Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-01 12:21:31 (4776): Detected: vboxwrapper 26206
2025-04-01 12:21:31 (4776): Detected: BOINC client v8.0.2
2025-04-01 12:21:31 (4776): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-01 12:21:31 (4776): Successfully copied 'init_data.xml' to the shared directory.
2025-04-01 12:21:32 (4776): Create VM. (boinc_0ac697812e50f2d2, slot#1)
2025-04-01 12:21:33 (4776): Setting Memory Size for VM. (4200MB)
2025-04-01 12:21:33 (4776): Setting CPU Count for VM. (2)
2025-04-01 12:21:33 (4776): Setting Chipset Options for VM.
2025-04-01 12:21:33 (4776): Setting Graphics Controller Options for VM.
2025-04-01 12:21:34 (4776): Setting Boot Options for VM.
2025-04-01 12:21:34 (4776): Setting Network Configuration for NAT.
2025-04-01 12:21:34 (4776): Enabling VM Network Access.
2025-04-01 12:21:34 (4776): Disabling USB Support for VM.
2025-04-01 12:21:35 (4776): Disabling COM Port Support for VM.
2025-04-01 12:21:35 (4776): Disabling LPT Port Support for VM.
2025-04-01 12:21:35 (4776): Disabling Audio Support for VM.
2025-04-01 12:21:35 (4776): Disabling Clipboard Support for VM.
2025-04-01 12:21:36 (4776): Disabling Drag and Drop Support for VM.
2025-04-01 12:21:36 (4776): Adding storage controller(s) to VM.
2025-04-01 12:21:36 (4776): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-01 12:21:37 (4776): Adding VirtualBox Guest Additions to VM.
2025-04-01 12:21:37 (4776): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-01 12:21:37 (4776): forwarding host port 51385 to guest port 80
2025-04-01 12:21:37 (4776): Enabling remote desktop for VM.
2025-04-01 12:21:38 (4776): Required extension pack not installed, remote desktop not enabled.
2025-04-01 12:21:38 (4776): Enabling shared directory for VM.
2025-04-01 12:21:38 (4776): Starting VM using VBoxManage interface. (boinc_0ac697812e50f2d2, slot#1)
2025-04-01 12:21:44 (4776): Successfully started VM. (PID = '23912')
2025-04-01 12:21:44 (4776): Reporting VM Process ID to BOINC.
2025-04-01 12:21:44 (4776): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-01 12:21:44 (4776): Guest Log: CPUID EDX: 0x178bfbff
2025-04-01 12:21:44 (4776): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-01 12:21:44 (4776): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-01 12:21:44 (4776): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-01 12:21:44 (4776): Detected: Web Application Enabled (http://localhost:51385)
2025-04-01 12:21:44 (4776): Preference change detected
2025-04-01 12:21:44 (4776): Setting CPU throttle for VM. (100%)
2025-04-01 12:21:44 (4776): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-01 12:21:46 (4776): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-01 12:21:46 (4776): Guest Log: BIOS: Booting from Hard Disk...
2025-04-01 12:21:49 (4776): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-01 12:21:49 (4776): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-01 12:21:49 (4776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-01 12:21:55 (4776): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-01 12:21:55 (4776): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-01 12:22:05 (4776): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000182 main     Log opened 2025-04-01T12:22:04.006270000Z
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000311 main     OS Product: Linux
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000342 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000364 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000414 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000415 main     Process ID: 1276
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.000416 main     Package type: LINUX_64BITS_GENERIC
2025-04-01 12:22:05 (4776): Guest Log: 00:00:00.001213 main     5.2.32 r132073 started. Verbose level = 0
2025-04-01 12:22:05 (4776): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-01 12:22:05 (4776): Guest Log: [INFO] Mounting shared directory
2025-04-01 12:22:05 (4776): Guest Log: [INFO] Checking for init_data.xml
2025-04-01 12:22:10 (4776): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-01 12:22:10 (4776): Guest Log: [INFO] Detected branch: prod
2025-04-01 12:22:10 (4776): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-01 12:22:10 (4776): Guest Log: Copying input files
2025-04-01 12:22:12 (4776): Guest Log: Copied input files into RunAtlas.
2025-04-01 12:22:12 (4776): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-01 12:22:12 (4776): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-01 12:22:12 (4776): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-01 12:22:12 (4776): Guest Log: Further information can be found at the LHC@home message board.
2025-04-01 12:22:15 (4776): Guest Log: 00:00:10.005478 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 348 687 000ns (GuestNow=1 743 524 535 359 606 000 ns GuestLast=1 743 510 124 010 919 000 ns fSetTimeLastLoop=true )
2025-04-01 12:22:22 (4776): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-01 12:22:22 (4776): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-01 12:22:22 (4776): Guest Log: 2.6.3.0 1553 0 32188 144375 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-01 12:22:23 (4776): Guest Log: copied the webapp to /var/www
2025-04-01 12:22:23 (4776): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-01 12:22:23 (4776): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-01 12:22:24 (4776): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-01 12:22:24 (4776): Guest Log:  *** Starting ATLAS job. (PandaID=6581273382 taskID=43634882) ***
2025-04-01 12:50:40 (4776): Guest Log:  *** Job finished ***
2025-04-01 12:50:40 (4776): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:20,941 | INFO     | proceeding with server update
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:20,941 | WARNING  | queue monitor detected a set abort_job (due to a kill signal)
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:20,941 | INFO     | preparing for final server update for job 6581273382 in state='failed'
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:20,941 | INFO     | 141 s passed since kill signal was intercepted - make sure that stage-out has finished
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:20,941 | WARNING  | reset time_since_kill to 60 since value is out of allowed limits
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,632 [wrapper] The pilot process (5858) is still running after 3m. Sending SIGKILL (9).
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,635 [wrapper] The pilot process (5858) is still running after 3m. Sending SIGKILL (9).
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,645 [wrapper] ==== pilot stdout END ====
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,648 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,650 [wrapper] pilotpid: 5858
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:46:59,653 [wrapper] Pilot exit status: 137
2025-04-01 12:50:40 (4776): Guest Log: ./runpilot2-wrapper.sh: line 1045: /usr/bin/xargs: Input/output error
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,740 [wrapper] pandaids: 
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,743 [wrapper] Found: wrapper_sigkill_5858, so killed by wrapper
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,745 [wrapper] apfmon messages muted
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,765 [wrapper] No supervise_pilot CHILD process found
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,768 [wrapper] Test setup, not cleaning
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,771 [wrapper] apfmon messages muted
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,773 [wrapper] ==== wrapper stdout END ====
2025-04-01 12:50:40 (4776): Guest Log: 2025-04-01 16:50:39,775 [wrapper] ==== wrapper stderr END ====
2025-04-01 12:50:40 (4776): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 12:50:40 (4776): Guest Log:  *** Listing of results directory ***
2025-04-01 12:50:40 (4776): Guest Log: total 4056
2025-04-01 12:50:40 (4776): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Mar 31 15:26 pilot3.tar.gz
2025-04-01 12:50:40 (4776): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Mar 31 15:34 queuedata.json
2025-04-01 12:50:40 (4776): Guest Log: -rwx------. 1 atlas atlas   37140 Mar 31 15:35 runpilot2-wrapper.sh
2025-04-01 12:50:40 (4776): Guest Log: -rwxr-xr-x. 1 atlas atlas    9261 Apr  1 16:22 init_data.xml
2025-04-01 12:50:40 (4776): Guest Log: -rwxr-xr-x. 1 atlas atlas  507260 Apr  1 16:22 input.tar.gz
2025-04-01 12:50:40 (4776): Guest Log: -rwxr-xr-x. 1 atlas atlas   17571 Apr  1 16:22 start_atlas.sh
2025-04-01 12:50:40 (4776): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  1 16:22 EVNT.43634880._000794.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 12:50:40 (4776): Guest Log: -rw-r--r--. 1 atlas atlas    2617 Apr  1 16:22 pandaJob.out
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas     424 Apr  1 16:22 setup.sh.local
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas  989894 Apr  1 16:24 agis_schedconf.cvmfs.json
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas 1599134 Apr  1 16:24 agis_ddmendpoints.agis.ALL.json
2025-04-01 12:50:40 (4776): Guest Log: drwx------. 4 atlas atlas    4096 Apr  1 16:24 pilot3
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas     568 Apr  1 16:27 heartbeat.json
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas      95 Apr  1 16:43 pilot_heartbeat.json
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas       0 Apr  1 16:43 wrapper_sigint_5858
2025-04-01 12:50:40 (4776): Guest Log: drwxrwx---. 2 atlas atlas     283 Apr  1 16:44 PanDA_Pilot-6581273382
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas     991 Apr  1 16:44 memory_monitor_summary.json
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas  128313 Apr  1 16:46 pilotlog.txt
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas       0 Apr  1 16:46 wrapper_sigkill_5858
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas  140916 Apr  1 16:50 log.43634882._007919.job.log.1
2025-04-01 12:50:40 (4776): Guest Log: -rw-r--r--. 1 atlas atlas     571 Apr  1 16:50 runtime_log
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas  153600 Apr  1 16:50 result.tar.gz
2025-04-01 12:50:40 (4776): Guest Log: -rw-------. 1 atlas atlas     644 Apr  1 16:50 yJlLDm7LWJ7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmuBqKDmikqmom.diag
2025-04-01 12:50:40 (4776): Guest Log: -rw-r--r--. 1 atlas atlas   10275 Apr  1 16:50 runtime_log.err
2025-04-01 12:50:40 (4776): Guest Log: Looking for outputfile HITS.43634882._007919.pool.root.1
2025-04-01 12:50:40 (4776): Guest Log: No HITS file was produced
2025-04-01 12:50:40 (4776): Guest Log: Successfully finished the ATLAS job!
2025-04-01 12:50:40 (4776): Guest Log: Copying the results back to the shared directory!
2025-04-01 12:50:40 (4776): Guest Log:  *** Contents of shared directory: ***
2025-04-01 12:50:40 (4776): Guest Log: total 334864
2025-04-01 12:50:40 (4776): Guest Log: -rwxrwxrwx. 1 root root 342200432 Apr  1 16:21 ATLAS.root_0
2025-04-01 12:50:40 (4776): Guest Log: -rwxrwxrwx. 1 root root      9261 Apr  1 16:21 init_data.xml
2025-04-01 12:50:40 (4776): Guest Log: -rwxrwxrwx. 1 root root    507260 Apr  1 16:21 input.tar.gz
2025-04-01 12:50:40 (4776): Guest Log: -rwxrwxrwx. 1 root root    153600 Apr  1 16:50 result.tar.gz
2025-04-01 12:50:40 (4776): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 16:21 start_atlas.sh
2025-04-01 12:50:40 (4776): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 12:50:40 (4776): VM Completion File Detected.
2025-04-01 12:50:40 (4776): Powering off VM.
2025-04-01 12:50:40 (4776): Successfully stopped VM.
2025-04-01 12:50:40 (4776): Deregistering VM. (boinc_0ac697812e50f2d2, slot#1)
2025-04-01 12:50:40 (4776): Removing network bandwidth throttle group from VM.
2025-04-01 12:50:41 (4776): Removing VM from VirtualBox.
12:50:46 (4776): called boinc_finish(0)

</stderr_txt>
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