Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-01 15:49:42 (17612): Detected: vboxwrapper 26206
2025-04-01 15:49:42 (17612): Detected: BOINC client v8.0.4
2025-04-01 15:49:42 (17612): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-01 15:49:42 (17612): Successfully copied 'init_data.xml' to the shared directory.
2025-04-01 15:49:43 (17612): Create VM. (boinc_7cedf3ff23223c98, slot#3)
2025-04-01 15:49:43 (17612): Setting Memory Size for VM. (4400MB)
2025-04-01 15:49:44 (17612): Setting CPU Count for VM. (4)
2025-04-01 15:49:44 (17612): Setting Chipset Options for VM.
2025-04-01 15:49:44 (17612): Setting Graphics Controller Options for VM.
2025-04-01 15:49:44 (17612): Setting Boot Options for VM.
2025-04-01 15:49:45 (17612): Setting Network Configuration for NAT.
2025-04-01 15:49:45 (17612): Enabling VM Network Access.
2025-04-01 15:49:45 (17612): Disabling USB Support for VM.
2025-04-01 15:49:46 (17612): Disabling COM Port Support for VM.
2025-04-01 15:49:46 (17612): Disabling LPT Port Support for VM.
2025-04-01 15:49:46 (17612): Disabling Audio Support for VM.
2025-04-01 15:49:47 (17612): Disabling Clipboard Support for VM.
2025-04-01 15:49:47 (17612): Disabling Drag and Drop Support for VM.
2025-04-01 15:49:47 (17612): Adding storage controller(s) to VM.
2025-04-01 15:49:48 (17612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-01 15:49:49 (17612): Adding VirtualBox Guest Additions to VM.
2025-04-01 15:49:49 (17612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-01 15:49:49 (17612): forwarding host port 61331 to guest port 80
2025-04-01 15:49:49 (17612): Enabling remote desktop for VM.
2025-04-01 15:49:50 (17612): Required extension pack not installed, remote desktop not enabled.
2025-04-01 15:49:50 (17612): Enabling shared directory for VM.
2025-04-01 15:49:50 (17612): Starting VM using VBoxManage interface. (boinc_7cedf3ff23223c98, slot#3)
2025-04-01 15:49:56 (17612): Successfully started VM. (PID = '9136')
2025-04-01 15:49:56 (17612): Reporting VM Process ID to BOINC.
2025-04-01 15:49:56 (17612): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-01 15:49:56 (17612): Guest Log: CPUID EDX: 0x178bfbff
2025-04-01 15:49:56 (17612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-01 15:49:56 (17612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-01 15:49:56 (17612): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-01 15:49:56 (17612): Detected: Web Application Enabled (http://localhost:61331)
2025-04-01 15:49:56 (17612): Preference change detected
2025-04-01 15:49:56 (17612): Setting CPU throttle for VM. (80%)
2025-04-01 15:49:56 (17612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-01 15:49:58 (17612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-01 15:49:58 (17612): Guest Log: BIOS: Booting from Hard Disk...
2025-04-01 15:50:01 (17612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-01 15:50:01 (17612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-01 15:50:01 (17612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-01 15:50:05 (17612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-01 15:50:05 (17612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-01 15:50:12 (17612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000154 main     Log opened 2025-04-01T15:50:10.469578000Z
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000262 main     OS Product: Linux
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000303 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000338 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000403 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000405 main     Process ID: 1309
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.000405 main     Package type: LINUX_64BITS_GENERIC
2025-04-01 15:50:12 (17612): Guest Log: 00:00:00.001283 main     5.2.32 r132073 started. Verbose level = 0
2025-04-01 15:50:12 (17612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-01 15:50:12 (17612): Guest Log: [INFO] Mounting shared directory
2025-04-01 15:50:12 (17612): Guest Log: [INFO] Checking for init_data.xml
2025-04-01 15:50:16 (17612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-01 15:50:16 (17612): Guest Log: [INFO] Detected branch: prod
2025-04-01 15:50:16 (17612): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-01 15:50:16 (17612): Guest Log: Copying input files
2025-04-01 15:50:18 (17612): Guest Log: Copied input files into RunAtlas.
2025-04-01 15:50:18 (17612): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-01 15:50:18 (17612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-01 15:50:18 (17612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-01 15:50:18 (17612): Guest Log: Further information can be found at the LHC@home message board.
2025-04-01 15:50:22 (17612): Guest Log: 00:00:10.003469 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 934 380 000ns (GuestNow=1 743 537 021 406 616 000 ns GuestLast=1 743 522 610 472 236 000 ns fSetTimeLastLoop=true )
2025-04-01 15:50:25 (17612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-01 15:50:26 (17612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-01 15:50:26 (17612): Guest Log: 2.6.3.0 1589 0 32164 144379 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-01 15:50:26 (17612): Guest Log: copied the webapp to /var/www
2025-04-01 15:50:27 (17612): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-01 15:50:27 (17612): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-01 15:50:27 (17612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-01 15:50:27 (17612): Guest Log:  *** Starting ATLAS job. (PandaID=6581297919 taskID=43634882) ***
2025-04-01 17:30:01 (17612): Status Report: Elapsed Time: '6000.000000'
2025-04-01 17:30:01 (17612): Status Report: CPU Time: '17480.187500'
2025-04-01 19:10:06 (17612): Status Report: Elapsed Time: '12000.000000'
2025-04-01 19:10:06 (17612): Status Report: CPU Time: '38672.171875'
2025-04-01 20:50:11 (17612): Status Report: Elapsed Time: '18000.000000'
2025-04-01 20:50:11 (17612): Status Report: CPU Time: '60043.921875'
2025-04-01 21:01:57 (17612): Guest Log:  *** Job finished ***
2025-04-01 21:01:57 (17612): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:46,169 | INFO     | [data] copytool_out thread has finished
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:46,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:51,002 | INFO     | [data] queue_monitor thread has finished
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:51,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139847574050624)>', '<ExcThread(monitor, started 139847012443904)>']
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:51,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:51,635 | INFO     | [monitor] control thread has ended
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,204 | INFO     | all workflow threads have been joined
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,204 | INFO     | end of generic workflow (traces error code: 0)
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,205 | INFO     | traces error code: 0
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,281 [wrapper] ==== pilot stdout END ====
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,285 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,290 [wrapper] pilotpid: 5913
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,294 [wrapper] Pilot exit status: 0
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,368 [wrapper] pandaids: 6581297919
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,397 [wrapper] cleanup supervisor_pilot 21929 5914
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,402 [wrapper] Test setup, not cleaning
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,407 [wrapper] apfmon messages muted
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,411 [wrapper] ==== wrapper stdout END ====
2025-04-01 21:01:57 (17612): Guest Log: 2025-04-02 01:01:56,415 [wrapper] ==== wrapper stderr END ====
2025-04-01 21:01:57 (17612): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 21:01:57 (17612): Guest Log:     "exeErrorCode": 0,
2025-04-01 21:01:57 (17612): Guest Log:     "exeErrorDiag": "",
2025-04-01 21:01:57 (17612): Guest Log:     "pilotErrorCode": 0,
2025-04-01 21:01:57 (17612): Guest Log:     "pilotErrorDiag": "",
2025-04-01 21:01:57 (17612): Guest Log:  *** Listing of results directory ***
2025-04-01 21:01:57 (17612): Guest Log: total 299928
2025-04-01 21:01:57 (17612): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 31 15:42 pilot3.tar.gz
2025-04-01 21:01:57 (17612): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 31 16:04 queuedata.json
2025-04-01 21:01:57 (17612): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 31 16:04 runpilot2-wrapper.sh
2025-04-01 21:01:57 (17612): Guest Log: -rwxr-xr-x. 1 atlas atlas      9192 Apr  1 19:50 init_data.xml
2025-04-01 21:01:57 (17612): Guest Log: -rwxr-xr-x. 1 atlas atlas    507267 Apr  1 19:50 input.tar.gz
2025-04-01 21:01:57 (17612): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  1 19:50 start_atlas.sh
2025-04-01 21:01:57 (17612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  1 19:50 EVNT.43634880._000814.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 21:01:57 (17612): Guest Log: -rw-r--r--. 1 atlas atlas      2617 Apr  1 19:50 pandaJob.out
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas       424 Apr  1 19:50 setup.sh.local
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas    989894 Apr  1 19:51 agis_schedconf.cvmfs.json
2025-04-01 21:01:57 (17612): Guest Log: drwx------. 4 atlas atlas      4096 Apr  1 19:51 pilot3
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas        95 Apr  2 01:00 pilot_heartbeat.json
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas 299352448 Apr  2 01:00 HITS.43634882._008432.pool.root.1
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas      1034 Apr  2 01:01 memory_monitor_summary.json
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas   1599134 Apr  2 01:01 agis_ddmendpoints.agis.ALL.json
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas    381351 Apr  2 01:01 log.43634882._008432.job.log.tgz.1
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas      7694 Apr  2 01:01 heartbeat.json
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas      4402 Apr  2 01:01 pilotlog.txt
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas   1618629 Apr  2 01:01 log.43634882._008432.job.log.1
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas       357 Apr  2 01:01 output.list
2025-04-01 21:01:57 (17612): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  2 01:01 runtime_log
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas   2017280 Apr  2 01:01 result.tar.gz
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas       648 Apr  2 01:01 Xt1MDmKoWJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmzBCLDmUVvepn.diag
2025-04-01 21:01:57 (17612): Guest Log: -rw-r--r--. 1 atlas atlas     10900 Apr  2 01:01 runtime_log.err
2025-04-01 21:01:57 (17612): Guest Log: Looking for outputfile HITS.43634882._008432.pool.root.1
2025-04-01 21:01:57 (17612): Guest Log: HITS file was successfully produced
2025-04-01 21:01:57 (17612): Guest Log: -rw-------. 1 atlas atlas 299352448 Apr  2 01:00 /home/atlas/RunAtlas/HITS.43634882._008432.pool.root.1
2025-04-01 21:01:59 (17612): Guest Log: Successfully finished the ATLAS job!
2025-04-01 21:01:59 (17612): Guest Log: Copying the results back to the shared directory!
2025-04-01 21:01:59 (17612): Guest Log:  *** Contents of shared directory: ***
2025-04-01 21:01:59 (17612): Guest Log: total 634656
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root 347970064 Apr  1 19:49 ATLAS.root_0
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root 299352448 Apr  2 01:01 HITS.pool.root.1
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root      9192 Apr  1 19:49 init_data.xml
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root    507267 Apr  1 19:48 input.tar.gz
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root   2017280 Apr  2 01:01 result.tar.gz
2025-04-01 21:01:59 (17612): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 19:48 start_atlas.sh
2025-04-01 21:01:59 (17612): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 21:01:59 (17612): VM Completion File Detected.
2025-04-01 21:01:59 (17612): Powering off VM.
2025-04-01 21:02:00 (17612): Successfully stopped VM.
2025-04-01 21:02:00 (17612): Deregistering VM. (boinc_7cedf3ff23223c98, slot#3)
2025-04-01 21:02:00 (17612): Removing network bandwidth throttle group from VM.
2025-04-01 21:02:00 (17612): Removing VM from VirtualBox.
21:02:05 (17612): called boinc_finish(0)

</stderr_txt>
]]>

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