Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-02 23:59:41 (126484): Detected: vboxwrapper 26206
2025-04-02 23:59:41 (126484): Detected: BOINC client v8.0.2
2025-04-02 23:59:41 (126484): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-02 23:59:41 (126484): Successfully copied 'init_data.xml' to the shared directory.
2025-04-02 23:59:42 (126484): Create VM. (boinc_2325c63a8ef409e9, slot#3)
2025-04-02 23:59:42 (126484): Setting Memory Size for VM. (4400MB)
2025-04-02 23:59:43 (126484): Setting CPU Count for VM. (4)
2025-04-02 23:59:43 (126484): Setting Chipset Options for VM.
2025-04-02 23:59:43 (126484): Setting Graphics Controller Options for VM.
2025-04-02 23:59:43 (126484): Setting Boot Options for VM.
2025-04-02 23:59:44 (126484): Setting Network Configuration for NAT.
2025-04-02 23:59:44 (126484): Enabling VM Network Access.
2025-04-02 23:59:44 (126484): Disabling USB Support for VM.
2025-04-02 23:59:44 (126484): Disabling COM Port Support for VM.
2025-04-02 23:59:45 (126484): Disabling LPT Port Support for VM.
2025-04-02 23:59:45 (126484): Disabling Audio Support for VM.
2025-04-02 23:59:45 (126484): Disabling Clipboard Support for VM.
2025-04-02 23:59:45 (126484): Disabling Drag and Drop Support for VM.
2025-04-02 23:59:46 (126484): Adding storage controller(s) to VM.
2025-04-02 23:59:46 (126484): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-02 23:59:46 (126484): Adding VirtualBox Guest Additions to VM.
2025-04-02 23:59:47 (126484): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-02 23:59:47 (126484): forwarding host port 49443 to guest port 80
2025-04-02 23:59:47 (126484): Enabling remote desktop for VM.
2025-04-02 23:59:47 (126484): Required extension pack not installed, remote desktop not enabled.
2025-04-02 23:59:47 (126484): Enabling shared directory for VM.
2025-04-02 23:59:48 (126484): Starting VM using VBoxManage interface. (boinc_2325c63a8ef409e9, slot#3)
2025-04-02 23:59:52 (126484): Successfully started VM. (PID = '135320')
2025-04-02 23:59:52 (126484): Reporting VM Process ID to BOINC.
2025-04-02 23:59:52 (126484): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-02 23:59:52 (126484): Guest Log: CPUID EDX: 0x178bfbff
2025-04-02 23:59:52 (126484): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-02 23:59:52 (126484): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-02 23:59:52 (126484): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-02 23:59:52 (126484): Detected: Web Application Enabled (http://localhost:49443)
2025-04-02 23:59:52 (126484): Preference change detected
2025-04-02 23:59:52 (126484): Setting CPU throttle for VM. (100%)
2025-04-02 23:59:52 (126484): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-02 23:59:54 (126484): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-02 23:59:54 (126484): Guest Log: BIOS: Booting from Hard Disk...
2025-04-02 23:59:56 (126484): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-02 23:59:56 (126484): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-02 23:59:56 (126484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-03 00:00:01 (126484): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-03 00:00:01 (126484): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-03 00:00:04 (126484): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000082 main     Log opened 2025-04-03T00:00:02.654189000Z
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000141 main     OS Product: Linux
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000154 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000164 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000185 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000185 main     Process ID: 1309
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000185 main     Package type: LINUX_64BITS_GENERIC
2025-04-03 00:00:04 (126484): Guest Log: 00:00:00.000634 main     5.2.32 r132073 started. Verbose level = 0
2025-04-03 00:00:04 (126484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-03 00:00:04 (126484): Guest Log: [INFO] Mounting shared directory
2025-04-03 00:00:04 (126484): Guest Log: [INFO] Checking for init_data.xml
2025-04-03 00:00:06 (126484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-03 00:00:06 (126484): Guest Log: [INFO] Detected branch: prod
2025-04-03 00:00:07 (126484): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-03 00:00:07 (126484): Guest Log: Copying input files
2025-04-03 00:00:07 (126484): Guest Log: Copied input files into RunAtlas.
2025-04-03 00:00:07 (126484): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-03 00:00:07 (126484): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-03 00:00:07 (126484): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-03 00:00:07 (126484): Guest Log: Further information can be found at the LHC@home message board.
2025-04-03 00:00:13 (126484): Guest Log: 00:00:10.008068 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 921 459 000ns (GuestNow=1 743 627 613 734 345 000 ns GuestLast=1 743 638 402 655 804 000 ns fSetTimeLastLoop=true )
2025-04-03 00:00:15 (126484): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-03 00:00:15 (126484): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-03 00:00:15 (126484): Guest Log: 2.6.3.0 1585 0 32188 144420 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-03 00:00:15 (126484): Guest Log: copied the webapp to /var/www
2025-04-03 00:00:15 (126484): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-03 00:00:15 (126484): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-03 00:00:16 (126484): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-03 00:00:16 (126484): Guest Log:  *** Starting ATLAS job. (PandaID=6584053507 taskID=43634898) ***
2025-04-03 01:39:55 (126484): Status Report: Elapsed Time: '6000.000000'
2025-04-03 01:39:55 (126484): Status Report: CPU Time: '20352.265625'
2025-04-03 03:19:57 (126484): Status Report: Elapsed Time: '12000.000000'
2025-04-03 03:19:57 (126484): Status Report: CPU Time: '43967.218750'
2025-04-03 03:22:47 (126484): Guest Log:  *** Job finished ***
2025-04-03 03:22:47 (126484): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:13,890 | INFO     | [payload] control thread has finished
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:14,629 | INFO     | [data] copytool_out thread has finished
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:15,393 | INFO     | [data] queue_monitor thread has finished
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:15,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343774320448)>', '<ExcThread(monitor, started 140343324423936)>']
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:16,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:16,324 | INFO     | [monitor] control thread has ended
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,723 | INFO     | all workflow threads have been joined
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,723 | INFO     | end of generic workflow (traces error code: 0)
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,723 | INFO     | traces error code: 0
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,782 [wrapper] ==== pilot stdout END ====
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,784 [wrapper] ==== wrapper stdout RESUME ====
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,786 [wrapper] pilotpid: 5922
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,788 [wrapper] Pilot exit status: 0
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,839 [wrapper] pandaids: 6584053507
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,851 [wrapper] cleanup supervisor_pilot 12827 5923
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,853 [wrapper] Test setup, not cleaning
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,855 [wrapper] apfmon messages muted
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,857 [wrapper] ==== wrapper stdout END ====
2025-04-03 03:22:47 (126484): Guest Log: 2025-04-03 00:32:20,858 [wrapper] ==== wrapper stderr END ====
2025-04-03 03:22:47 (126484): Guest Log:  *** Error codes and diagnostics ***
2025-04-03 03:22:47 (126484): Guest Log:     "exeErrorCode": 0,
2025-04-03 03:22:47 (126484): Guest Log:     "exeErrorDiag": "",
2025-04-03 03:22:47 (126484): Guest Log:     "pilotErrorCode": 0,
2025-04-03 03:22:47 (126484): Guest Log:     "pilotErrorDiag": "",
2025-04-03 03:22:47 (126484): Guest Log:  *** Listing of results directory ***
2025-04-03 03:22:47 (126484): Guest Log: total 327364
2025-04-03 03:22:47 (126484): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  2 08:51 pilot3.tar.gz
2025-04-03 03:22:47 (126484): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  2 09:16 queuedata.json
2025-04-03 03:22:47 (126484): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  2 09:17 runpilot2-wrapper.sh
2025-04-03 03:22:47 (126484): Guest Log: -rwxr-xr-x. 1 atlas atlas     12147 Apr  2 21:00 init_data.xml
2025-04-03 03:22:47 (126484): Guest Log: -rwxr-xr-x. 1 atlas atlas    507250 Apr  2 21:00 input.tar.gz
2025-04-03 03:22:47 (126484): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  2 21:00 start_atlas.sh
2025-04-03 03:22:47 (126484): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  2 21:00 EVNT.43634896._000423.pool.root.1 -> /data/./ATLAS.root_0
2025-04-03 03:22:47 (126484): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Apr  2 21:00 pandaJob.out
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas       424 Apr  2 21:00 setup.sh.local
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas    991556 Apr  2 21:01 agis_schedconf.cvmfs.json
2025-04-03 03:22:47 (126484): Guest Log: drwx------. 4 atlas atlas      4096 Apr  2 21:01 pilot3
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas        95 Apr  3 00:31 pilot_heartbeat.json
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas 328578552 Apr  3 00:31 HITS.43634898._013253.pool.root.1
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas      1027 Apr  3 00:32 memory_monitor_summary.json
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas   1603449 Apr  3 00:32 agis_ddmendpoints.agis.ALL.json
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas    318898 Apr  3 00:32 log.43634898._013253.job.log.tgz.1
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas      7678 Apr  3 00:32 heartbeat.json
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas      4279 Apr  3 00:32 pilotlog.txt
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas   1116771 Apr  3 00:32 log.43634898._013253.job.log.1
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas       357 Apr  3 00:32 output.list
2025-04-03 03:22:47 (126484): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  3 00:32 runtime_log
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas   1454080 Apr  3 00:32 result.tar.gz
2025-04-03 03:22:47 (126484): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr  3 00:32 runtime_log.err
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas       661 Apr  3 00:32 AYMODmxO9J7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmLLFLDmhLFbYm.diag
2025-04-03 03:22:47 (126484): Guest Log: Looking for outputfile HITS.43634898._013253.pool.root.1
2025-04-03 03:22:47 (126484): Guest Log: HITS file was successfully produced
2025-04-03 03:22:47 (126484): Guest Log: -rw-------. 1 atlas atlas 328578552 Apr  3 00:31 /home/atlas/RunAtlas/HITS.43634898._013253.pool.root.1
2025-04-03 03:22:47 (126484): Guest Log: Successfully finished the ATLAS job!
2025-04-03 03:22:47 (126484): Guest Log: Copying the results back to the shared directory!
2025-04-03 03:22:47 (126484): Guest Log:  *** Contents of shared directory: ***
2025-04-03 03:22:47 (126484): Guest Log: total 671292
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root 356823413 Apr  2 20:59 ATLAS.root_0
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root 328578552 Apr  3 00:22 HITS.pool.root.1
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root     12147 Apr  2 20:59 init_data.xml
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root    507250 Apr  2 13:55 input.tar.gz
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root   1454080 Apr  3 00:22 result.tar.gz
2025-04-03 03:22:47 (126484): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  2 13:55 start_atlas.sh
2025-04-03 03:22:47 (126484): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-03 03:22:47 (126484): VM Completion File Detected.
2025-04-03 03:22:47 (126484): Powering off VM.
2025-04-03 03:22:48 (126484): Successfully stopped VM.
2025-04-03 03:22:48 (126484): Deregistering VM. (boinc_2325c63a8ef409e9, slot#3)
2025-04-03 03:22:48 (126484): Removing network bandwidth throttle group from VM.
2025-04-03 03:22:48 (126484): Removing VM from VirtualBox.
03:22:53 (126484): called boinc_finish(0)

</stderr_txt>
]]>

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