Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-01 15:13:33 (1616): Detected: vboxwrapper 26206
2025-04-01 15:13:33 (1616): Detected: BOINC client v7.16.20
2025-04-01 15:13:34 (1616): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-01 15:13:35 (1616): Successfully copied 'init_data.xml' to the shared directory.
2025-04-01 15:13:35 (1616): Create VM. (boinc_0dfe7f3ef798e619, slot#5)
2025-04-01 15:13:36 (1616): Setting Memory Size for VM. (4700MB)
2025-04-01 15:13:37 (1616): Setting CPU Count for VM. (7)
2025-04-01 15:13:37 (1616): Setting Chipset Options for VM.
2025-04-01 15:13:37 (1616): Setting Graphics Controller Options for VM.
2025-04-01 15:13:37 (1616): Setting Boot Options for VM.
2025-04-01 15:13:38 (1616): Setting Network Configuration for NAT.
2025-04-01 15:13:38 (1616): Enabling VM Network Access.
2025-04-01 15:13:38 (1616): Disabling USB Support for VM.
2025-04-01 15:13:38 (1616): Disabling COM Port Support for VM.
2025-04-01 15:13:39 (1616): Disabling LPT Port Support for VM.
2025-04-01 15:13:39 (1616): Disabling Audio Support for VM.
2025-04-01 15:13:39 (1616): Disabling Clipboard Support for VM.
2025-04-01 15:13:39 (1616): Disabling Drag and Drop Support for VM.
2025-04-01 15:13:40 (1616): Adding storage controller(s) to VM.
2025-04-01 15:13:40 (1616): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-01 15:13:40 (1616): Adding VirtualBox Guest Additions to VM.
2025-04-01 15:13:41 (1616): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-01 15:13:41 (1616): forwarding host port 50564 to guest port 80
2025-04-01 15:13:41 (1616): Enabling remote desktop for VM.
2025-04-01 15:13:41 (1616): Required extension pack not installed, remote desktop not enabled.
2025-04-01 15:13:41 (1616): Enabling shared directory for VM.
2025-04-01 15:13:42 (1616): Starting VM using VBoxManage interface. (boinc_0dfe7f3ef798e619, slot#5)
2025-04-01 15:13:45 (1616): Successfully started VM. (PID = '2420')
2025-04-01 15:13:45 (1616): Reporting VM Process ID to BOINC.
2025-04-01 15:13:45 (1616): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-01 15:13:45 (1616): Guest Log: CPUID EDX: 0x178bfbff
2025-04-01 15:13:45 (1616): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-01 15:13:45 (1616): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-01 15:13:45 (1616): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-01 15:13:45 (1616): Detected: Web Application Enabled (http://localhost:50564)
2025-04-01 15:13:45 (1616): Preference change detected
2025-04-01 15:13:45 (1616): Setting CPU throttle for VM. (100%)
2025-04-01 15:13:46 (1616): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-01 15:13:47 (1616): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-01 15:13:47 (1616): Guest Log: BIOS: Booting from Hard Disk...
2025-04-01 15:13:50 (1616): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-01 15:13:50 (1616): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-01 15:13:50 (1616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-01 15:13:56 (1616): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-01 15:13:56 (1616): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-01 15:14:01 (1616): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000121 main     Log opened 2025-04-01T15:13:59.174243000Z
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000181 main     OS Product: Linux
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000200 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000216 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000234 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000235 main     Process ID: 1351
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000235 main     Package type: LINUX_64BITS_GENERIC
2025-04-01 15:14:01 (1616): Guest Log: 00:00:00.000709 main     5.2.32 r132073 started. Verbose level = 0
2025-04-01 15:14:01 (1616): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-01 15:14:01 (1616): Guest Log: [INFO] Mounting shared directory
2025-04-01 15:14:01 (1616): Guest Log: [INFO] Checking for init_data.xml
2025-04-01 15:14:03 (1616): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-01 15:14:03 (1616): Guest Log: [INFO] Detected branch: prod
2025-04-01 15:14:03 (1616): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-01 15:14:03 (1616): Guest Log: Copying input files
2025-04-01 15:14:04 (1616): Guest Log: Copied input files into RunAtlas.
2025-04-01 15:14:04 (1616): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-01 15:14:04 (1616): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-01 15:14:04 (1616): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-01 15:14:04 (1616): Guest Log: Further information can be found at the LHC@home message board.
2025-04-01 15:14:12 (1616): Guest Log: 00:00:10.003404 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 620 130 000ns (GuestNow=1 743 513 251 555 684 000 ns GuestLast=1 743 520 439 175 814 000 ns fSetTimeLastLoop=true )
2025-04-01 15:14:16 (1616): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-01 15:14:17 (1616): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-01 15:14:17 (1616): Guest Log: 2.6.3.0 1631 0 32208 144368 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-01 15:14:18 (1616): Guest Log: copied the webapp to /var/www
2025-04-01 15:14:18 (1616): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-01 15:14:18 (1616): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-01 15:14:18 (1616): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-01 15:14:18 (1616): Guest Log:  *** Starting ATLAS job. (PandaID=6582421518 taskID=43634898) ***
2025-04-01 16:53:51 (1616): Status Report: Elapsed Time: '6000.000000'
2025-04-01 16:53:51 (1616): Status Report: CPU Time: '35780.546875'
2025-04-01 17:40:44 (1616): Guest Log:  *** Job finished ***
2025-04-01 17:40:44 (1616): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:27,539 | INFO     | [data] queue_monitor thread has finished
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:33,687 | INFO     | job.realtimelogging is not enabled
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:34,691 | INFO     | [payload] run_realtimelog thread has finished
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:35,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069639132992)>', '<ExcThread(monitor, started 140068463302400)>']
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:35,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:35,480 | INFO     | [monitor] control thread has ended
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,413 | INFO     | all workflow threads have been joined
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,413 | INFO     | end of generic workflow (traces error code: 0)
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,413 | INFO     | traces error code: 0
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,467 [wrapper] ==== pilot stdout END ====
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,471 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,474 [wrapper] pilotpid: 5986
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,478 [wrapper] Pilot exit status: 0
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,575 [wrapper] pandaids: 6582421518
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,596 [wrapper] cleanup supervisor_pilot  7280 5987
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,600 [wrapper] Test setup, not cleaning
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,603 [wrapper] apfmon messages muted
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,606 [wrapper] ==== wrapper stdout END ====
2025-04-01 17:40:44 (1616): Guest Log: 2025-04-01 15:40:40,610 [wrapper] ==== wrapper stderr END ====
2025-04-01 17:40:44 (1616): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 17:40:44 (1616): Guest Log:     "exeErrorCode": 0,
2025-04-01 17:40:44 (1616): Guest Log:     "exeErrorDiag": "",
2025-04-01 17:40:44 (1616): Guest Log:     "pilotErrorCode": 0,
2025-04-01 17:40:44 (1616): Guest Log:     "pilotErrorDiag": "",
2025-04-01 17:40:44 (1616): Guest Log:  *** Listing of results directory ***
2025-04-01 17:40:44 (1616): Guest Log: total 325596
2025-04-01 17:40:44 (1616): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Apr  1 07:10 pilot3.tar.gz
2025-04-01 17:40:44 (1616): Guest Log: -rwx------. 1 atlas atlas     37140 Apr  1 07:13 runpilot2-wrapper.sh
2025-04-01 17:40:44 (1616): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Apr  1 07:14 queuedata.json
2025-04-01 17:40:44 (1616): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Apr  1 13:14 init_data.xml
2025-04-01 17:40:44 (1616): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  1 13:14 start_atlas.sh
2025-04-01 17:40:44 (1616): Guest Log: -rwxr-xr-x. 1 atlas atlas    507246 Apr  1 13:14 input.tar.gz
2025-04-01 17:40:44 (1616): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  1 13:14 EVNT.43634896._000032.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 17:40:44 (1616): Guest Log: -rw-r--r--. 1 atlas atlas      2594 Apr  1 13:14 pandaJob.out
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas       424 Apr  1 13:14 setup.sh.local
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas    989894 Apr  1 13:15 agis_schedconf.cvmfs.json
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas   1599134 Apr  1 13:15 agis_ddmendpoints.agis.ALL.json
2025-04-01 17:40:44 (1616): Guest Log: drwx------. 4 atlas atlas      4096 Apr  1 13:15 pilot3
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas 327549890 Apr  1 15:38 HITS.43634898._000686.pool.root.1
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas      1026 Apr  1 15:39 memory_monitor_summary.json
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas    318159 Apr  1 15:39 log.43634898._000686.job.log.tgz.1
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas        95 Apr  1 15:39 pilot_heartbeat.json
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas      7702 Apr  1 15:40 heartbeat.json
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas      4351 Apr  1 15:40 pilotlog.txt
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas    731090 Apr  1 15:40 log.43634898._000686.job.log.1
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas       357 Apr  1 15:40 output.list
2025-04-01 17:40:44 (1616): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  1 15:40 runtime_log
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas   1064960 Apr  1 15:40 result.tar.gz
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas       654 Apr  1 15:40 TfONDmhzkJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmU8CLDmAMHT3n.diag
2025-04-01 17:40:44 (1616): Guest Log: -rw-r--r--. 1 atlas atlas     10936 Apr  1 15:40 runtime_log.err
2025-04-01 17:40:44 (1616): Guest Log: Looking for outputfile HITS.43634898._000686.pool.root.1
2025-04-01 17:40:44 (1616): Guest Log: HITS file was successfully produced
2025-04-01 17:40:44 (1616): Guest Log: -rw-------. 1 atlas atlas 327549890 Apr  1 15:38 /home/atlas/RunAtlas/HITS.43634898._000686.pool.root.1
2025-04-01 17:40:46 (1616): Guest Log: Successfully finished the ATLAS job!
2025-04-01 17:40:46 (1616): Guest Log: Copying the results back to the shared directory!
2025-04-01 17:40:46 (1616): Guest Log:  *** Contents of shared directory: ***
2025-04-01 17:40:46 (1616): Guest Log: total 669836
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root 356751899 Apr  1 13:13 ATLAS.root_0
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root 327549890 Apr  1  2025 HITS.pool.root.1
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root      8774 Apr  1 13:13 init_data.xml
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root    507246 Apr  1 13:11 input.tar.gz
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root   1064960 Apr  1  2025 result.tar.gz
2025-04-01 17:40:46 (1616): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 13:11 start_atlas.sh
2025-04-01 17:40:46 (1616): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 17:40:46 (1616): VM Completion File Detected.
2025-04-01 17:40:46 (1616): Powering off VM.
2025-04-01 17:40:47 (1616): Successfully stopped VM.
2025-04-01 17:40:47 (1616): Deregistering VM. (boinc_0dfe7f3ef798e619, slot#5)
2025-04-01 17:40:47 (1616): Removing network bandwidth throttle group from VM.
2025-04-01 17:40:47 (1616): Removing VM from VirtualBox.
17:40:53 (1616): called boinc_finish(0)

</stderr_txt>
]]>

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