Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-01 12:21:02 (23536): Detected: vboxwrapper 26206
2025-04-01 12:21:02 (23536): Detected: BOINC client v8.0.2
2025-04-01 12:21:02 (23536): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-01 12:21:03 (23536): Successfully copied 'init_data.xml' to the shared directory.
2025-04-01 12:21:03 (23536): Create VM. (boinc_d706badb098b235f, slot#0)
2025-04-01 12:21:04 (23536): Setting Memory Size for VM. (4200MB)
2025-04-01 12:21:04 (23536): Setting CPU Count for VM. (2)
2025-04-01 12:21:04 (23536): Setting Chipset Options for VM.
2025-04-01 12:21:05 (23536): Setting Graphics Controller Options for VM.
2025-04-01 12:21:05 (23536): Setting Boot Options for VM.
2025-04-01 12:21:05 (23536): Setting Network Configuration for NAT.
2025-04-01 12:21:05 (23536): Enabling VM Network Access.
2025-04-01 12:21:06 (23536): Disabling USB Support for VM.
2025-04-01 12:21:06 (23536): Disabling COM Port Support for VM.
2025-04-01 12:21:06 (23536): Disabling LPT Port Support for VM.
2025-04-01 12:21:06 (23536): Disabling Audio Support for VM.
2025-04-01 12:21:07 (23536): Disabling Clipboard Support for VM.
2025-04-01 12:21:07 (23536): Disabling Drag and Drop Support for VM.
2025-04-01 12:21:07 (23536): Adding storage controller(s) to VM.
2025-04-01 12:21:08 (23536): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-01 12:21:10 (23536): Adding VirtualBox Guest Additions to VM.
2025-04-01 12:21:11 (23536): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-01 12:21:11 (23536): forwarding host port 51376 to guest port 80
2025-04-01 12:21:11 (23536): Enabling remote desktop for VM.
2025-04-01 12:21:11 (23536): Required extension pack not installed, remote desktop not enabled.
2025-04-01 12:21:11 (23536): Enabling shared directory for VM.
2025-04-01 12:21:12 (23536): Starting VM using VBoxManage interface. (boinc_d706badb098b235f, slot#0)
2025-04-01 12:21:18 (23536): Successfully started VM. (PID = '16572')
2025-04-01 12:21:18 (23536): Reporting VM Process ID to BOINC.
2025-04-01 12:21:18 (23536): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-01 12:21:18 (23536): Guest Log: CPUID EDX: 0x178bfbff
2025-04-01 12:21:18 (23536): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-01 12:21:18 (23536): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-01 12:21:18 (23536): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-01 12:21:18 (23536): Detected: Web Application Enabled (http://localhost:51376)
2025-04-01 12:21:18 (23536): Preference change detected
2025-04-01 12:21:18 (23536): Setting CPU throttle for VM. (100%)
2025-04-01 12:21:18 (23536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-01 12:21:20 (23536): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-01 12:21:20 (23536): Guest Log: BIOS: Booting from Hard Disk...
2025-04-01 12:21:23 (23536): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-01 12:21:23 (23536): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-01 12:21:23 (23536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-01 12:21:27 (23536): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-01 12:21:27 (23536): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-01 12:21:33 (23536): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000151 main     Log opened 2025-04-01T12:21:31.897997000Z
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000222 main     OS Product: Linux
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000283 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000340 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000341 main     Process ID: 1264
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.000341 main     Package type: LINUX_64BITS_GENERIC
2025-04-01 12:21:33 (23536): Guest Log: 00:00:00.001143 main     5.2.32 r132073 started. Verbose level = 0
2025-04-01 12:21:33 (23536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-01 12:21:33 (23536): Guest Log: [INFO] Mounting shared directory
2025-04-01 12:21:33 (23536): Guest Log: [INFO] Checking for init_data.xml
2025-04-01 12:21:37 (23536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-01 12:21:37 (23536): Guest Log: [INFO] Detected branch: prod
2025-04-01 12:21:37 (23536): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-01 12:21:37 (23536): Guest Log: Copying input files
2025-04-01 12:21:39 (23536): Guest Log: Copied input files into RunAtlas.
2025-04-01 12:21:39 (23536): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-01 12:21:39 (23536): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-01 12:21:39 (23536): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-01 12:21:39 (23536): Guest Log: Further information can be found at the LHC@home message board.
2025-04-01 12:21:43 (23536): Guest Log: 00:00:10.092943 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 277 659 000ns (GuestNow=1 743 524 503 177 698 000 ns GuestLast=1 743 510 091 900 039 000 ns fSetTimeLastLoop=true )
2025-04-01 12:21:48 (23536): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-01 12:21:49 (23536): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-01 12:21:49 (23536): Guest Log: 2.6.3.0 1539 0 32180 144375 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-01 12:21:49 (23536): Guest Log: copied the webapp to /var/www
2025-04-01 12:21:50 (23536): Guest Log: ATHENA_PROC_NUMBER=2
2025-04-01 12:21:50 (23536): Guest Log: ATHENA_CORE_NUMBER=2
2025-04-01 12:21:50 (23536): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-01 12:21:50 (23536): Guest Log:  *** Starting ATLAS job. (PandaID=6582474716 taskID=43634898) ***
2025-04-01 12:47:47 (23536): Guest Log:  *** Job finished ***
2025-04-01 12:47:47 (23536): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:06,859 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140026254497600)>', '<ExcThread(queue_monitor, started 140025966606080)>']
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:08,867 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140026254497600)>', '<ExcThread(queue_monitor, started 140025966606080)>']
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:10,870 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140026254497600)>', '<ExcThread(queue_monitor, started 140025966606080)>']
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:12,873 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140026254497600)>', '<ExcThread(queue_monitor, started 140025966606080)>']
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,877 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140026254497600)>', '<ExcThread(queue_monitor, started 140025966606080)>']
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,902 [wrapper] The pilot process (5842) is still running after 3m. Sending SIGKILL (9).
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,905 [wrapper] The pilot process (5842) is still running after 3m. Sending SIGKILL (9).
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,914 [wrapper] ==== pilot stdout END ====
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,917 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,920 [wrapper] pilotpid: 5842
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:44:14,922 [wrapper] Pilot exit status: 137
2025-04-01 12:47:47 (23536): Guest Log: ./runpilot2-wrapper.sh: line 1045: /usr/bin/xargs: Input/output error
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,237 [wrapper] pandaids: 
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,241 [wrapper] Found: wrapper_sigkill_5842, so killed by wrapper
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,244 [wrapper] apfmon messages muted
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,262 [wrapper] No supervise_pilot CHILD process found
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,265 [wrapper] Test setup, not cleaning
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,267 [wrapper] apfmon messages muted
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,270 [wrapper] ==== wrapper stdout END ====
2025-04-01 12:47:47 (23536): Guest Log: 2025-04-01 16:47:46,272 [wrapper] ==== wrapper stderr END ====
2025-04-01 12:47:47 (23536): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 12:47:47 (23536): Guest Log:  *** Listing of results directory ***
2025-04-01 12:47:47 (23536): Guest Log: total 4204
2025-04-01 12:47:47 (23536): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Apr  1 11:43 pilot3.tar.gz
2025-04-01 12:47:47 (23536): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Apr  1 12:09 queuedata.json
2025-04-01 12:47:47 (23536): Guest Log: -rwx------. 1 atlas atlas   37140 Apr  1 12:10 runpilot2-wrapper.sh
2025-04-01 12:47:47 (23536): Guest Log: -rwxr-xr-x. 1 atlas atlas    9261 Apr  1 16:21 init_data.xml
2025-04-01 12:47:47 (23536): Guest Log: -rwxr-xr-x. 1 atlas atlas  507248 Apr  1 16:21 input.tar.gz
2025-04-01 12:47:47 (23536): Guest Log: -rwxr-xr-x. 1 atlas atlas   17571 Apr  1 16:21 start_atlas.sh
2025-04-01 12:47:47 (23536): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  1 16:21 EVNT.43634896._000470.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 12:47:47 (23536): Guest Log: -rw-r--r--. 1 atlas atlas    2595 Apr  1 16:21 pandaJob.out
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas     424 Apr  1 16:21 setup.sh.local
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas  989894 Apr  1 16:22 agis_schedconf.cvmfs.json
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas 1599134 Apr  1 16:22 agis_ddmendpoints.agis.ALL.json
2025-04-01 12:47:47 (23536): Guest Log: drwx------. 4 atlas atlas    4096 Apr  1 16:23 pilot3
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas     569 Apr  1 16:23 heartbeat.json
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas    1022 Apr  1 16:33 memory_monitor_summary.json
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas   49106 Apr  1 16:36 log.43634898._004433.job.log.tgz.1
2025-04-01 12:47:47 (23536): Guest Log: drwxrwx---. 2 atlas atlas    4096 Apr  1 16:36 PanDA_Pilot-6582474716
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas      95 Apr  1 16:40 pilot_heartbeat.json
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas       0 Apr  1 16:41 wrapper_sigint_5842
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas  145377 Apr  1 16:44 pilotlog.txt
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas       0 Apr  1 16:44 wrapper_sigkill_5842
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas  157980 Apr  1 16:47 log.43634898._004433.job.log.1
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas     188 Apr  1 16:47 output.list
2025-04-01 12:47:47 (23536): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr  1 16:47 runtime_log
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas  215040 Apr  1 16:47 result.tar.gz
2025-04-01 12:47:47 (23536): Guest Log: -rw-r--r--. 1 atlas atlas   10796 Apr  1 16:47 runtime_log.err
2025-04-01 12:47:47 (23536): Guest Log: -rw-------. 1 atlas atlas     645 Apr  1 16:47 g93LDmycpJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDkDLDm3tKEPn.diag
2025-04-01 12:47:47 (23536): Guest Log: Looking for outputfile HITS.43634898._004433.pool.root.1
2025-04-01 12:47:47 (23536): Guest Log: No HITS file was produced
2025-04-01 12:47:47 (23536): Guest Log: Successfully finished the ATLAS job!
2025-04-01 12:47:47 (23536): Guest Log: Copying the results back to the shared directory!
2025-04-01 12:47:47 (23536): Guest Log:  *** Contents of shared directory: ***
2025-04-01 12:47:47 (23536): Guest Log: total 353072
2025-04-01 12:47:47 (23536): Guest Log: -rwxrwxrwx. 1 root root 360786213 Apr  1 16:21 ATLAS.root_0
2025-04-01 12:47:47 (23536): Guest Log: -rwxrwxrwx. 1 root root      9261 Apr  1 16:21 init_data.xml
2025-04-01 12:47:47 (23536): Guest Log: -rwxrwxrwx. 1 root root    507248 Apr  1 16:19 input.tar.gz
2025-04-01 12:47:47 (23536): Guest Log: -rwxrwxrwx. 1 root root    215040 Apr  1 16:47 result.tar.gz
2025-04-01 12:47:47 (23536): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 16:19 start_atlas.sh
2025-04-01 12:47:47 (23536): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 12:47:47 (23536): VM Completion File Detected.
2025-04-01 12:47:47 (23536): Powering off VM.
2025-04-01 12:47:48 (23536): Successfully stopped VM.
2025-04-01 12:47:48 (23536): Deregistering VM. (boinc_d706badb098b235f, slot#0)
2025-04-01 12:47:48 (23536): Removing network bandwidth throttle group from VM.
2025-04-01 12:47:48 (23536): Removing VM from VirtualBox.
12:47:53 (23536): called boinc_finish(0)

</stderr_txt>
]]>

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