Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-02 03:08:17 (392): Detected: vboxwrapper 26206
2025-04-02 03:08:17 (392): Detected: BOINC client v7.16.20
2025-04-02 03:08:17 (392): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-02 03:08:17 (392): Successfully copied 'init_data.xml' to the shared directory.
2025-04-02 03:08:18 (392): Create VM. (boinc_20b558845dc089df, slot#7)
2025-04-02 03:08:18 (392): Setting Memory Size for VM. (4700MB)
2025-04-02 03:08:19 (392): Setting CPU Count for VM. (7)
2025-04-02 03:08:19 (392): Setting Chipset Options for VM.
2025-04-02 03:08:19 (392): Setting Graphics Controller Options for VM.
2025-04-02 03:08:19 (392): Setting Boot Options for VM.
2025-04-02 03:08:20 (392): Setting Network Configuration for NAT.
2025-04-02 03:08:20 (392): Enabling VM Network Access.
2025-04-02 03:08:20 (392): Disabling USB Support for VM.
2025-04-02 03:08:20 (392): Disabling COM Port Support for VM.
2025-04-02 03:08:21 (392): Disabling LPT Port Support for VM.
2025-04-02 03:08:21 (392): Disabling Audio Support for VM.
2025-04-02 03:08:21 (392): Disabling Clipboard Support for VM.
2025-04-02 03:08:21 (392): Disabling Drag and Drop Support for VM.
2025-04-02 03:08:22 (392): Adding storage controller(s) to VM.
2025-04-02 03:08:22 (392): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-02 03:08:22 (392): Adding VirtualBox Guest Additions to VM.
2025-04-02 03:08:23 (392): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-02 03:08:23 (392): forwarding host port 52840 to guest port 80
2025-04-02 03:08:23 (392): Enabling remote desktop for VM.
2025-04-02 03:08:23 (392): Required extension pack not installed, remote desktop not enabled.
2025-04-02 03:08:23 (392): Enabling shared directory for VM.
2025-04-02 03:08:24 (392): Starting VM using VBoxManage interface. (boinc_20b558845dc089df, slot#7)
2025-04-02 03:08:28 (392): Successfully started VM. (PID = '424')
2025-04-02 03:08:28 (392): Reporting VM Process ID to BOINC.
2025-04-02 03:08:28 (392): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-02 03:08:28 (392): Guest Log: CPUID EDX: 0x178bfbff
2025-04-02 03:08:28 (392): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-02 03:08:28 (392): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-02 03:08:28 (392): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-02 03:08:28 (392): Detected: Web Application Enabled (http://localhost:52840)
2025-04-02 03:08:28 (392): Preference change detected
2025-04-02 03:08:28 (392): Setting CPU throttle for VM. (100%)
2025-04-02 03:08:28 (392): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-02 03:08:30 (392): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-02 03:08:30 (392): Guest Log: BIOS: Booting from Hard Disk...
2025-04-02 03:08:33 (392): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-02 03:08:33 (392): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-02 03:08:33 (392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-02 03:08:38 (392): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-02 03:08:38 (392): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-02 03:08:43 (392): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000147 main     Log opened 2025-04-02T03:08:41.614178000Z
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000240 main     OS Product: Linux
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000270 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000294 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000323 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000324 main     Process ID: 1349
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000324 main     Package type: LINUX_64BITS_GENERIC
2025-04-02 03:08:43 (392): Guest Log: 00:00:00.000995 main     5.2.32 r132073 started. Verbose level = 0
2025-04-02 03:08:43 (392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-02 03:08:43 (392): Guest Log: [INFO] Mounting shared directory
2025-04-02 03:08:43 (392): Guest Log: [INFO] Checking for init_data.xml
2025-04-02 03:08:45 (392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-02 03:08:45 (392): Guest Log: [INFO] Detected branch: prod
2025-04-02 03:08:45 (392): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-02 03:08:45 (392): Guest Log: Copying input files
2025-04-02 03:08:46 (392): Guest Log: Copied input files into RunAtlas.
2025-04-02 03:08:47 (392): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-02 03:08:47 (392): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-02 03:08:47 (392): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-02 03:08:47 (392): Guest Log: Further information can be found at the LHC@home message board.
2025-04-02 03:08:53 (392): Guest Log: 00:00:10.041325 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 642 652 000ns (GuestNow=1 743 556 132 974 338 000 ns GuestLast=1 743 563 321 616 990 000 ns fSetTimeLastLoop=true )
2025-04-02 03:08:56 (392): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-02 03:08:57 (392): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-02 03:08:57 (392): Guest Log: 2.6.3.0 1625 0 30192 144387 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-02 03:08:58 (392): Guest Log: copied the webapp to /var/www
2025-04-02 03:08:58 (392): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-02 03:08:58 (392): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-02 03:08:58 (392): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-02 03:08:58 (392): Guest Log:  *** Starting ATLAS job. (PandaID=6582477072 taskID=43634898) ***
2025-04-02 04:48:37 (392): Status Report: Elapsed Time: '6000.000000'
2025-04-02 04:48:37 (392): Status Report: CPU Time: '35800.531250'
2025-04-02 05:30:48 (392): Guest Log:  *** Job finished ***
2025-04-02 05:30:48 (392): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:32,786 | INFO     | [job] control thread has finished
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:33,124 | INFO     | [data] copytool_out thread has finished
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:34,965 | INFO     | [data] queue_monitor thread has finished
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:37,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538190198592)>', '<ExcThread(monitor, started 140537596192512)>']
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:37,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:37,116 | INFO     | [monitor] control thread has ended
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,025 | INFO     | all workflow threads have been joined
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,025 | INFO     | end of generic workflow (traces error code: 0)
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,025 | INFO     | traces error code: 0
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,116 [wrapper] ==== pilot stdout END ====
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,121 [wrapper] ==== wrapper stdout RESUME ====
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,126 [wrapper] pilotpid: 5978
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,131 [wrapper] Pilot exit status: 0
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,202 [wrapper] pandaids: 6582477072
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,233 [wrapper] cleanup supervisor_pilot  7281 5979
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,237 [wrapper] Test setup, not cleaning
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,242 [wrapper] apfmon messages muted
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,247 [wrapper] ==== wrapper stdout END ====
2025-04-02 05:30:48 (392): Guest Log: 2025-04-02 03:30:42,252 [wrapper] ==== wrapper stderr END ====
2025-04-02 05:30:48 (392): Guest Log:  *** Error codes and diagnostics ***
2025-04-02 05:30:48 (392): Guest Log:     "exeErrorCode": 0,
2025-04-02 05:30:48 (392): Guest Log:     "exeErrorDiag": "",
2025-04-02 05:30:48 (392): Guest Log:     "pilotErrorCode": 0,
2025-04-02 05:30:48 (392): Guest Log:     "pilotErrorDiag": "",
2025-04-02 05:30:48 (392): Guest Log:  *** Listing of results directory ***
2025-04-02 05:30:48 (392): Guest Log: total 320740
2025-04-02 05:30:48 (392): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  1 13:38 pilot3.tar.gz
2025-04-02 05:30:48 (392): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  1 13:52 queuedata.json
2025-04-02 05:30:48 (392): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  1 13:53 runpilot2-wrapper.sh
2025-04-02 05:30:48 (392): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  2 01:08 start_atlas.sh
2025-04-02 05:30:48 (392): Guest Log: -rwxr-xr-x. 1 atlas atlas    507252 Apr  2 01:08 input.tar.gz
2025-04-02 05:30:48 (392): Guest Log: -rwxr-xr-x. 1 atlas atlas      8817 Apr  2 01:08 init_data.xml
2025-04-02 05:30:48 (392): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  2 01:08 EVNT.43634896._000501.pool.root.1 -> /data/./ATLAS.root_0
2025-04-02 05:30:48 (392): Guest Log: -rw-r--r--. 1 atlas atlas      2596 Apr  2 01:08 pandaJob.out
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas       424 Apr  2 01:09 setup.sh.local
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas    989902 Apr  2 01:09 agis_schedconf.cvmfs.json
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas   1599134 Apr  2 01:09 agis_ddmendpoints.agis.ALL.json
2025-04-02 05:30:48 (392): Guest Log: drwx------. 4 atlas atlas      4096 Apr  2 01:09 pilot3
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas 322618328 Apr  2 03:29 HITS.43634898._005208.pool.root.1
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas        95 Apr  2 03:29 pilot_heartbeat.json
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas      1026 Apr  2 03:30 memory_monitor_summary.json
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas    311636 Apr  2 03:30 log.43634898._005208.job.log.tgz.1
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas      7718 Apr  2 03:30 heartbeat.json
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas      4279 Apr  2 03:30 pilotlog.txt
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas    714085 Apr  2 03:30 log.43634898._005208.job.log.1
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas       357 Apr  2 03:30 output.list
2025-04-02 05:30:48 (392): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  2 03:30 runtime_log
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas   1044480 Apr  2 03:30 result.tar.gz
2025-04-02 05:30:48 (392): Guest Log: -rw-r--r--. 1 atlas atlas     10936 Apr  2 03:30 runtime_log.err
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas       654 Apr  2 03:30 ijQMDmDErJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm3tDLDmJWo2Xm.diag
2025-04-02 05:30:48 (392): Guest Log: Looking for outputfile HITS.43634898._005208.pool.root.1
2025-04-02 05:30:48 (392): Guest Log: HITS file was successfully produced
2025-04-02 05:30:48 (392): Guest Log: -rw-------. 1 atlas atlas 322618328 Apr  2 03:29 /home/atlas/RunAtlas/HITS.43634898._005208.pool.root.1
2025-04-02 05:30:49 (392): Guest Log: Successfully finished the ATLAS job!
2025-04-02 05:30:49 (392): Guest Log: Copying the results back to the shared directory!
2025-04-02 05:30:50 (392): Guest Log:  *** Contents of shared directory: ***
2025-04-02 05:30:50 (392): Guest Log: total 668756
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root 360596499 Apr  2 01:08 ATLAS.root_0
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root 322618328 Apr  2  2025 HITS.pool.root.1
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root      8817 Apr  2 01:08 init_data.xml
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root    507252 Apr  1 23:02 input.tar.gz
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root   1044480 Apr  2  2025 result.tar.gz
2025-04-02 05:30:50 (392): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 23:02 start_atlas.sh
2025-04-02 05:30:50 (392): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-02 05:30:50 (392): VM Completion File Detected.
2025-04-02 05:30:50 (392): Powering off VM.
2025-04-02 05:30:51 (392): Successfully stopped VM.
2025-04-02 05:30:51 (392): Deregistering VM. (boinc_20b558845dc089df, slot#7)
2025-04-02 05:30:51 (392): Removing network bandwidth throttle group from VM.
2025-04-02 05:30:51 (392): Removing VM from VirtualBox.
05:30:56 (392): called boinc_finish(0)

</stderr_txt>
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