 to guest port 80
2025-04-02 21:55:34 (9732): Enabling remote desktop for VM.
2025-04-02 21:55:34 (9732): Required extension pack not installed, remote desktop not enabled.
2025-04-02 21:55:35 (9732): Enabling shared directory for VM.
2025-04-02 21:55:35 (9732): Starting VM using VBoxManage interface. (boinc_ab542aa28a802199, slot#3)
2025-04-02 21:55:45 (9732): Successfully started VM. (PID = '14384')
2025-04-02 21:55:45 (9732): Reporting VM Process ID to BOINC.
2025-04-02 21:55:45 (9732): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-02 21:55:45 (9732): Guest Log: CPUID EDX: 0x178bfbff
2025-04-02 21:55:45 (9732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-02 21:55:45 (9732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-02 21:55:45 (9732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-02 21:55:45 (9732): Detected: Web Application Enabled (http://localhost:53460)
2025-04-02 21:55:45 (9732): Preference change detected
2025-04-02 21:55:45 (9732): Setting CPU throttle for VM. (60%)
2025-04-02 21:55:45 (9732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-02 21:55:47 (9732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-02 21:55:47 (9732): Guest Log: BIOS: Booting from Hard Disk...
2025-04-02 21:55:51 (9732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-02 21:55:51 (9732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-02 21:55:51 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-02 21:56:00 (9732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-02 21:56:00 (9732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-02 21:56:12 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 21:56:32 (9732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000310 main     Log opened 2025-04-02T21:56:11.018256000Z
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000460 main     OS Product: Linux
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000511 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000553 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000597 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000598 main     Process ID: 1269
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.000599 main     Package type: LINUX_64BITS_GENERIC
2025-04-02 21:56:32 (9732): Guest Log: 00:00:00.001953 main     5.2.32 r132073 started. Verbose level = 0
2025-04-02 21:56:32 (9732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-02 21:56:32 (9732): Guest Log: [INFO] Mounting shared directory
2025-04-02 21:56:32 (9732): Guest Log: [INFO] Checking for init_data.xml
2025-04-02 21:56:32 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 21:56:38 (9732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-02 21:56:38 (9732): Guest Log: [INFO] Detected branch: prod
2025-04-02 21:56:38 (9732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-02 21:56:38 (9732): Guest Log: Copying input files
2025-04-02 21:56:42 (9732): Guest Log: 00:00:10.006518 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 169 186 651 000ns (GuestNow=1 743 623 801 836 879 000 ns GuestLast=1 743 630 971 023 530 000 ns fSetTimeLastLoop=true )
2025-04-02 21:56:42 (9732): Guest Log: Copied input files into RunAtlas.
2025-04-02 21:56:42 (9732): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-02 21:56:42 (9732): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-02 21:56:42 (9732): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-02 21:56:42 (9732): Guest Log: Further information can be found at the LHC@home message board.
2025-04-02 21:56:56 (9732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-02 21:56:56 (9732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-02 21:56:56 (9732): Guest Log: 2.6.3.0 1547 0 29948 144419 3 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-02 21:56:58 (9732): Guest Log: copied the webapp to /var/www
2025-04-02 21:56:58 (9732): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-02 21:56:58 (9732): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-02 21:56:59 (9732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-02 21:56:59 (9732): Guest Log:  *** Starting ATLAS job. (PandaID=6584888433 taskID=44004367) ***
2025-04-02 22:00:33 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:00:53 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:01:43 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:02:03 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:02:13 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:02:33 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:03:13 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:03:33 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:03:43 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:04:03 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:04:13 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:04:33 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:04:43 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:05:03 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:05:13 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:05:33 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:07:13 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:07:34 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:08:44 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:09:04 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:09:54 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:10:14 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:13:14 (9732): VM state change detected. (old = 'running', new = 'paused')
2025-04-02 22:13:34 (9732): VM state change detected. (old = 'paused', new = 'running')
2025-04-02 22:14:46 (9732): Guest Log:  *** Job finished ***
2025-04-02 22:14:46 (9732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:37,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:38,797 | INFO     | [job] queue monitor thread has finished
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:41,391 | INFO     | [data] queue_monitor thread has finished
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:41,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139691126032192)>', '<ExcThread(monitor, started 139690212566784)>']
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:42,003 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:42,003 | INFO     | [monitor] control thread has ended
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,503 | INFO     | all workflow threads have been joined
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,504 | INFO     | end of generic workflow (traces error code: 0)
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,504 | INFO     | traces error code: 0
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,746 [wrapper] ==== pilot stdout END ====
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,809 [wrapper] ==== wrapper stdout RESUME ====
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,818 [wrapper] pilotpid: 5883
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,828 [wrapper] Pilot exit status: 0
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:46,968 [wrapper] pandaids: 6584888433
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:47,059 [wrapper] cleanup supervisor_pilot  5889 5884
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:47,069 [wrapper] Test setup, not cleaning
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:47,079 [wrapper] apfmon messages muted
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:47,089 [wrapper] ==== wrapper stdout END ====
2025-04-02 22:14:46 (9732): Guest Log: 2025-04-02 20:10:47,100 [wrapper] ==== wrapper stderr END ====
2025-04-02 22:14:46 (9732): Guest Log:  *** Error codes and diagnostics ***
2025-04-02 22:14:46 (9732): Guest Log:     "exeErrorCode": 65,
2025-04-02 22:14:46 (9732): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5088.42 KB/s",
2025-04-02 22:14:46 (9732): Guest Log:     "pilotErrorCode": 1305,
2025-04-02 22:14:46 (9732): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5088.42 KB/s",
2025-04-02 22:14:46 (9732): Guest Log:  *** Listing of results directory ***
2025-04-02 22:14:46 (9732): Guest Log: total 4188
2025-04-02 22:14:46 (9732): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Apr  2 14:21 pilot3.tar.gz
2025-04-02 22:14:46 (9732): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Apr  2 14:35 queuedata.json
2025-04-02 22:14:46 (9732): Guest Log: -rwx------. 1 atlas atlas   37140 Apr  2 14:37 runpilot2-wrapper.sh
2025-04-02 22:14:46 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas    8719 Apr  2 19:56 init_data.xml
2025-04-02 22:14:46 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas  507241 Apr  2 19:56 input.tar.gz
2025-04-02 22:14:46 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas   17571 Apr  2 19:56 start_atlas.sh
2025-04-02 22:14:46 (9732): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  2 19:56 EVNT.44004365._000065.pool.root.1 -> /data/./ATLAS.root_0
2025-04-02 22:14:46 (9732): Guest Log: -rw-r--r--. 1 atlas atlas    2548 Apr  2 19:56 pandaJob.out
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas     424 Apr  2 19:57 setup.sh.local
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas  991556 Apr  2 19:59 agis_schedconf.cvmfs.json
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas 1603449 Apr  2 19:59 agis_ddmendpoints.agis.ALL.json
2025-04-02 22:14:46 (9732): Guest Log: drwx------. 4 atlas atlas    4096 Apr  2 19:59 pilot3
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas   52223 Apr  2 20:08 log.44004367._001613.job.log.tgz.1
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas      95 Apr  2 20:10 pilot_heartbeat.json
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas    8257 Apr  2 20:10 heartbeat.json
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas    4402 Apr  2 20:10 pilotlog.txt
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas  206854 Apr  2 20:10 log.44004367._001613.job.log.1
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas     188 Apr  2 20:10 output.list
2025-04-02 22:14:46 (9732): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr  2 20:10 runtime_log
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas  276480 Apr  2 20:10 result.tar.gz
2025-04-02 22:14:46 (9732): Guest Log: -rw-r--r--. 1 atlas atlas   10822 Apr  2 20:10 runtime_log.err
2025-04-02 22:14:46 (9732): Guest Log: -rw-------. 1 atlas atlas     656 Apr  2 20:10 iFtLDmgOEK7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmW9rKDmwmxtGm.diag
2025-04-02 22:14:46 (9732): Guest Log: Looking for outputfile HITS.44004367._001613.pool.root.1
2025-04-02 22:14:46 (9732): Guest Log: No HITS file was produced
2025-04-02 22:14:46 (9732): Guest Log: Successfully finished the ATLAS job!
2025-04-02 22:14:46 (9732): Guest Log: Copying the results back to the shared directory!
2025-04-02 22:14:46 (9732): Guest Log:  *** Contents of shared directory: ***
2025-04-02 22:14:46 (9732): Guest Log: total 220764
2025-04-02 22:14:46 (9732): Guest Log: -rwxrwxrwx. 1 root root 225241737 Apr  2 19:55 ATLAS.root_0
2025-04-02 22:14:46 (9732): Guest Log: -rwxrwxrwx. 1 root root      8719 Apr  2 19:55 init_data.xml
2025-04-02 22:14:46 (9732): Guest Log: -rwxrwxrwx. 1 root root    507241 Apr  2 19:20 input.tar.gz
2025-04-02 22:14:46 (9732): Guest Log: -rwxrwxrwx. 1 root root    276480 Apr  2  2025 result.tar.gz
2025-04-02 22:14:46 (9732): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  2 19:20 start_atlas.sh
2025-04-02 22:14:46 (9732): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-02 22:14:46 (9732): VM Completion File Detected.
2025-04-02 22:14:46 (9732): Powering off VM.
2025-04-02 22:14:47 (9732): Successfully stopped VM.
2025-04-02 22:14:47 (9732): Deregistering VM. (boinc_ab542aa28a802199, slot#3)
2025-04-02 22:14:47 (9732): Removing network bandwidth throttle group from VM.
2025-04-02 22:14:48 (9732): Removing VM from VirtualBox.
22:14:53 (9732): called boinc_finish(0)

</stderr_txt>
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